Wall clock time and date at job start Tue Mar 31 2020 12:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50703 * 119.99624 * 2 1 4 4 N 1.46501 * 109.46916 * 125.00247 * 3 2 1 5 5 C 1.46498 * 120.00045 * 274.83708 * 4 3 2 6 6 C 1.50706 * 109.47212 * 263.68543 * 5 4 3 7 7 H 1.08005 * 119.99494 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00177 * 179.97438 * 6 5 4 9 9 N 1.31513 * 119.99639 * 179.97438 * 8 6 5 10 10 Si 1.86799 * 120.00085 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46774 * 90.00203 * 10 8 6 12 12 H 1.48501 * 109.47137 * 209.99882 * 10 8 6 13 13 H 1.48496 * 109.47116 * 330.00360 * 10 8 6 14 14 C 1.34781 * 120.00069 * 94.83469 * 4 3 2 15 15 O 1.21358 * 119.99807 * 354.62087 * 14 4 3 16 16 C 1.49351 * 120.00122 * 174.62868 * 14 4 3 17 17 O 1.21382 * 119.99717 * 0.29581 * 16 14 4 18 18 N 1.34769 * 120.00261 * 180.29946 * 16 14 4 19 19 C 1.39725 * 120.00184 * 184.82175 * 18 16 14 20 20 C 1.38952 * 120.07647 * 324.62481 * 19 18 16 21 21 C 1.38077 * 119.92200 * 180.22910 * 20 19 18 22 22 C 1.38318 * 120.07484 * 359.51655 * 21 20 19 23 23 C 1.50695 * 119.92085 * 180.20732 * 22 21 20 24 24 C 1.38277 * 120.15315 * 0.46405 * 22 21 20 25 25 C 1.50695 * 119.95920 * 179.76900 * 24 22 21 26 26 C 1.38112 * 120.07163 * 359.78990 * 24 22 21 27 27 H 1.07997 * 119.99664 * 180.02562 * 1 2 3 28 28 H 1.07997 * 119.99867 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00591 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47251 * 5.00410 * 3 2 1 31 31 H 1.09000 * 109.46976 * 244.99841 * 3 2 1 32 32 H 1.09002 * 109.47296 * 23.68435 * 5 4 3 33 33 H 1.08998 * 109.47304 * 143.68631 * 5 4 3 34 34 H 0.97008 * 119.99608 * 179.97438 * 9 8 6 35 35 H 0.96998 * 120.00013 * 4.82352 * 18 16 14 36 36 H 1.07995 * 120.03975 * 359.95757 * 20 19 18 37 37 H 1.07995 * 119.96227 * 179.74877 * 21 20 19 38 38 H 1.08996 * 109.47639 * 270.24982 * 23 22 21 39 39 H 1.09000 * 109.47169 * 30.25627 * 23 22 21 40 40 H 1.09004 * 109.47177 * 150.25053 * 23 22 21 41 41 H 1.09006 * 109.47179 * 270.02117 * 25 24 22 42 42 H 1.08996 * 109.47774 * 30.01917 * 25 24 22 43 43 H 1.09004 * 109.47262 * 150.02466 * 25 24 22 44 44 H 1.08008 * 120.03279 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5294 1.7655 2.4515 6 6 2.8591 3.2231 2.6463 7 1 3.3645 3.7714 1.8651 8 6 2.5157 3.8564 3.8218 9 7 2.8039 5.1282 3.9920 10 14 1.6409 2.9081 5.1727 11 1 2.6461 2.3026 6.0830 12 1 0.7698 3.8325 5.9421 13 1 0.8118 1.8353 4.5672 14 6 4.2769 0.9577 0.9579 15 8 4.6383 0.5064 -0.1092 16 6 5.2539 1.0982 2.0787 17 8 4.8911 1.5444 3.1476 18 7 6.5383 0.7296 1.9033 19 6 7.4288 0.7659 2.9794 20 6 7.3210 1.7650 3.9391 21 6 8.2056 1.8006 4.9986 22 6 9.1919 0.8374 5.1108 23 6 10.1527 0.8769 6.2711 24 6 9.3018 -0.1585 4.1578 25 6 10.3813 -1.2026 4.2815 26 6 8.4235 -0.1970 3.0926 27 1 -0.5399 -0.9353 0.0004 28 1 -0.5400 0.9353 0.0004 29 1 1.8501 -0.9352 -0.0004 30 1 1.3585 2.1317 0.0896 31 1 2.6213 1.4027 -0.9314 32 1 1.4508 1.6245 2.5216 33 1 3.0239 1.1749 3.2227 34 1 2.5619 5.5740 4.8189 35 1 6.8446 0.4392 1.0300 36 1 6.5489 2.5154 3.8540 37 1 8.1250 2.5792 5.7427 38 1 11.0205 1.4798 6.0040 39 1 9.6580 1.3158 7.1376 40 1 10.4743 -0.1366 6.5112 41 1 11.2783 -0.8609 3.7649 42 1 10.6090 -1.3670 5.3347 43 1 10.0376 -2.1354 3.8342 44 1 8.5102 -0.9749 2.3484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293184305.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:35 Heat of formation + Delta-G solvation = -25.249927 kcal Electronic energy + Delta-G solvation = -26434.695677 eV Core-core repulsion = 22738.566605 eV Total energy + Delta-G solvation = -3696.129072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -42.14101 -40.70066 -39.36940 -37.66582 -36.22405 -35.00631 -33.94201 -33.45563 -32.50771 -30.09225 -28.63840 -28.09509 -26.88767 -25.12892 -24.03553 -23.26445 -21.88607 -20.99115 -20.53472 -19.13517 -18.93689 -18.19133 -17.50296 -17.04012 -16.92856 -16.40833 -16.11235 -16.04737 -15.93229 -15.22189 -15.05511 -14.85821 -14.68058 -14.44589 -14.13060 -14.04826 -13.81570 -13.53357 -13.50131 -13.19020 -12.93834 -12.90517 -12.77136 -12.65599 -12.33893 -12.23271 -12.10393 -11.98101 -11.92979 -11.69700 -11.15880 -10.78119 -10.53491 -10.18234 -9.71285 -9.68362 -8.98322 -8.27150 -6.28140 0.05322 0.41692 0.61166 1.09028 1.33947 1.39127 1.44167 1.59717 2.15863 2.35418 2.56113 2.77781 3.10579 3.32033 3.88784 3.94430 4.00083 4.10843 4.12201 4.29257 4.37093 4.42283 4.46529 4.62883 4.74062 4.77785 4.80632 4.85620 4.93513 4.96481 4.99322 5.03231 5.13924 5.22843 5.29380 5.37709 5.46973 5.48869 5.56629 5.65981 5.73428 5.80983 6.01324 6.08849 6.11907 6.35015 6.67568 6.72633 7.00182 7.33133 8.89907 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012179 B = 0.004464 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.576612 B = 6270.194027 C = 7946.577530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.183 4.183 3 C 0.136 3.864 4 N -0.558 5.558 5 C 0.215 3.785 6 C -0.506 4.506 7 H 0.026 0.974 8 C 0.025 3.975 9 N -0.946 5.946 10 Si 0.935 3.065 11 H -0.279 1.279 12 H -0.281 1.281 13 H -0.238 1.238 14 C 0.508 3.492 15 O -0.552 6.552 16 C 0.488 3.512 17 O -0.477 6.477 18 N -0.643 5.643 19 C 0.127 3.873 20 C -0.148 4.148 21 C -0.111 4.111 22 C -0.105 4.105 23 C -0.111 4.111 24 C -0.073 4.073 25 C -0.111 4.111 26 C -0.137 4.137 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.265 0.735 35 H 0.426 0.574 36 H 0.102 0.898 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.076 0.924 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.367 -14.807 -0.648 18.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.203 4.203 3 C 0.015 3.985 4 N -0.287 5.287 5 C 0.093 3.907 6 C -0.545 4.545 7 H 0.045 0.955 8 C -0.173 4.173 9 N -0.587 5.587 10 Si 0.759 3.241 11 H -0.205 1.205 12 H -0.206 1.206 13 H -0.162 1.162 14 C 0.291 3.709 15 O -0.433 6.433 16 C 0.270 3.730 17 O -0.348 6.348 18 N -0.292 5.292 19 C 0.033 3.967 20 C -0.168 4.168 21 C -0.130 4.130 22 C -0.105 4.105 23 C -0.167 4.167 24 C -0.073 4.073 25 C -0.167 4.167 26 C -0.157 4.157 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.108 0.892 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.265 0.735 36 H 0.121 0.879 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.104 0.896 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 10.162 -14.566 -0.343 17.764 hybrid contribution -0.538 0.630 0.132 0.839 sum 9.624 -13.936 -0.210 16.938 Atomic orbital electron populations 1.24104 0.94948 1.03389 0.97315 1.23121 0.96760 0.97595 1.02773 1.20813 0.91914 0.97061 0.88733 1.47931 1.08072 1.60162 1.12568 1.19960 0.95820 0.94673 0.80213 1.21181 1.37605 0.94070 1.01606 0.95528 1.25534 0.96308 0.95341 1.00133 1.70038 1.49444 1.11919 1.27309 0.85911 0.79032 0.79449 0.79731 1.20512 1.20626 1.16166 1.19885 0.83807 0.79553 0.87669 1.90644 1.78731 1.46521 1.27402 1.20425 0.83873 0.79665 0.89069 1.90909 1.77607 1.38863 1.27410 1.43007 1.07526 1.65478 1.13207 1.17890 0.92641 0.96110 0.90029 1.21263 1.00314 0.98415 0.96839 1.21075 0.94851 0.99562 0.97491 1.20126 0.97284 0.94945 0.98190 1.20884 0.97523 1.04016 0.94313 1.19943 0.97243 0.97002 0.93146 1.20907 0.95818 0.95937 1.04031 1.21021 0.96159 0.97915 1.00563 0.86024 0.87618 0.87485 0.89212 0.89304 0.93697 0.93116 0.92634 0.73472 0.87942 0.85545 0.89995 0.91616 0.89277 0.89631 0.89672 0.90541 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.73 14.32 67.78 0.97 -2.76 16 2 C -0.18 -5.26 9.84 25.64 0.25 -5.01 16 3 C 0.14 4.70 5.83 85.63 0.50 5.20 16 4 N -0.56 -23.48 2.46 -832.18 -2.05 -25.53 16 5 C 0.21 10.18 3.85 85.64 0.33 10.51 16 6 C -0.51 -28.95 8.34 25.60 0.21 -28.73 16 7 H 0.03 1.72 8.06 -2.91 -0.02 1.69 16 8 C 0.02 1.44 5.47 84.65 0.46 1.90 16 9 N -0.95 -59.64 13.96 21.45 0.30 -59.34 16 10 Si 0.93 44.77 27.47 68.60 1.88 46.65 16 11 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 12 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 13 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 14 C 0.51 21.27 7.67 87.24 0.67 21.94 16 15 O -0.55 -22.36 16.04 -3.27 -0.05 -22.41 16 16 C 0.49 20.65 7.57 87.24 0.66 21.31 16 17 O -0.48 -23.52 9.57 -3.35 -0.03 -23.55 16 18 N -0.64 -22.14 5.32 -304.84 -1.62 -23.76 16 19 C 0.13 4.23 6.29 38.21 0.24 4.47 16 20 C -0.15 -5.62 8.69 22.40 0.19 -5.42 16 21 C -0.11 -3.48 9.69 22.25 0.22 -3.26 16 22 C -0.10 -2.55 5.88 -19.84 -0.12 -2.66 16 23 C -0.11 -1.82 9.60 71.23 0.68 -1.14 16 24 C -0.07 -1.61 5.88 -19.89 -0.12 -1.72 16 25 C -0.11 -1.47 9.60 71.23 0.68 -0.79 16 26 C -0.14 -3.45 9.62 22.40 0.22 -3.23 16 27 H 0.12 2.24 8.06 -2.91 -0.02 2.22 16 28 H 0.11 2.35 7.84 -2.91 -0.02 2.33 16 29 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 30 H 0.09 3.06 7.76 -2.39 -0.02 3.04 16 31 H 0.09 3.02 7.36 -2.39 -0.02 3.01 16 32 H 0.05 2.01 7.08 -2.39 -0.02 2.00 16 33 H 0.05 2.52 5.27 -2.39 -0.01 2.50 16 34 H 0.26 15.67 8.31 -92.70 -0.77 14.90 16 35 H 0.43 12.29 8.30 -92.71 -0.77 11.52 16 36 H 0.10 4.80 6.24 -2.91 -0.02 4.78 16 37 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 38 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.08 8.09 -2.39 -0.02 1.06 16 40 H 0.09 1.09 5.94 -2.38 -0.01 1.07 16 41 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 42 H 0.08 0.91 5.94 -2.39 -0.01 0.89 16 43 H 0.08 0.88 8.08 -2.38 -0.02 0.86 16 44 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -73.35 366.49 4.69 -68.67 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.19 Total: 28.68 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: 6.06 Total: 10.60 kcal Atomic # 7 Polarization: -105.27 SS G_CDS: -3.37 Total: -108.63 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -0.08 Total: -45.97 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.88 Total: 46.65 kcal Total: -73.35 4.69 -68.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293184305.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.416 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds