Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99956 * 2 1 4 4 H 1.48498 * 109.47172 * 270.00187 * 3 2 1 5 5 H 1.48500 * 109.47109 * 30.00516 * 3 2 1 6 6 H 1.48504 * 109.46951 * 150.00293 * 3 2 1 7 7 C 1.37880 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00249 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00011 * 359.97438 * 7 2 1 10 10 C 1.53038 * 109.46216 * 179.97438 * 9 7 2 11 11 C 1.53193 * 109.31296 * 181.38947 * 10 9 7 12 12 N 1.46924 * 108.77058 * 305.35969 * 11 10 9 13 13 S 1.65602 * 120.63308 * 233.58386 * 12 11 10 14 14 O 1.42099 * 106.39899 * 337.31174 * 13 12 11 15 15 O 1.42096 * 106.40350 * 204.38898 * 13 12 11 16 16 N 1.65600 * 107.21329 * 90.84800 * 13 12 11 17 17 C 1.50167 * 120.53731 * 84.36640 * 16 13 12 18 18 C 1.46236 * 107.53604 * 109.60637 * 17 16 13 19 19 C 1.52523 * 114.27585 * 58.40848 * 18 17 16 20 20 C 1.50126 * 105.41533 * 270.59488 * 19 18 17 21 21 C 1.54835 * 110.81828 * 97.68431 * 20 19 18 22 22 C 1.43435 * 120.53766 * 264.38388 * 16 13 12 23 23 C 1.46932 * 118.73830 * 53.87045 * 12 11 10 24 24 C 1.53036 * 109.46019 * 300.06908 * 9 7 2 25 25 H 0.96999 * 120.00333 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.44782 * 60.03259 * 9 7 2 27 27 H 1.08997 * 109.49422 * 61.43478 * 10 9 7 28 28 H 1.09009 * 109.49452 * 301.33754 * 10 9 7 29 29 H 1.09002 * 109.58644 * 185.57935 * 11 10 9 30 30 H 1.08994 * 109.58723 * 65.15308 * 11 10 9 31 31 H 1.09003 * 109.84793 * 229.11769 * 17 16 13 32 32 H 1.09000 * 109.84848 * 350.09731 * 17 16 13 33 33 H 1.09005 * 108.52115 * 297.16878 * 18 17 16 34 34 H 1.09004 * 108.52741 * 179.64892 * 18 17 16 35 35 H 1.09000 * 110.25295 * 151.61995 * 19 18 17 36 36 H 1.09007 * 110.25100 * 29.56843 * 19 18 17 37 37 H 1.09006 * 109.20749 * 218.02807 * 20 19 18 38 38 H 1.09005 * 109.20556 * 337.33717 * 20 19 18 39 39 H 1.09000 * 109.36341 * 81.33617 * 21 20 19 40 40 H 1.09004 * 109.36026 * 200.92911 * 21 20 19 41 41 H 1.09003 * 108.15897 * 149.83131 * 22 16 13 42 42 H 1.08998 * 108.16028 * 33.26320 * 22 16 13 43 43 H 1.08994 * 109.58907 * 65.91837 * 23 12 11 44 44 H 1.09000 * 109.58835 * 186.35087 * 23 12 11 45 45 H 1.08998 * 109.49527 * 298.56592 * 24 9 7 46 46 H 1.09001 * 109.49644 * 58.66067 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0018 11 6 1.4767 -4.9866 -0.0369 12 7 0.5232 -5.0094 1.0807 13 16 0.5106 -6.2709 2.1535 14 8 1.1024 -7.3745 1.4820 15 8 -0.7957 -6.3101 2.7114 16 7 1.5359 -5.8720 3.3912 17 6 1.0563 -5.0292 4.5378 18 6 0.9810 -5.8911 5.7168 19 6 2.3017 -6.5540 6.0944 20 6 2.3293 -7.8493 5.3358 21 6 3.1567 -7.7075 4.0348 22 6 2.8967 -6.3255 3.3851 23 6 -0.4231 -3.8947 1.2248 24 6 0.3705 -2.5795 1.2485 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5566 -0.8907 27 1 2.8563 -3.6197 0.9001 28 1 2.8877 -3.5909 -0.8800 29 1 2.1753 -5.8175 0.0619 30 1 0.9366 -5.0707 -0.9799 31 1 1.7589 -4.2157 4.7184 32 1 0.0700 -4.6240 4.3121 33 1 0.2432 -6.6712 5.5289 34 1 0.6398 -5.2930 6.5618 35 1 2.3353 -6.7443 7.1671 36 1 3.1393 -5.9238 5.7953 37 1 2.7751 -8.6222 5.9620 38 1 1.3092 -8.1382 5.0824 39 1 4.2170 -7.8030 4.2687 40 1 2.8704 -8.4944 3.3369 41 1 3.5038 -5.5854 3.9065 42 1 3.2363 -6.3673 2.3503 43 1 -1.1150 -3.8916 0.3826 44 1 -0.9785 -4.0048 2.1562 45 1 0.9984 -2.5470 2.1389 46 1 -0.3220 -1.7379 1.2602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397194049.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = -104.585563 kcal Electronic energy + Delta-G solvation = -26964.757537 eV Core-core repulsion = 23400.632166 eV Total energy + Delta-G solvation = -3564.125372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.79986 -39.27829 -38.47630 -36.97125 -35.25658 -34.41865 -33.44046 -32.60025 -31.66415 -27.61737 -27.27899 -26.03916 -24.15576 -23.92369 -22.60239 -21.26668 -20.86000 -19.62948 -18.71024 -18.63008 -18.11041 -17.38578 -16.51106 -16.35889 -15.99472 -15.59867 -15.34051 -15.13385 -14.90369 -14.79957 -14.49191 -14.39669 -14.05178 -13.70908 -13.53062 -13.49919 -13.37395 -13.29800 -13.16107 -12.93109 -12.80777 -12.57544 -12.40502 -12.22865 -12.06310 -11.87770 -11.74528 -11.41229 -11.39078 -11.33614 -11.21991 -10.95681 -10.78140 -10.36652 -10.02019 -9.82412 -8.03114 -6.16462 -0.46118 1.43581 1.46059 1.54277 1.84134 2.43638 2.47267 3.22172 3.24117 3.63672 3.77145 3.85125 4.02659 4.18383 4.26062 4.26746 4.34754 4.36890 4.40794 4.52115 4.63426 4.72908 4.75862 4.77134 4.82970 4.87796 4.93613 4.94470 4.98329 5.12890 5.21497 5.27296 5.31267 5.32744 5.35867 5.38690 5.43780 5.49741 5.57670 5.65317 5.72785 5.85292 6.06058 6.22116 6.44280 6.95207 7.51571 9.00197 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.018856 B = 0.004380 C = 0.004111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.593468 B = 6390.706913 C = 6809.113643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.948 3.052 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.046 3.954 10 C -0.112 4.112 11 C 0.125 3.875 12 N -1.001 6.001 13 S 2.793 3.207 14 O -0.999 6.999 15 O -1.007 7.007 16 N -0.995 5.995 17 C 0.126 3.874 18 C -0.142 4.142 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.140 4.140 22 C 0.118 3.882 23 C 0.128 3.872 24 C -0.109 4.109 25 H 0.259 0.741 26 H -0.005 1.005 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.065 0.935 31 H 0.094 0.906 32 H 0.077 0.923 33 H 0.050 0.950 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.039 0.961 39 H 0.098 0.902 40 H 0.051 0.949 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.082 0.918 45 H 0.041 0.959 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.637 -12.240 11.354 17.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.566 4.566 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.151 4.151 11 C 0.000 4.000 12 N -0.841 5.841 13 S 2.803 3.197 14 O -0.984 6.984 15 O -0.991 6.991 16 N -0.836 5.836 17 C 0.003 3.997 18 C -0.181 4.181 19 C -0.148 4.148 20 C -0.159 4.159 21 C -0.180 4.180 22 C -0.009 4.009 23 C 0.003 3.997 24 C -0.148 4.148 25 H 0.068 0.932 26 H 0.013 0.987 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.069 0.931 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.112 0.888 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.100 0.900 45 H 0.060 0.940 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.970 -12.928 11.256 17.847 hybrid contribution 0.165 1.413 -0.422 1.484 sum 5.135 -11.515 10.833 16.623 Atomic orbital electron populations 1.69980 1.06996 1.26943 1.51573 1.25649 0.95557 1.01985 0.95083 0.85722 0.78865 0.80065 0.77927 1.20699 1.21211 1.19331 1.21568 0.92993 0.92049 1.50009 0.92986 1.18570 0.93118 0.92228 0.93381 1.21843 0.98031 0.93973 1.01232 1.21490 0.90979 0.98716 0.88786 1.57979 1.45991 1.38743 1.41429 1.01471 0.72806 0.72851 0.72545 1.93529 1.78955 1.50987 1.74885 1.93530 1.39483 1.87038 1.79012 1.57935 1.24061 1.65537 1.36070 1.20978 1.00543 0.93389 0.84824 1.20865 0.98949 1.00207 0.98042 1.21034 0.97163 0.96404 1.00219 1.21572 0.99410 0.98642 0.96237 1.22751 1.01705 0.96596 0.96934 1.20901 0.81457 0.97020 1.01524 1.21545 0.90500 0.86267 1.01358 1.21819 0.99184 0.95191 0.98655 0.93154 0.98731 0.92366 0.91899 0.88859 0.91673 0.88750 0.90434 0.93141 0.89591 0.90121 0.90106 0.91031 0.94220 0.88392 0.93040 0.88758 0.91877 0.92520 0.89992 0.94021 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.59 11.31 21.45 0.24 -50.34 16 2 C 0.02 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.95 41.98 29.54 68.60 2.03 44.00 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.53 -27.44 8.56 25.60 0.22 -27.22 16 8 H 0.05 2.66 7.74 -2.91 -0.02 2.63 16 9 C 0.05 2.13 2.06 -11.51 -0.02 2.11 16 10 C -0.11 -4.18 5.30 30.67 0.16 -4.02 16 11 C 0.13 4.15 6.38 86.36 0.55 4.70 16 12 N -1.00 -34.10 3.34 -512.28 -1.71 -35.81 16 13 S 2.79 90.59 6.04 -56.49 -0.34 90.25 16 14 O -1.00 -35.34 15.77 -128.00 -2.02 -37.35 16 15 O -1.01 -37.25 15.88 -128.00 -2.03 -39.28 16 16 N -1.00 -25.30 2.94 -521.23 -1.53 -26.83 16 17 C 0.13 2.77 5.92 83.58 0.49 3.26 16 18 C -0.14 -2.65 5.20 28.35 0.15 -2.51 16 19 C -0.11 -1.70 5.76 29.51 0.17 -1.53 16 20 C -0.12 -2.16 5.65 30.29 0.17 -1.99 16 21 C -0.14 -2.65 6.41 31.87 0.20 -2.44 16 22 C 0.12 2.51 4.76 87.60 0.42 2.92 16 23 C 0.13 4.79 6.40 86.51 0.55 5.34 16 24 C -0.11 -4.74 5.17 30.82 0.16 -4.58 16 25 H 0.26 13.77 8.31 -92.71 -0.77 13.00 16 26 H -0.01 -0.29 8.14 -2.38 -0.02 -0.31 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.09 2.71 7.10 -2.39 -0.02 2.69 16 30 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.09 1.78 8.12 -2.39 -0.02 1.76 16 32 H 0.08 1.88 7.46 -2.39 -0.02 1.86 16 33 H 0.05 1.13 6.93 -2.38 -0.02 1.11 16 34 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 35 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.12 6.29 -2.38 -0.01 1.11 16 37 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.04 0.87 6.83 -2.38 -0.02 0.85 16 39 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.09 1.62 6.89 -2.39 -0.02 1.60 16 42 H 0.06 1.41 7.66 -2.39 -0.02 1.39 16 43 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.08 2.82 7.14 -2.39 -0.02 2.80 16 45 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 46 H 0.07 3.56 6.03 -2.39 -0.01 3.55 16 Total: -1.00 -63.45 355.07 -0.75 -64.20 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 0.95 Total: 15.84 kcal Atomic # 6 Polarization: -28.34 SS G_CDS: 3.67 Total: -24.67 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -3.00 Total: -112.99 kcal Atomic # 8 Polarization: -72.58 SS G_CDS: -4.05 Total: -76.63 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Atomic # 16 Polarization: 90.59 SS G_CDS: -0.34 Total: 90.25 kcal Total: -63.45 -0.75 -64.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397194049.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.386 kcal (2) G-P(sol) polarization free energy of solvation -63.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds