Wall clock time and date at job start Tue Mar 31 2020 12:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 120.00073 * 2 1 4 4 C 1.38231 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00140 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99962 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47145 * 84.49541 * 6 5 4 8 8 C 1.34421 * 124.34834 * 85.36200 * 7 6 5 9 9 O 1.21280 * 124.94151 * 359.63295 * 8 7 6 10 10 C 1.51285 * 110.11478 * 179.59134 * 8 7 6 11 11 C 1.54628 * 104.19549 * 343.74848 * 10 8 7 12 12 C 1.46765 * 124.35247 * 265.36045 * 7 6 5 13 13 H 1.09001 * 110.31467 * 77.97790 * 12 7 6 14 14 C 1.50694 * 110.24398 * 316.02009 * 12 7 6 15 15 O 1.21283 * 120.00468 * 336.11526 * 14 12 7 16 16 N 1.34774 * 120.00093 * 156.11598 * 14 12 7 17 17 C 1.46502 * 120.00107 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.47145 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99969 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00430 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00348 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47043 * 90.00383 * 22 20 18 24 24 H 1.48503 * 109.47209 * 210.00297 * 22 20 18 25 25 H 1.48494 * 109.47199 * 330.00363 * 22 20 18 26 26 C 1.38235 * 120.00092 * 0.24629 * 5 4 3 27 27 C 1.38233 * 119.99929 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46789 * 90.00330 * 1 2 3 29 29 H 1.08996 * 109.46896 * 209.99879 * 1 2 3 30 30 H 1.08996 * 109.47145 * 330.00082 * 1 2 3 31 31 H 1.07996 * 120.00053 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00041 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47315 * 324.49607 * 6 5 4 34 34 H 1.09001 * 109.47211 * 204.49392 * 6 5 4 35 35 H 1.09003 * 110.48535 * 225.06991 * 10 8 7 36 36 H 1.08999 * 110.59801 * 102.48331 * 10 8 7 37 37 H 1.08997 * 110.97037 * 266.67970 * 11 10 8 38 38 H 1.08994 * 110.99863 * 142.93261 * 11 10 8 39 39 H 0.96998 * 120.00097 * 359.97438 * 16 14 12 40 40 H 1.08993 * 109.47524 * 59.99787 * 17 16 14 41 41 H 1.09001 * 109.46844 * 299.99303 * 17 16 14 42 42 H 0.96993 * 120.00035 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.00108 * 179.73072 * 26 5 4 44 44 H 1.08001 * 120.00318 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.2670 0.1326 1.3754 8 6 6.4353 -0.8971 2.2230 9 8 6.1998 -2.0577 1.9615 10 6 6.9619 -0.3975 3.5503 11 6 7.4789 1.0267 3.2414 12 6 6.6355 1.4065 2.0042 13 1 5.7415 1.9503 2.3096 14 6 7.4528 2.2408 1.0520 15 8 8.0730 1.7071 0.1568 16 7 7.4946 3.5803 1.1952 17 6 8.2887 4.3915 0.2691 18 6 8.1668 5.8461 0.6440 19 1 7.5582 6.1372 1.4875 20 6 8.8320 6.8053 -0.0897 21 7 9.5727 6.4509 -1.1171 22 14 8.6803 8.6083 0.3746 23 1 9.7501 8.9621 1.3419 24 1 8.8175 9.4464 -0.8436 25 1 7.3528 8.8497 0.9946 26 6 3.5805 -1.1971 -0.0051 27 6 2.1981 -1.1971 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1421 0.8367 -0.5963 34 1 6.1421 -0.9351 -0.4255 35 1 7.7766 -1.0315 3.9005 36 1 6.1628 -0.3610 4.2907 37 1 8.5416 1.0120 2.9994 38 1 7.2794 1.7034 4.0722 39 1 6.9984 4.0073 1.9109 40 1 7.9221 4.2467 -0.7470 41 1 9.3342 4.0880 0.3250 42 1 10.0404 7.1257 -1.6335 43 1 4.1205 -2.1324 -0.0095 44 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:26 Heat of formation + Delta-G solvation = -54.762785 kcal Electronic energy + Delta-G solvation = -26192.041233 eV Core-core repulsion = 22494.632388 eV Total energy + Delta-G solvation = -3697.408845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86959 -39.28687 -38.55655 -36.07717 -34.44061 -34.19722 -32.45056 -31.72893 -30.94600 -28.85553 -28.15500 -26.75290 -24.79038 -23.19176 -22.78234 -21.98007 -21.01446 -20.12112 -19.24303 -17.67662 -16.92361 -16.45228 -15.94378 -15.73998 -15.29289 -15.19032 -15.12862 -14.70554 -14.60209 -14.03507 -13.91894 -13.54062 -13.47733 -13.43092 -13.11628 -12.77226 -12.65053 -12.53145 -12.25217 -12.05634 -11.93396 -11.69709 -11.59165 -11.28788 -11.16481 -11.05141 -10.95704 -10.91438 -10.39636 -9.83272 -9.50568 -9.45977 -8.93522 -8.83255 -8.62531 -8.55022 -8.04082 -6.24408 -4.32121 1.20638 1.39587 2.60568 2.87314 3.14510 3.19081 3.25791 3.27637 3.76301 3.90110 4.26554 4.29432 4.44195 4.71594 4.75447 4.81725 4.91987 4.92403 5.01543 5.09646 5.12127 5.26785 5.38151 5.40513 5.41959 5.45491 5.56183 5.63883 5.68062 5.72958 5.85086 5.88372 6.04738 6.05547 6.38537 6.44755 6.53591 6.60767 6.98034 7.11793 7.19621 7.25490 7.39674 7.55302 7.87125 8.18259 8.45020 8.65412 8.90351 9.34746 10.85611 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.003513 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.880325 B = 7967.462431 C = 9452.879824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.087 4.087 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.111 4.111 6 C 0.166 3.834 7 N -0.586 5.586 8 C 0.521 3.479 9 O -0.534 6.534 10 C -0.152 4.152 11 C -0.119 4.119 12 C 0.110 3.890 13 H 0.097 0.903 14 C 0.491 3.509 15 O -0.541 6.541 16 N -0.704 5.704 17 C 0.250 3.750 18 C -0.545 4.545 19 H 0.064 0.936 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C -0.092 4.092 27 C -0.126 4.126 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.392 0.608 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.267 0.733 43 H 0.125 0.875 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.907 -11.130 7.786 19.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.088 4.088 3 C -0.142 4.142 4 C -0.116 4.116 5 C -0.112 4.112 6 C 0.044 3.956 7 N -0.319 5.319 8 C 0.309 3.691 9 O -0.411 6.411 10 C -0.192 4.192 11 C -0.157 4.157 12 C 0.002 3.998 13 H 0.115 0.885 14 C 0.274 3.726 15 O -0.419 6.419 16 N -0.353 5.353 17 C 0.130 3.870 18 C -0.584 4.584 19 H 0.082 0.918 20 C -0.139 4.139 21 N -0.521 5.521 22 Si 0.731 3.269 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.110 4.110 27 C -0.144 4.144 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.139 0.861 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.225 0.775 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.076 0.924 43 H 0.143 0.857 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.453 -12.028 6.743 19.264 hybrid contribution -0.208 1.420 0.450 1.504 sum -13.661 -10.607 7.193 18.732 Atomic orbital electron populations 1.20782 0.91384 1.02608 1.02224 1.19937 0.95945 0.93293 0.99591 1.21010 0.94102 0.97488 1.01583 1.21103 0.94190 0.97696 0.98614 1.20295 0.96099 0.93435 1.01400 1.20338 0.88534 1.04830 0.81865 1.47924 1.64033 1.06760 1.13159 1.20818 0.76777 0.84826 0.86657 1.90688 1.52670 1.17542 1.80174 1.22343 1.03075 0.97432 0.96399 1.22572 1.00828 0.96241 0.96041 1.21733 0.98497 0.86193 0.93421 0.88509 1.20413 0.82889 0.83528 0.85795 1.90698 1.44979 1.72139 1.34124 1.46495 1.49648 1.05525 1.33614 1.19144 0.90783 0.88703 0.88378 1.21193 1.31192 0.90719 1.15261 0.91827 1.24948 0.94714 0.99626 0.94653 1.69966 1.29821 1.34364 1.17994 0.86414 0.78579 0.83857 0.78065 1.20424 1.20984 1.19709 1.21144 0.94042 0.97866 0.97978 1.21003 0.94140 0.97397 1.01861 0.91251 0.91707 0.91604 0.86065 0.85943 0.88093 0.89420 0.87801 0.87686 0.89165 0.88275 0.77524 0.95422 0.95405 0.92360 0.85750 0.86279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.01 36.01 0.36 -0.54 16 2 C -0.09 -0.95 5.88 -104.62 -0.62 -1.57 16 3 C -0.12 -1.43 9.70 -39.58 -0.38 -1.81 16 4 C -0.10 -1.26 9.72 -39.59 -0.38 -1.64 16 5 C -0.11 -1.52 5.46 -104.62 -0.57 -2.09 16 6 C 0.17 2.48 5.46 -5.19 -0.03 2.46 16 7 N -0.59 -8.49 2.58 -167.56 -0.43 -8.92 16 8 C 0.52 7.60 8.02 -10.86 -0.09 7.51 16 9 O -0.53 -9.36 17.66 5.56 0.10 -9.27 16 10 C -0.15 -1.55 6.86 -26.74 -0.18 -1.74 16 11 C -0.12 -1.23 6.67 -25.10 -0.17 -1.39 16 12 C 0.11 1.43 3.70 -68.17 -0.25 1.18 16 13 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 14 C 0.49 8.71 6.32 -10.99 -0.07 8.64 16 15 O -0.54 -11.90 15.04 5.55 0.08 -11.82 16 16 N -0.70 -13.19 5.55 -61.48 -0.34 -13.53 16 17 C 0.25 6.18 5.43 -5.19 -0.03 6.16 16 18 C -0.55 -13.96 9.28 -34.44 -0.32 -14.28 16 19 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.88 -25.18 13.29 55.43 0.74 -24.44 16 22 Si 0.90 20.06 29.54 -169.99 -5.02 15.03 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 25 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 26 C -0.09 -1.20 9.68 -39.58 -0.38 -1.58 16 27 C -0.13 -1.45 9.70 -39.58 -0.38 -1.83 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.45 8.08 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 33 H 0.10 1.67 6.25 -51.93 -0.32 1.35 16 34 H 0.09 1.35 7.94 -51.93 -0.41 0.93 16 35 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 37 H 0.09 1.06 7.90 -51.93 -0.41 0.65 16 38 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.39 6.12 8.32 -40.82 -0.34 5.78 16 40 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 44 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -32.79 374.04 -9.34 -42.13 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -6.51 Total: 6.10 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -3.60 Total: -0.91 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: -0.04 Total: -46.90 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.18 Total: -21.09 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.79 -9.34 -42.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.630 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds