Wall clock time and date at job start Tue Mar 31 2020 12:17:26
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.38238 * 120.00073 * 2 1
4 4 C 1.38231 * 119.99958 * 179.97438 * 3 2 1
5 5 C 1.38229 * 120.00140 * 0.02562 * 4 3 2
6 6 C 1.50705 * 119.99962 * 179.97438 * 5 4 3
7 7 N 1.46499 * 109.47145 * 84.49541 * 6 5 4
8 8 C 1.34421 * 124.34834 * 85.36200 * 7 6 5
9 9 O 1.21280 * 124.94151 * 359.63295 * 8 7 6
10 10 C 1.51285 * 110.11478 * 179.59134 * 8 7 6
11 11 C 1.54628 * 104.19549 * 343.74848 * 10 8 7
12 12 C 1.46765 * 124.35247 * 265.36045 * 7 6 5
13 13 H 1.09001 * 110.31467 * 77.97790 * 12 7 6
14 14 C 1.50694 * 110.24398 * 316.02009 * 12 7 6
15 15 O 1.21283 * 120.00468 * 336.11526 * 14 12 7
16 16 N 1.34774 * 120.00093 * 156.11598 * 14 12 7
17 17 C 1.46502 * 120.00107 * 180.02562 * 16 14 12
18 18 C 1.50701 * 109.47145 * 179.97438 * 17 16 14
19 19 H 1.08007 * 119.99969 * 359.97438 * 18 17 16
20 20 C 1.37875 * 120.00430 * 179.97438 * 18 17 16
21 21 N 1.31518 * 119.99774 * 0.02562 * 20 18 17
22 22 Si 1.86798 * 120.00348 * 179.97438 * 20 18 17
23 23 H 1.48503 * 109.47043 * 90.00383 * 22 20 18
24 24 H 1.48503 * 109.47209 * 210.00297 * 22 20 18
25 25 H 1.48494 * 109.47199 * 330.00363 * 22 20 18
26 26 C 1.38235 * 120.00092 * 0.24629 * 5 4 3
27 27 C 1.38233 * 119.99929 * 179.97438 * 2 1 3
28 28 H 1.08999 * 109.46789 * 90.00330 * 1 2 3
29 29 H 1.08996 * 109.46896 * 209.99879 * 1 2 3
30 30 H 1.08996 * 109.47145 * 330.00082 * 1 2 3
31 31 H 1.07996 * 120.00053 * 359.97438 * 3 2 1
32 32 H 1.08004 * 120.00041 * 179.97438 * 4 3 2
33 33 H 1.09000 * 109.47315 * 324.49607 * 6 5 4
34 34 H 1.09001 * 109.47211 * 204.49392 * 6 5 4
35 35 H 1.09003 * 110.48535 * 225.06991 * 10 8 7
36 36 H 1.08999 * 110.59801 * 102.48331 * 10 8 7
37 37 H 1.08997 * 110.97037 * 266.67970 * 11 10 8
38 38 H 1.08994 * 110.99863 * 142.93261 * 11 10 8
39 39 H 0.96998 * 120.00097 * 359.97438 * 16 14 12
40 40 H 1.08993 * 109.47524 * 59.99787 * 17 16 14
41 41 H 1.09001 * 109.46844 * 299.99303 * 17 16 14
42 42 H 0.96993 * 120.00035 * 179.97438 * 21 20 18
43 43 H 1.08003 * 120.00108 * 179.73072 * 26 5 4
44 44 H 1.08001 * 120.00318 * 359.97438 * 27 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1972 0.0000
4 6 3.5805 1.1971 0.0005
5 6 4.2717 0.0000 0.0005
6 6 5.7787 0.0001 0.0005
7 7 6.2670 0.1326 1.3754
8 6 6.4353 -0.8971 2.2230
9 8 6.1998 -2.0577 1.9615
10 6 6.9619 -0.3975 3.5503
11 6 7.4789 1.0267 3.2414
12 6 6.6355 1.4065 2.0042
13 1 5.7415 1.9503 2.3096
14 6 7.4528 2.2408 1.0520
15 8 8.0730 1.7071 0.1568
16 7 7.4946 3.5803 1.1952
17 6 8.2887 4.3915 0.2691
18 6 8.1668 5.8461 0.6440
19 1 7.5582 6.1372 1.4875
20 6 8.8320 6.8053 -0.0897
21 7 9.5727 6.4509 -1.1171
22 14 8.6803 8.6083 0.3746
23 1 9.7501 8.9621 1.3419
24 1 8.8175 9.4464 -0.8436
25 1 7.3528 8.8497 0.9946
26 6 3.5805 -1.1971 -0.0051
27 6 2.1981 -1.1971 0.0005
28 1 -0.3633 -0.0001 -1.0277
29 1 -0.3633 -0.8900 0.5138
30 1 -0.3633 0.8900 0.5138
31 1 1.6582 2.1325 -0.0004
32 1 4.1205 2.1325 0.0001
33 1 6.1421 0.8367 -0.5963
34 1 6.1421 -0.9351 -0.4255
35 1 7.7766 -1.0315 3.9005
36 1 6.1628 -0.3610 4.2907
37 1 8.5416 1.0120 2.9994
38 1 7.2794 1.7034 4.0722
39 1 6.9984 4.0073 1.9109
40 1 7.9221 4.2467 -0.7470
41 1 9.3342 4.0880 0.3250
42 1 10.0404 7.1257 -1.6335
43 1 4.1205 -2.1324 -0.0095
44 1 1.6582 -2.1325 0.0014
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000427608239.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:17:26
Heat of formation + Delta-G solvation = -54.762785 kcal
Electronic energy + Delta-G solvation = -26192.041233 eV
Core-core repulsion = 22494.632388 eV
Total energy + Delta-G solvation = -3697.408845 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-40.86959 -39.28687 -38.55655 -36.07717 -34.44061 -34.19722 -32.45056 -31.72893
-30.94600 -28.85553 -28.15500 -26.75290 -24.79038 -23.19176 -22.78234 -21.98007
-21.01446 -20.12112 -19.24303 -17.67662 -16.92361 -16.45228 -15.94378 -15.73998
-15.29289 -15.19032 -15.12862 -14.70554 -14.60209 -14.03507 -13.91894 -13.54062
-13.47733 -13.43092 -13.11628 -12.77226 -12.65053 -12.53145 -12.25217 -12.05634
-11.93396 -11.69709 -11.59165 -11.28788 -11.16481 -11.05141 -10.95704 -10.91438
-10.39636 -9.83272 -9.50568 -9.45977 -8.93522 -8.83255 -8.62531 -8.55022
-8.04082 -6.24408 -4.32121 1.20638 1.39587 2.60568 2.87314 3.14510
3.19081 3.25791 3.27637 3.76301 3.90110 4.26554 4.29432 4.44195
4.71594 4.75447 4.81725 4.91987 4.92403 5.01543 5.09646 5.12127
5.26785 5.38151 5.40513 5.41959 5.45491 5.56183 5.63883 5.68062
5.72958 5.85086 5.88372 6.04738 6.05547 6.38537 6.44755 6.53591
6.60767 6.98034 7.11793 7.19621 7.25490 7.39674 7.55302 7.87125
8.18259 8.45020 8.65412 8.90351 9.34746 10.85611
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.012503 B = 0.003513 C = 0.002961
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2238.880325 B = 7967.462431 C = 9452.879824
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.087 4.087
3 C -0.124 4.124
4 C -0.098 4.098
5 C -0.111 4.111
6 C 0.166 3.834
7 N -0.586 5.586
8 C 0.521 3.479
9 O -0.534 6.534
10 C -0.152 4.152
11 C -0.119 4.119
12 C 0.110 3.890
13 H 0.097 0.903
14 C 0.491 3.509
15 O -0.541 6.541
16 N -0.704 5.704
17 C 0.250 3.750
18 C -0.545 4.545
19 H 0.064 0.936
20 C 0.065 3.935
21 N -0.884 5.884
22 Si 0.904 3.096
23 H -0.278 1.278
24 H -0.284 1.284
25 H -0.272 1.272
26 C -0.092 4.092
27 C -0.126 4.126
28 H 0.069 0.931
29 H 0.064 0.936
30 H 0.065 0.935
31 H 0.121 0.879
32 H 0.123 0.877
33 H 0.101 0.899
34 H 0.087 0.913
35 H 0.104 0.896
36 H 0.105 0.895
37 H 0.090 0.910
38 H 0.099 0.901
39 H 0.392 0.608
40 H 0.028 0.972
41 H 0.028 0.972
42 H 0.267 0.733
43 H 0.125 0.875
44 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.907 -11.130 7.786 19.440
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.088 4.088
3 C -0.142 4.142
4 C -0.116 4.116
5 C -0.112 4.112
6 C 0.044 3.956
7 N -0.319 5.319
8 C 0.309 3.691
9 O -0.411 6.411
10 C -0.192 4.192
11 C -0.157 4.157
12 C 0.002 3.998
13 H 0.115 0.885
14 C 0.274 3.726
15 O -0.419 6.419
16 N -0.353 5.353
17 C 0.130 3.870
18 C -0.584 4.584
19 H 0.082 0.918
20 C -0.139 4.139
21 N -0.521 5.521
22 Si 0.731 3.269
23 H -0.204 1.204
24 H -0.210 1.210
25 H -0.197 1.197
26 C -0.110 4.110
27 C -0.144 4.144
28 H 0.087 0.913
29 H 0.083 0.917
30 H 0.084 0.916
31 H 0.139 0.861
32 H 0.141 0.859
33 H 0.119 0.881
34 H 0.106 0.894
35 H 0.122 0.878
36 H 0.123 0.877
37 H 0.108 0.892
38 H 0.117 0.883
39 H 0.225 0.775
40 H 0.046 0.954
41 H 0.046 0.954
42 H 0.076 0.924
43 H 0.143 0.857
44 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -13.453 -12.028 6.743 19.264
hybrid contribution -0.208 1.420 0.450 1.504
sum -13.661 -10.607 7.193 18.732
Atomic orbital electron populations
1.20782 0.91384 1.02608 1.02224 1.19937 0.95945 0.93293 0.99591
1.21010 0.94102 0.97488 1.01583 1.21103 0.94190 0.97696 0.98614
1.20295 0.96099 0.93435 1.01400 1.20338 0.88534 1.04830 0.81865
1.47924 1.64033 1.06760 1.13159 1.20818 0.76777 0.84826 0.86657
1.90688 1.52670 1.17542 1.80174 1.22343 1.03075 0.97432 0.96399
1.22572 1.00828 0.96241 0.96041 1.21733 0.98497 0.86193 0.93421
0.88509 1.20413 0.82889 0.83528 0.85795 1.90698 1.44979 1.72139
1.34124 1.46495 1.49648 1.05525 1.33614 1.19144 0.90783 0.88703
0.88378 1.21193 1.31192 0.90719 1.15261 0.91827 1.24948 0.94714
0.99626 0.94653 1.69966 1.29821 1.34364 1.17994 0.86414 0.78579
0.83857 0.78065 1.20424 1.20984 1.19709 1.21144 0.94042 0.97866
0.97978 1.21003 0.94140 0.97397 1.01861 0.91251 0.91707 0.91604
0.86065 0.85943 0.88093 0.89420 0.87801 0.87686 0.89165 0.88275
0.77524 0.95422 0.95405 0.92360 0.85750 0.86279
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16
2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.57 16
3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16
4 C -0.10 -1.26 9.72 -39.59 -0.38 -1.64 16
5 C -0.11 -1.52 5.46 -104.62 -0.57 -2.09 16
6 C 0.17 2.48 5.46 -5.19 -0.03 2.46 16
7 N -0.59 -8.49 2.58 -167.56 -0.43 -8.92 16
8 C 0.52 7.60 8.02 -10.86 -0.09 7.51 16
9 O -0.53 -9.36 17.66 5.56 0.10 -9.27 16
10 C -0.15 -1.55 6.86 -26.74 -0.18 -1.74 16
11 C -0.12 -1.23 6.67 -25.10 -0.17 -1.39 16
12 C 0.11 1.43 3.70 -68.17 -0.25 1.18 16
13 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16
14 C 0.49 8.71 6.32 -10.99 -0.07 8.64 16
15 O -0.54 -11.90 15.04 5.55 0.08 -11.82 16
16 N -0.70 -13.19 5.55 -61.48 -0.34 -13.53 16
17 C 0.25 6.18 5.43 -5.19 -0.03 6.16 16
18 C -0.55 -13.96 9.28 -34.44 -0.32 -14.28 16
19 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16
20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16
21 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16
22 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16
23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16
24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16
25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16
26 C -0.09 -1.20 9.68 -39.58 -0.38 -1.58 16
27 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16
28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16
29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16
30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16
31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16
32 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16
33 H 0.10 1.67 6.25 -51.93 -0.32 1.35 16
34 H 0.09 1.35 7.94 -51.93 -0.41 0.93 16
35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16
36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16
37 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16
38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16
39 H 0.39 6.12 8.32 -40.82 -0.34 5.78 16
40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16
42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16
43 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16
44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16
LS Contribution 374.04 15.07 5.64 5.64
Total: -1.00 -32.79 374.04 -9.34 -42.13
By element:
Atomic # 1 Polarization: 12.61 SS G_CDS: -6.51 Total: 6.10 kcal
Atomic # 6 Polarization: 2.68 SS G_CDS: -3.60 Total: -0.91 kcal
Atomic # 7 Polarization: -46.86 SS G_CDS: -0.04 Total: -46.90 kcal
Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal
Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -32.79 -9.34 -42.13 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000427608239.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal
(2) G-P(sol) polarization free energy of solvation -32.788 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.418 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal
(6) G-S(sol) free energy of system = (1) + (5) -54.763 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds