Wall clock time and date at job start Tue Mar 31 2020 10:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47172 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00516 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00293 * 3 2 1 7 7 C 1.37880 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00249 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46216 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31296 * 181.38947 * 10 9 7 12 12 N 1.46924 * 108.77058 * 305.35969 * 11 10 9 13 13 S 1.65602 * 120.63308 * 233.58386 * 12 11 10 14 14 O 1.42099 * 106.39899 * 337.31174 * 13 12 11 15 15 O 1.42096 * 106.40350 * 204.38898 * 13 12 11 16 16 N 1.65600 * 107.21329 * 90.84800 * 13 12 11 17 17 C 1.50167 * 120.53731 * 84.36640 * 16 13 12 18 18 C 1.46236 * 107.53604 * 109.60637 * 17 16 13 19 19 C 1.52523 * 114.27585 * 58.40848 * 18 17 16 20 20 C 1.50126 * 105.41533 * 270.59488 * 19 18 17 21 21 C 1.54835 * 110.81828 * 97.68431 * 20 19 18 22 22 C 1.43435 * 120.53766 * 264.38388 * 16 13 12 23 23 C 1.46932 * 118.73830 * 53.87045 * 12 11 10 24 24 C 1.53036 * 109.46019 * 300.06908 * 9 7 2 25 25 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.44782 * 60.03259 * 9 7 2 27 27 H 1.08997 * 109.49422 * 61.43478 * 10 9 7 28 28 H 1.09009 * 109.49452 * 301.33754 * 10 9 7 29 29 H 1.09002 * 109.58644 * 185.57935 * 11 10 9 30 30 H 1.08994 * 109.58723 * 65.15308 * 11 10 9 31 31 H 1.09003 * 109.84793 * 229.11769 * 17 16 13 32 32 H 1.09000 * 109.84848 * 350.09731 * 17 16 13 33 33 H 1.09005 * 108.52115 * 297.16878 * 18 17 16 34 34 H 1.09004 * 108.52741 * 179.64892 * 18 17 16 35 35 H 1.09000 * 110.25295 * 151.61995 * 19 18 17 36 36 H 1.09007 * 110.25100 * 29.56843 * 19 18 17 37 37 H 1.09006 * 109.20749 * 218.02807 * 20 19 18 38 38 H 1.09005 * 109.20556 * 337.33717 * 20 19 18 39 39 H 1.09000 * 109.36341 * 81.33617 * 21 20 19 40 40 H 1.09004 * 109.36026 * 200.92911 * 21 20 19 41 41 H 1.09003 * 108.15897 * 149.83131 * 22 16 13 42 42 H 1.08998 * 108.16028 * 33.26320 * 22 16 13 43 43 H 1.08994 * 109.58907 * 65.91837 * 23 12 11 44 44 H 1.09000 * 109.58835 * 186.35087 * 23 12 11 45 45 H 1.08998 * 109.49527 * 298.56592 * 24 9 7 46 46 H 1.09001 * 109.49644 * 58.66067 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0018 11 6 1.4767 -4.9866 -0.0369 12 7 0.5232 -5.0094 1.0807 13 16 0.5106 -6.2709 2.1535 14 8 1.1024 -7.3745 1.4820 15 8 -0.7957 -6.3101 2.7114 16 7 1.5359 -5.8720 3.3912 17 6 1.0563 -5.0292 4.5378 18 6 0.9810 -5.8911 5.7168 19 6 2.3017 -6.5540 6.0944 20 6 2.3293 -7.8493 5.3358 21 6 3.1567 -7.7075 4.0348 22 6 2.8967 -6.3255 3.3851 23 6 -0.4231 -3.8947 1.2248 24 6 0.3705 -2.5795 1.2485 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5566 -0.8907 27 1 2.8563 -3.6197 0.9001 28 1 2.8877 -3.5909 -0.8800 29 1 2.1753 -5.8175 0.0619 30 1 0.9366 -5.0707 -0.9799 31 1 1.7589 -4.2157 4.7184 32 1 0.0700 -4.6240 4.3121 33 1 0.2432 -6.6712 5.5289 34 1 0.6398 -5.2930 6.5618 35 1 2.3353 -6.7443 7.1671 36 1 3.1393 -5.9238 5.7953 37 1 2.7751 -8.6222 5.9620 38 1 1.3092 -8.1382 5.0824 39 1 4.2170 -7.8030 4.2687 40 1 2.8704 -8.4944 3.3369 41 1 3.5038 -5.5854 3.9065 42 1 3.2363 -6.3673 2.3503 43 1 -1.1150 -3.8916 0.3826 44 1 -0.9785 -4.0048 2.1562 45 1 0.9984 -2.5470 2.1389 46 1 -0.3220 -1.7379 1.2602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397194049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:38 Heat of formation + Delta-G solvation = -86.871451 kcal Electronic energy + Delta-G solvation = -26963.989396 eV Core-core repulsion = 23400.632166 eV Total energy + Delta-G solvation = -3563.357230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -38.91788 -37.69938 -37.08631 -35.56955 -33.50720 -33.41928 -32.57635 -30.85855 -30.06261 -26.40978 -25.73687 -25.18060 -22.50724 -22.31946 -21.63939 -20.28938 -19.44093 -18.22564 -17.51796 -17.21201 -16.27284 -16.21827 -15.27597 -14.97454 -14.76160 -14.57810 -14.09635 -13.90955 -13.42912 -13.25308 -13.10532 -12.90830 -12.76023 -12.67903 -12.43548 -12.20776 -12.10572 -11.90278 -11.81819 -11.36972 -11.33692 -11.01152 -10.96997 -10.81997 -10.66750 -10.58508 -10.54288 -10.40764 -10.36931 -10.08058 -9.61041 -9.28392 -9.03400 -8.92376 -8.42005 -8.25333 -6.03263 -4.09770 0.85018 3.08398 3.26624 3.34114 3.36508 3.72523 4.39462 4.48951 4.58033 4.72045 4.79335 4.99077 5.09912 5.17571 5.19153 5.24146 5.26848 5.58048 5.61361 5.71025 5.73275 5.74269 5.82052 5.90950 5.97457 6.07899 6.08780 6.11199 6.15219 6.16041 6.25103 6.27522 6.35345 6.42186 6.45316 6.67875 6.74331 6.94693 7.08243 7.19337 7.40782 7.68993 7.93371 8.05903 8.40006 8.93977 9.55317 11.02009 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004380 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.593468 B = 6390.706913 C = 6809.113643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.062 3.938 3 Si 0.889 3.111 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.512 4.512 8 H 0.054 0.946 9 C 0.051 3.949 10 C -0.122 4.122 11 C 0.124 3.876 12 N -0.998 5.998 13 S 2.782 3.218 14 O -0.984 6.984 15 O -0.984 6.984 16 N -1.000 6.000 17 C 0.131 3.869 18 C -0.142 4.142 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.142 4.142 22 C 0.128 3.872 23 C 0.119 3.881 24 C -0.121 4.121 25 H 0.260 0.740 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.873 -11.900 9.863 15.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.072 0.928 9 C 0.032 3.968 10 C -0.161 4.161 11 C -0.002 4.002 12 N -0.840 5.840 13 S 2.791 3.209 14 O -0.968 6.968 15 O -0.968 6.968 16 N -0.839 5.839 17 C 0.008 3.992 18 C -0.180 4.180 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.181 4.181 22 C 0.001 3.999 23 C -0.005 4.005 24 C -0.160 4.160 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.200 -12.576 9.774 16.246 hybrid contribution 0.695 1.324 0.028 1.496 sum 3.895 -11.252 9.802 15.423 Atomic orbital electron populations 1.69841 1.05833 1.26432 1.50829 1.24956 0.94830 0.98986 0.95157 0.86643 0.79851 0.83674 0.78072 1.20771 1.21301 1.20057 1.21204 0.92850 0.90635 1.50342 0.92805 1.18577 0.92596 0.91450 0.94135 1.21993 0.98803 0.94579 1.00704 1.21481 0.90833 0.99181 0.88661 1.57979 1.46073 1.39228 1.40723 1.01944 0.73084 0.73321 0.72517 1.93556 1.78799 1.50328 1.74123 1.93565 1.37697 1.86800 1.78703 1.58139 1.23632 1.65340 1.36752 1.20770 1.00652 0.92824 0.84994 1.20871 0.98386 1.00632 0.98140 1.21030 0.97838 0.97136 0.99339 1.21553 1.00557 0.97491 0.96097 1.22738 1.00128 0.98076 0.97186 1.20643 0.82458 0.95611 1.01199 1.21765 0.90719 0.87183 1.00873 1.22062 0.99844 0.94713 0.99363 0.92985 0.95520 0.93006 0.92362 0.91019 0.91773 0.90388 0.89332 0.91424 0.91434 0.91797 0.90959 0.92594 0.92187 0.90869 0.91256 0.90949 0.91364 0.91832 0.91359 0.94313 0.88043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.19 11.31 55.43 0.63 -23.56 16 2 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.51 -13.27 8.56 -34.44 -0.29 -13.56 16 8 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 9 C 0.05 1.18 2.06 -91.73 -0.19 0.99 16 10 C -0.12 -2.33 5.30 -26.61 -0.14 -2.47 16 11 C 0.12 2.11 6.38 -3.71 -0.02 2.09 16 12 N -1.00 -17.34 3.34 -113.27 -0.38 -17.72 16 13 S 2.78 46.19 6.04 -107.50 -0.65 45.54 16 14 O -0.98 -17.83 15.77 -57.17 -0.90 -18.73 16 15 O -0.98 -18.34 15.88 -57.17 -0.91 -19.24 16 16 N -1.00 -13.50 2.94 -116.10 -0.34 -13.84 16 17 C 0.13 1.57 5.92 -5.21 -0.03 1.53 16 18 C -0.14 -1.47 5.20 -30.19 -0.16 -1.63 16 19 C -0.12 -1.06 5.76 -28.41 -0.16 -1.23 16 20 C -0.12 -1.20 5.65 -27.19 -0.15 -1.35 16 21 C -0.14 -1.50 6.41 -24.76 -0.16 -1.66 16 22 C 0.13 1.52 4.76 -4.66 -0.02 1.50 16 23 C 0.12 2.21 6.40 -3.48 -0.02 2.19 16 24 C -0.12 -2.59 5.17 -26.39 -0.14 -2.73 16 25 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 26 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 29 H 0.07 1.11 7.10 -51.93 -0.37 0.74 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.08 0.84 8.12 -51.93 -0.42 0.42 16 32 H 0.09 1.11 7.46 -51.93 -0.39 0.73 16 33 H 0.07 0.79 6.93 -51.93 -0.36 0.43 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.64 6.29 -51.93 -0.33 0.32 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.69 6.83 -51.93 -0.35 0.33 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.74 6.89 -51.93 -0.36 0.39 16 42 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.18 7.14 -51.93 -0.37 0.81 16 45 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.10 2.47 6.03 -51.93 -0.31 2.16 16 LS Contribution 355.07 15.07 5.35 5.35 Total: -1.00 -29.65 355.07 -11.66 -41.31 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: -7.85 Total: 0.20 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -1.59 Total: -14.80 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.09 Total: -55.12 kcal Atomic # 8 Polarization: -36.17 SS G_CDS: -1.81 Total: -37.98 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 46.19 SS G_CDS: -0.65 Total: 45.54 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -29.65 -11.66 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397194049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.558 kcal (2) G-P(sol) polarization free energy of solvation -29.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds