Wall clock time and date at job start Tue Mar 31 2020 12:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38238 * 120.00073 * 2 1 4 4 C 1.38231 * 119.99958 * 179.97438 * 3 2 1 5 5 C 1.38229 * 120.00140 * 0.02562 * 4 3 2 6 6 C 1.50705 * 119.99962 * 179.97438 * 5 4 3 7 7 N 1.46499 * 109.47145 * 84.49541 * 6 5 4 8 8 C 1.34421 * 124.34834 * 85.36200 * 7 6 5 9 9 O 1.21280 * 124.94151 * 359.63295 * 8 7 6 10 10 C 1.51285 * 110.11478 * 179.59134 * 8 7 6 11 11 C 1.54628 * 104.19549 * 343.74848 * 10 8 7 12 12 C 1.46765 * 124.35247 * 265.36045 * 7 6 5 13 13 H 1.09001 * 110.31467 * 77.97790 * 12 7 6 14 14 C 1.50694 * 110.24398 * 316.02009 * 12 7 6 15 15 O 1.21283 * 120.00468 * 336.11526 * 14 12 7 16 16 N 1.34774 * 120.00093 * 156.11598 * 14 12 7 17 17 C 1.46502 * 120.00107 * 180.02562 * 16 14 12 18 18 C 1.50701 * 109.47145 * 179.97438 * 17 16 14 19 19 H 1.08007 * 119.99969 * 359.97438 * 18 17 16 20 20 C 1.37875 * 120.00430 * 179.97438 * 18 17 16 21 21 N 1.31518 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00348 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47043 * 90.00383 * 22 20 18 24 24 H 1.48503 * 109.47209 * 210.00297 * 22 20 18 25 25 H 1.48494 * 109.47199 * 330.00363 * 22 20 18 26 26 C 1.38235 * 120.00092 * 0.24629 * 5 4 3 27 27 C 1.38233 * 119.99929 * 179.97438 * 2 1 3 28 28 H 1.08999 * 109.46789 * 90.00330 * 1 2 3 29 29 H 1.08996 * 109.46896 * 209.99879 * 1 2 3 30 30 H 1.08996 * 109.47145 * 330.00082 * 1 2 3 31 31 H 1.07996 * 120.00053 * 359.97438 * 3 2 1 32 32 H 1.08004 * 120.00041 * 179.97438 * 4 3 2 33 33 H 1.09000 * 109.47315 * 324.49607 * 6 5 4 34 34 H 1.09001 * 109.47211 * 204.49392 * 6 5 4 35 35 H 1.09003 * 110.48535 * 225.06991 * 10 8 7 36 36 H 1.08999 * 110.59801 * 102.48331 * 10 8 7 37 37 H 1.08997 * 110.97037 * 266.67970 * 11 10 8 38 38 H 1.08994 * 110.99863 * 142.93261 * 11 10 8 39 39 H 0.96998 * 120.00097 * 359.97438 * 16 14 12 40 40 H 1.08993 * 109.47524 * 59.99787 * 17 16 14 41 41 H 1.09001 * 109.46844 * 299.99303 * 17 16 14 42 42 H 0.96993 * 120.00035 * 179.97438 * 21 20 18 43 43 H 1.08003 * 120.00108 * 179.73072 * 26 5 4 44 44 H 1.08001 * 120.00318 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.2717 0.0000 0.0005 6 6 5.7787 0.0001 0.0005 7 7 6.2670 0.1326 1.3754 8 6 6.4353 -0.8971 2.2230 9 8 6.1998 -2.0577 1.9615 10 6 6.9619 -0.3975 3.5503 11 6 7.4789 1.0267 3.2414 12 6 6.6355 1.4065 2.0042 13 1 5.7415 1.9503 2.3096 14 6 7.4528 2.2408 1.0520 15 8 8.0730 1.7071 0.1568 16 7 7.4946 3.5803 1.1952 17 6 8.2887 4.3915 0.2691 18 6 8.1668 5.8461 0.6440 19 1 7.5582 6.1372 1.4875 20 6 8.8320 6.8053 -0.0897 21 7 9.5727 6.4509 -1.1171 22 14 8.6803 8.6083 0.3746 23 1 9.7501 8.9621 1.3419 24 1 8.8175 9.4464 -0.8436 25 1 7.3528 8.8497 0.9946 26 6 3.5805 -1.1971 -0.0051 27 6 2.1981 -1.1971 0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6582 2.1325 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 6.1421 0.8367 -0.5963 34 1 6.1421 -0.9351 -0.4255 35 1 7.7766 -1.0315 3.9005 36 1 6.1628 -0.3610 4.2907 37 1 8.5416 1.0120 2.9994 38 1 7.2794 1.7034 4.0722 39 1 6.9984 4.0073 1.9109 40 1 7.9221 4.2467 -0.7470 41 1 9.3342 4.0880 0.3250 42 1 10.0404 7.1257 -1.6335 43 1 4.1205 -2.1324 -0.0095 44 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427608239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:24 Heat of formation + Delta-G solvation = -75.708755 kcal Electronic energy + Delta-G solvation = -26192.949519 eV Core-core repulsion = 22494.632388 eV Total energy + Delta-G solvation = -3698.317131 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.04614 -40.31386 -39.95560 -37.32988 -36.15119 -35.26717 -34.34090 -32.65036 -31.88803 -30.34223 -29.06847 -28.38776 -25.73866 -24.87224 -23.77363 -23.20986 -21.95207 -21.60709 -20.46511 -19.15063 -18.11892 -17.91684 -17.21568 -16.99564 -16.76312 -16.34546 -16.27741 -16.13445 -15.91411 -15.44971 -14.81227 -14.69441 -14.48802 -14.43678 -14.36603 -14.10061 -14.01287 -13.66667 -13.54827 -13.31433 -12.92758 -12.87013 -12.78228 -12.72079 -12.68223 -12.21982 -12.20681 -12.03829 -11.87021 -11.47464 -11.04545 -10.87499 -10.79256 -9.91592 -9.88981 -9.78030 -9.51656 -8.27734 -6.43911 0.25105 0.44108 1.44878 1.47067 1.47571 1.55579 1.58362 1.93014 2.32339 2.51971 2.85317 3.08024 3.28094 3.44470 3.72767 3.78955 3.86308 3.98127 4.05998 4.08246 4.10122 4.13068 4.45678 4.49896 4.55408 4.64033 4.79983 4.82796 4.84374 4.91904 4.96167 5.03766 5.12235 5.13241 5.25035 5.25752 5.30081 5.44757 5.47148 5.61457 5.65004 5.67249 5.85347 6.05135 6.06065 6.66706 6.83644 7.05907 7.24555 7.42960 8.84178 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.003513 C = 0.002961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.880325 B = 7967.462431 C = 9452.879824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.126 4.126 4 C -0.108 4.108 5 C -0.123 4.123 6 C 0.170 3.830 7 N -0.593 5.593 8 C 0.508 3.492 9 O -0.572 6.572 10 C -0.138 4.138 11 C -0.111 4.111 12 C 0.118 3.882 13 H 0.133 0.867 14 C 0.492 3.508 15 O -0.590 6.590 16 N -0.695 5.695 17 C 0.269 3.731 18 C -0.552 4.552 19 H 0.088 0.912 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.982 3.018 23 H -0.271 1.271 24 H -0.288 1.288 25 H -0.253 1.253 26 C -0.105 4.105 27 C -0.128 4.128 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.118 0.882 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.117 0.883 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.144 0.856 39 H 0.412 0.588 40 H -0.013 1.013 41 H -0.012 1.012 42 H 0.267 0.733 43 H 0.114 0.886 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.579 -9.916 10.837 22.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 C -0.143 4.143 4 C -0.126 4.126 5 C -0.124 4.124 6 C 0.048 3.952 7 N -0.324 5.324 8 C 0.298 3.702 9 O -0.452 6.452 10 C -0.177 4.177 11 C -0.148 4.148 12 C 0.010 3.990 13 H 0.150 0.850 14 C 0.278 3.722 15 O -0.471 6.471 16 N -0.345 5.345 17 C 0.146 3.854 18 C -0.590 4.590 19 H 0.106 0.894 20 C -0.196 4.196 21 N -0.571 5.571 22 Si 0.805 3.195 23 H -0.197 1.197 24 H -0.214 1.214 25 H -0.177 1.177 26 C -0.124 4.124 27 C -0.146 4.146 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.096 0.904 31 H 0.160 0.840 32 H 0.136 0.864 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.135 0.865 36 H 0.157 0.843 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.248 0.752 40 H 0.005 0.995 41 H 0.006 0.994 42 H 0.076 0.924 43 H 0.132 0.868 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -16.158 -10.810 9.848 21.793 hybrid contribution 0.614 0.955 -0.578 1.274 sum -15.543 -9.855 9.270 20.607 Atomic orbital electron populations 1.20843 0.88878 1.03854 1.03215 1.20322 0.97747 0.92621 0.97908 1.21286 0.93468 0.98809 1.00778 1.21124 0.95078 0.97030 0.99411 1.20147 0.94952 0.94268 1.03025 1.20111 0.89958 1.02743 0.82384 1.48113 1.63771 1.07630 1.12930 1.21700 0.76085 0.84223 0.88222 1.90661 1.54264 1.19031 1.81224 1.22398 1.04314 0.96870 0.94135 1.22699 0.99241 0.97298 0.95609 1.21883 0.99378 0.84992 0.92705 0.84981 1.21291 0.82140 0.83180 0.85612 1.90682 1.46998 1.72955 1.36441 1.46135 1.49353 1.05744 1.33305 1.18535 0.89206 0.89874 0.87814 1.21617 1.30966 0.90746 1.15638 0.89419 1.26033 0.94171 1.04969 0.94388 1.70137 1.31232 1.36093 1.19615 0.85200 0.79458 0.77259 0.77584 1.19684 1.21413 1.17665 1.21147 0.95049 0.97182 0.99020 1.21270 0.93400 0.98825 1.01077 0.90248 0.90498 0.90398 0.83989 0.86406 0.90572 0.91156 0.86474 0.84277 0.90825 0.83829 0.75170 0.99518 0.99390 0.92380 0.86823 0.84205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.24 0.71 -0.70 16 2 C -0.09 -1.69 5.88 -19.87 -0.12 -1.80 16 3 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 4 C -0.11 -2.76 9.72 22.27 0.22 -2.55 16 5 C -0.12 -3.48 5.46 -19.87 -0.11 -3.59 16 6 C 0.17 5.48 5.46 85.63 0.47 5.95 16 7 N -0.59 -17.33 2.58 -802.62 -2.07 -19.40 16 8 C 0.51 14.56 8.02 87.90 0.71 15.27 16 9 O -0.57 -20.46 17.66 -3.03 -0.05 -20.52 16 10 C -0.14 -2.39 6.86 30.59 0.21 -2.18 16 11 C -0.11 -1.95 6.67 31.65 0.21 -1.74 16 12 C 0.12 2.91 3.70 44.69 0.17 3.07 16 13 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 14 C 0.49 17.81 6.32 87.66 0.55 18.36 16 15 O -0.59 -27.60 15.04 -3.04 -0.05 -27.65 16 16 N -0.70 -26.14 5.55 -466.80 -2.59 -28.73 16 17 C 0.27 13.83 5.43 85.63 0.46 14.29 16 18 C -0.55 -28.22 9.28 25.60 0.24 -27.98 16 19 H 0.09 3.97 7.60 -2.91 -0.02 3.94 16 20 C 0.00 0.21 5.46 84.65 0.46 0.67 16 21 N -0.93 -54.77 13.29 21.45 0.28 -54.48 16 22 Si 0.98 40.60 29.54 68.60 2.03 42.63 16 23 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 24 H -0.29 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.91 16 26 C -0.11 -2.81 9.68 22.27 0.22 -2.60 16 27 C -0.13 -2.78 9.70 22.27 0.22 -2.57 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.08 0.81 8.08 -2.39 -0.02 0.79 16 30 H 0.08 0.83 8.09 -2.39 -0.02 0.81 16 31 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 33 H 0.08 2.78 6.25 -2.39 -0.01 2.77 16 34 H 0.07 2.42 7.94 -2.39 -0.02 2.40 16 35 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.14 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.59 7.90 -2.39 -0.02 1.58 16 38 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.41 12.08 8.32 -92.71 -0.77 11.31 16 40 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 41 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 42 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 43 H 0.11 3.20 8.06 -2.91 -0.02 3.17 16 44 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -76.79 374.04 2.62 -74.17 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 0.24 Total: 24.51 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 4.83 Total: 9.46 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.37 Total: -102.61 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.10 Total: -48.16 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -76.79 2.62 -74.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.536 kcal (2) G-P(sol) polarization free energy of solvation -76.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds