Wall clock time and date at job start Tue Mar 31 2020 10:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46723 * 269.99404 * 3 2 1 5 5 H 1.48498 * 109.47613 * 29.99514 * 3 2 1 6 6 H 1.48498 * 109.47173 * 149.99639 * 3 2 1 7 7 C 1.37878 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47410 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47623 * 179.97438 * 10 9 7 12 12 C 1.46837 * 111.00402 * 190.00076 * 11 10 9 13 13 C 1.53033 * 109.52688 * 185.83841 * 12 11 10 14 14 C 1.53127 * 109.27988 * 300.82326 * 13 12 11 15 15 S 1.81395 * 109.52263 * 177.55563 * 14 13 12 16 16 O 1.42105 * 110.54530 * 296.62469 * 15 14 13 17 17 O 1.42101 * 110.54333 * 73.37641 * 15 14 13 18 18 N 1.65599 * 104.44748 * 185.00075 * 15 14 13 19 19 C 1.47021 * 125.64852 * 269.69237 * 18 15 14 20 20 C 1.54315 * 107.27934 * 180.96844 * 19 18 15 21 21 C 1.55162 * 102.86052 * 22.52576 * 20 19 18 22 22 C 1.47427 * 125.64952 * 90.00041 * 18 15 14 23 23 C 1.53119 * 109.15674 * 57.65100 * 14 13 12 24 24 C 1.46851 * 110.99703 * 314.21348 * 11 10 9 25 25 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.47025 * 59.99459 * 9 7 2 27 27 H 1.09004 * 109.47569 * 300.00118 * 9 7 2 28 28 H 1.08999 * 109.47072 * 59.99902 * 10 9 7 29 29 H 1.08996 * 109.47277 * 300.00512 * 10 9 7 30 30 H 1.09009 * 109.46082 * 65.82589 * 12 11 10 31 31 H 1.09002 * 109.45437 * 305.85450 * 12 11 10 32 32 H 1.09001 * 109.50993 * 180.88227 * 13 12 11 33 33 H 1.09000 * 109.53595 * 60.77942 * 13 12 11 34 34 H 1.08995 * 109.52092 * 297.68415 * 14 13 12 35 35 H 1.09006 * 109.88035 * 300.51406 * 19 18 15 36 36 H 1.08998 * 109.88274 * 61.67785 * 19 18 15 37 37 H 1.08996 * 110.92725 * 264.11179 * 20 19 18 38 38 H 1.09003 * 110.59090 * 140.78273 * 20 19 18 39 39 H 1.08999 * 111.00394 * 206.22697 * 21 20 19 40 40 H 1.08998 * 111.03722 * 82.39580 * 21 20 19 41 41 H 1.09000 * 110.36555 * 274.67449 * 22 18 15 42 42 H 1.08999 * 110.36676 * 36.88786 * 22 18 15 43 43 H 1.08995 * 109.50447 * 62.28808 * 23 14 13 44 44 H 1.09005 * 109.50150 * 182.40344 * 23 14 13 45 45 H 1.08998 * 109.46436 * 294.17078 * 24 11 10 46 46 H 1.08998 * 109.46073 * 54.15376 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4169 -6.0650 0.2392 13 6 1.6463 -7.3785 0.0890 14 6 0.4916 -7.4051 1.0944 15 16 -0.4699 -8.9272 0.8732 16 8 -1.0673 -8.9568 -0.4159 17 8 0.2470 -10.0472 1.3742 18 7 -1.7488 -8.7628 1.9123 19 6 -1.7780 -9.2100 3.3125 20 6 -3.1750 -8.8701 3.8732 21 6 -4.0464 -8.7721 2.5930 22 6 -3.0487 -8.1494 1.5847 23 6 -0.4103 -6.1909 0.8561 24 6 0.4201 -4.9118 0.9842 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 2.8255 -5.9969 1.2476 31 1 3.2310 -6.0366 -0.4851 32 1 2.3154 -8.2172 0.2812 33 1 1.2491 -7.4543 -0.9232 34 1 0.8906 -7.3703 2.1082 35 1 -1.6084 -10.2856 3.3618 36 1 -1.0133 -8.6855 3.8853 37 1 -3.1606 -7.9181 4.4036 38 1 -3.5323 -9.6693 4.5226 39 1 -4.9019 -8.1158 2.7521 40 1 -4.3700 -9.7594 2.2635 41 1 -3.0019 -7.0684 1.7157 42 1 -3.3371 -8.3948 0.5626 43 1 -0.8397 -6.2473 -0.1441 44 1 -1.2104 -6.1810 1.5963 45 1 0.8379 -4.8491 1.9889 46 1 -0.2162 -4.0460 0.8008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373864573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:54 Heat of formation + Delta-G solvation = -74.875268 kcal Electronic energy + Delta-G solvation = -25551.801922 eV Core-core repulsion = 21988.964885 eV Total energy + Delta-G solvation = -3562.837036 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.87908 -38.56683 -37.22409 -36.05233 -34.47948 -32.62536 -31.39271 -30.72921 -29.27032 -29.22226 -25.46995 -23.65307 -23.02592 -22.77043 -21.50377 -20.48783 -19.56707 -19.04541 -17.85329 -17.20306 -16.52895 -16.30132 -15.67832 -15.03273 -14.77321 -14.53686 -14.20592 -14.19510 -14.01836 -13.79358 -13.54023 -13.40344 -12.90705 -12.87578 -12.46746 -12.23993 -12.15619 -11.98655 -11.84804 -11.81245 -11.61510 -11.43525 -11.28866 -11.25064 -11.04145 -11.00207 -10.93018 -10.67344 -10.50651 -10.15068 -9.96450 -9.38261 -9.16409 -9.10673 -8.39129 -7.78689 -6.05309 -4.07627 0.10042 2.46521 3.28907 3.35251 3.38115 3.69364 3.86602 4.17978 4.28085 4.34430 4.37080 4.47526 4.60623 4.67781 4.93491 4.99736 5.16245 5.19353 5.25701 5.31032 5.42545 5.44869 5.49037 5.52662 5.57095 5.58001 5.63075 5.67624 5.70563 5.81971 5.89918 5.93928 5.99203 6.14222 6.18227 6.24175 6.38898 6.47898 6.86029 7.42904 7.52988 7.70533 7.79496 7.98735 8.37270 8.98709 9.56392 11.06015 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.003077 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.523795 B = 9096.837822 C = 9993.282828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.020 3.980 10 C 0.062 3.938 11 N -0.540 5.540 12 C 0.065 3.935 13 C -0.103 4.103 14 C -0.582 4.582 15 S 2.624 3.376 16 O -0.948 6.948 17 O -0.960 6.960 18 N -1.013 6.013 19 C 0.120 3.880 20 C -0.129 4.129 21 C -0.129 4.129 22 C 0.112 3.888 23 C -0.099 4.099 24 C 0.059 3.941 25 H 0.261 0.739 26 H 0.026 0.974 27 H 0.020 0.980 28 H 0.020 0.980 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.782 -19.159 7.448 21.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.064 4.064 11 N -0.264 5.264 12 C -0.065 4.065 13 C -0.143 4.143 14 C -0.692 4.692 15 S 2.721 3.279 16 O -0.939 6.939 17 O -0.950 6.950 18 N -0.852 5.852 19 C -0.006 4.006 20 C -0.168 4.168 21 C -0.168 4.168 22 C -0.013 4.013 23 C -0.138 4.138 24 C -0.070 4.070 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.038 0.962 28 H 0.038 0.962 29 H 0.083 0.917 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.148 0.852 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.102 0.898 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.912 -19.883 6.373 21.700 hybrid contribution 1.072 1.698 1.240 2.360 sum -4.841 -18.185 7.613 20.300 Atomic orbital electron populations 1.69957 1.06016 1.26670 1.50606 1.24988 0.94853 0.99221 0.95216 0.86582 0.79785 0.83389 0.78166 1.20590 1.21215 1.19945 1.21170 0.93020 0.90973 1.50967 0.92753 1.19254 0.94118 0.90519 0.97800 1.22329 0.97051 0.87883 0.99149 1.62027 1.11630 1.03653 1.49139 1.21915 0.94853 0.90017 0.99715 1.21439 0.95018 0.99502 0.98304 1.30548 1.10854 1.19077 1.08740 1.04799 0.73564 0.76345 0.73224 1.93579 1.75010 1.87048 1.38243 1.93564 1.73473 1.47438 1.80570 1.58634 1.27412 1.74859 1.24256 1.21701 0.98359 0.99856 0.80661 1.22636 0.93959 1.02626 0.97595 1.22761 0.97567 1.01788 0.94728 1.22149 0.81555 0.97481 1.00147 1.21499 0.96402 0.92407 1.03448 1.22101 0.94198 0.97333 0.93389 0.92949 0.95569 0.96171 0.96164 0.91720 0.95063 0.90308 0.90593 0.89409 0.85192 0.91112 0.91769 0.90389 0.90231 0.89824 0.90669 0.91002 0.89674 0.89418 0.90480 0.95263 0.88048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 7 C -0.52 -14.52 9.11 -34.44 -0.31 -14.83 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.51 4.22 -27.89 -0.12 0.39 16 10 C 0.06 1.29 5.21 -3.83 -0.02 1.27 16 11 N -0.54 -9.50 4.81 -234.68 -1.13 -10.63 16 12 C 0.06 0.93 5.42 -3.84 -0.02 0.91 16 13 C -0.10 -1.28 5.39 -26.65 -0.14 -1.43 16 14 C -0.58 -6.74 2.94 -26.60 -0.08 -6.82 16 15 S 2.62 32.03 5.10 -107.50 -0.55 31.48 16 16 O -0.95 -14.25 17.27 -57.54 -0.99 -15.25 16 17 O -0.96 -13.96 17.60 -57.54 -1.01 -14.97 16 18 N -1.01 -10.02 3.22 -111.42 -0.36 -10.38 16 19 C 0.12 0.96 6.89 -3.07 -0.02 0.94 16 20 C -0.13 -0.78 6.95 -24.90 -0.17 -0.95 16 21 C -0.13 -0.84 7.08 -24.58 -0.17 -1.01 16 22 C 0.11 0.95 6.67 -2.53 -0.02 0.94 16 23 C -0.10 -1.26 5.14 -26.65 -0.14 -1.40 16 24 C 0.06 0.96 4.85 -3.83 -0.02 0.94 16 25 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 26 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.02 0.52 6.21 -51.93 -0.32 0.20 16 28 H 0.02 0.41 8.08 -51.93 -0.42 -0.01 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.03 0.44 8.14 -51.92 -0.42 0.01 16 31 H 0.08 1.06 8.12 -51.93 -0.42 0.64 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.13 1.30 8.14 -51.93 -0.42 0.87 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.55 6.82 -51.93 -0.35 0.20 16 42 H 0.08 0.78 7.66 -51.93 -0.40 0.38 16 43 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.08 0.80 6.20 -51.93 -0.32 0.48 16 45 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.10 1.89 5.81 -51.93 -0.30 1.59 16 LS Contribution 366.41 15.07 5.52 5.52 Total: -1.00 -33.79 366.41 -12.13 -45.92 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -8.00 Total: -3.01 kcal Atomic # 6 Polarization: -18.18 SS G_CDS: -1.33 Total: -19.51 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: -0.75 Total: -46.52 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -2.01 Total: -30.22 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: 32.03 SS G_CDS: -0.55 Total: 31.48 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.79 -12.13 -45.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373864573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.953 kcal (2) G-P(sol) polarization free energy of solvation -33.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds