Wall clock time and date at job start Tue Mar 31 2020 10:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 119.99786 * 2 1 4 4 H 1.48501 * 109.46723 * 269.99404 * 3 2 1 5 5 H 1.48498 * 109.47613 * 29.99514 * 3 2 1 6 6 H 1.48498 * 109.47173 * 149.99639 * 3 2 1 7 7 C 1.37878 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99833 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00139 * 0.02562 * 7 2 1 10 10 C 1.52992 * 109.47410 * 179.97438 * 9 7 2 11 11 N 1.46903 * 109.47623 * 179.97438 * 10 9 7 12 12 C 1.46837 * 111.00402 * 190.00076 * 11 10 9 13 13 C 1.53033 * 109.52688 * 185.83841 * 12 11 10 14 14 C 1.53127 * 109.27988 * 300.82326 * 13 12 11 15 15 S 1.81395 * 109.52263 * 177.55563 * 14 13 12 16 16 O 1.42105 * 110.54530 * 296.62469 * 15 14 13 17 17 O 1.42101 * 110.54333 * 73.37641 * 15 14 13 18 18 N 1.65599 * 104.44748 * 185.00075 * 15 14 13 19 19 C 1.47021 * 125.64852 * 269.69237 * 18 15 14 20 20 C 1.54315 * 107.27934 * 180.96844 * 19 18 15 21 21 C 1.55162 * 102.86052 * 22.52576 * 20 19 18 22 22 C 1.47427 * 125.64952 * 90.00041 * 18 15 14 23 23 C 1.53119 * 109.15674 * 57.65100 * 14 13 12 24 24 C 1.46851 * 110.99703 * 314.21348 * 11 10 9 25 25 H 0.97004 * 120.00281 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.47025 * 59.99459 * 9 7 2 27 27 H 1.09004 * 109.47569 * 300.00118 * 9 7 2 28 28 H 1.08999 * 109.47072 * 59.99902 * 10 9 7 29 29 H 1.08996 * 109.47277 * 300.00512 * 10 9 7 30 30 H 1.09009 * 109.46082 * 65.82589 * 12 11 10 31 31 H 1.09002 * 109.45437 * 305.85450 * 12 11 10 32 32 H 1.09001 * 109.50993 * 180.88227 * 13 12 11 33 33 H 1.09000 * 109.53595 * 60.77942 * 13 12 11 34 34 H 1.08995 * 109.52092 * 297.68415 * 14 13 12 35 35 H 1.09006 * 109.88035 * 300.51406 * 19 18 15 36 36 H 1.08998 * 109.88274 * 61.67785 * 19 18 15 37 37 H 1.08996 * 110.92725 * 264.11179 * 20 19 18 38 38 H 1.09003 * 110.59090 * 140.78273 * 20 19 18 39 39 H 1.08999 * 111.00394 * 206.22697 * 21 20 19 40 40 H 1.08998 * 111.03722 * 82.39580 * 21 20 19 41 41 H 1.09000 * 110.36555 * 274.67449 * 22 18 15 42 42 H 1.08999 * 110.36676 * 36.88786 * 22 18 15 43 43 H 1.08995 * 109.50447 * 62.28808 * 23 14 13 44 44 H 1.09005 * 109.50150 * 182.40344 * 23 14 13 45 45 H 1.08998 * 109.46436 * 294.17078 * 24 11 10 46 46 H 1.08998 * 109.46073 * 54.15376 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9343 0.0012 12 6 2.4169 -6.0650 0.2392 13 6 1.6463 -7.3785 0.0890 14 6 0.4916 -7.4051 1.0944 15 16 -0.4699 -8.9272 0.8732 16 8 -1.0673 -8.9568 -0.4159 17 8 0.2470 -10.0472 1.3742 18 7 -1.7488 -8.7628 1.9123 19 6 -1.7780 -9.2100 3.3125 20 6 -3.1750 -8.8701 3.8732 21 6 -4.0464 -8.7721 2.5930 22 6 -3.0487 -8.1494 1.5847 23 6 -0.4103 -6.1909 0.8561 24 6 0.4201 -4.9118 0.9842 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5568 0.8903 28 1 2.8719 -3.6043 0.8905 29 1 2.8720 -3.6043 -0.8894 30 1 2.8255 -5.9969 1.2476 31 1 3.2310 -6.0366 -0.4851 32 1 2.3154 -8.2172 0.2812 33 1 1.2491 -7.4543 -0.9232 34 1 0.8906 -7.3703 2.1082 35 1 -1.6084 -10.2856 3.3618 36 1 -1.0133 -8.6855 3.8853 37 1 -3.1606 -7.9181 4.4036 38 1 -3.5323 -9.6693 4.5226 39 1 -4.9019 -8.1158 2.7521 40 1 -4.3700 -9.7594 2.2635 41 1 -3.0019 -7.0684 1.7157 42 1 -3.3371 -8.3948 0.5626 43 1 -0.8397 -6.2473 -0.1441 44 1 -1.2104 -6.1810 1.5963 45 1 0.8379 -4.8491 1.9889 46 1 -0.2162 -4.0460 0.8008 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373864573.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:53 Heat of formation + Delta-G solvation = -98.827309 kcal Electronic energy + Delta-G solvation = -25552.840560 eV Core-core repulsion = 21988.964885 eV Total energy + Delta-G solvation = -3563.875675 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.12583 -39.21325 -38.29278 -37.12285 -36.07374 -34.46848 -32.29603 -31.65486 -30.99914 -29.85908 -27.12086 -25.19030 -24.25866 -23.53305 -22.04710 -21.99132 -20.89090 -19.93675 -18.74108 -18.68583 -17.96797 -17.22029 -16.67344 -16.56703 -16.22507 -15.98547 -15.60927 -15.09350 -14.93309 -14.68710 -14.59272 -14.38582 -14.22913 -14.10005 -13.53947 -13.45606 -13.31885 -13.22582 -13.18747 -13.01704 -12.80287 -12.65780 -12.46195 -12.33167 -12.17882 -12.10663 -12.01023 -11.91336 -11.79318 -11.50985 -11.37236 -11.19910 -11.00454 -10.53711 -9.90818 -9.19456 -8.20649 -6.31307 -0.86477 1.40416 1.41408 1.52125 1.59546 2.39875 2.73854 2.95337 3.02725 3.13023 3.32382 3.49216 3.65251 3.87917 3.94930 4.08919 4.15670 4.30195 4.37516 4.42339 4.43275 4.45891 4.55567 4.61777 4.62429 4.66635 4.76345 4.83331 4.92374 4.93925 4.98038 5.03476 5.04062 5.06531 5.09003 5.16615 5.22044 5.39757 5.44826 5.50731 5.65849 5.77965 6.07564 6.28929 6.32848 6.84890 7.37582 8.91064 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020002 B = 0.003077 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.523795 B = 9096.837822 C = 9993.282828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.964 3.036 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.029 3.971 10 C 0.078 3.922 11 N -0.552 5.552 12 C 0.062 3.938 13 C -0.108 4.108 14 C -0.574 4.574 15 S 2.641 3.359 16 O -0.982 6.982 17 O -0.983 6.983 18 N -1.014 6.014 19 C 0.108 3.892 20 C -0.123 4.123 21 C -0.126 4.126 22 C 0.101 3.899 23 C -0.093 4.093 24 C 0.059 3.941 25 H 0.264 0.736 26 H -0.007 1.007 27 H 0.006 0.994 28 H 0.022 0.978 29 H 0.063 0.937 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.154 0.846 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.103 0.897 45 H 0.034 0.966 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -19.545 8.918 22.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.050 4.050 11 N -0.277 5.277 12 C -0.067 4.067 13 C -0.147 4.147 14 C -0.685 4.685 15 S 2.739 3.261 16 O -0.972 6.972 17 O -0.974 6.974 18 N -0.854 5.854 19 C -0.017 4.017 20 C -0.162 4.162 21 C -0.165 4.165 22 C -0.024 4.024 23 C -0.131 4.131 24 C -0.070 4.070 25 H 0.073 0.927 26 H 0.011 0.989 27 H 0.024 0.976 28 H 0.041 0.959 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.172 0.828 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.121 0.879 45 H 0.052 0.948 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.406 -20.299 7.840 22.422 hybrid contribution 0.870 1.792 0.794 2.144 sum -4.536 -18.507 8.635 20.920 Atomic orbital electron populations 1.70086 1.07657 1.27766 1.51356 1.25909 0.95756 1.03137 0.94651 0.85468 0.78670 0.78586 0.78435 1.19942 1.20651 1.18851 1.21614 0.93489 0.92344 1.50957 0.92366 1.19074 0.94315 0.91957 0.95447 1.21981 0.95817 0.88028 0.99143 1.61977 1.12333 1.03247 1.50171 1.22023 0.94745 0.89345 1.00543 1.21514 0.95622 0.99305 0.98299 1.30495 1.10319 1.17770 1.09921 1.04040 0.73464 0.75986 0.72574 1.93535 1.75718 1.87521 1.40441 1.93531 1.74310 1.48672 1.80839 1.58450 1.27079 1.74952 1.24914 1.21967 1.00241 0.99816 0.79673 1.22656 0.92368 1.03718 0.97423 1.22784 0.97589 1.01932 0.94229 1.22353 0.81521 0.98190 1.00320 1.21431 0.96726 0.91157 1.03824 1.22037 0.93779 0.97959 0.93199 0.92736 0.98869 0.97626 0.95934 0.91851 0.94089 0.89468 0.87924 0.90112 0.82848 0.91624 0.90455 0.89412 0.88683 0.88138 0.90794 0.90074 0.90879 0.90521 0.87893 0.94811 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.56 13.29 21.45 0.28 -55.28 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 6 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.55 -30.73 9.11 25.60 0.23 -30.50 16 8 H 0.06 3.15 7.74 -2.91 -0.02 3.13 16 9 C 0.03 1.52 4.22 29.84 0.13 1.65 16 10 C 0.08 3.23 5.21 86.30 0.45 3.68 16 11 N -0.55 -19.39 4.81 -896.39 -4.31 -23.70 16 12 C 0.06 1.69 5.42 86.33 0.47 2.16 16 13 C -0.11 -2.50 5.39 30.65 0.17 -2.34 16 14 C -0.57 -12.31 2.94 30.68 0.09 -12.22 16 15 S 2.64 61.76 5.10 -56.49 -0.29 61.47 16 16 O -0.98 -29.45 17.27 -127.65 -2.20 -31.65 16 17 O -0.98 -27.41 17.60 -127.65 -2.25 -29.65 16 18 N -1.01 -18.60 3.22 -506.43 -1.63 -20.23 16 19 C 0.11 1.51 6.89 86.73 0.60 2.11 16 20 C -0.12 -1.15 6.95 31.78 0.22 -0.93 16 21 C -0.13 -1.37 7.08 31.99 0.23 -1.15 16 22 C 0.10 1.60 6.67 86.85 0.58 2.18 16 23 C -0.09 -2.30 5.14 30.65 0.16 -2.14 16 24 C 0.06 1.93 4.85 86.33 0.42 2.35 16 25 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 26 H -0.01 -0.41 8.14 -2.38 -0.02 -0.43 16 27 H 0.01 0.30 6.21 -2.38 -0.01 0.29 16 28 H 0.02 0.92 8.08 -2.39 -0.02 0.90 16 29 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 30 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 2.21 8.12 -2.39 -0.02 2.19 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.15 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 36 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.08 1.12 6.82 -2.39 -0.02 1.10 16 42 H 0.07 1.33 7.66 -2.39 -0.02 1.31 16 43 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.10 1.98 6.20 -2.38 -0.01 1.96 16 45 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 46 H 0.07 2.70 5.81 -2.39 -0.01 2.69 16 Total: -1.00 -73.43 366.41 -3.23 -76.66 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 0.94 Total: 11.10 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.20 Total: -34.48 kcal Atomic # 7 Polarization: -93.56 SS G_CDS: -5.65 Total: -99.21 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -4.45 Total: -61.30 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 61.76 SS G_CDS: -0.29 Total: 61.47 kcal Total: -73.43 -3.23 -76.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373864573.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.170 kcal (2) G-P(sol) polarization free energy of solvation -73.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds