Wall clock time and date at job start Tue Mar 31 2020 12:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00504 * 2 1 4 4 C 1.38235 * 120.00126 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00143 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00070 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47134 * 89.99224 * 6 5 4 8 8 C 1.34424 * 124.34411 * 89.97820 * 7 6 5 9 9 O 1.21279 * 124.94294 * 359.34446 * 8 7 6 10 10 C 1.51281 * 110.11017 * 179.61223 * 8 7 6 11 11 C 1.54624 * 104.20087 * 343.74403 * 10 8 7 12 12 C 1.46764 * 124.35282 * 269.99960 * 7 6 5 13 13 H 1.09002 * 110.24057 * 315.99681 * 12 7 6 14 14 C 1.50694 * 110.24421 * 77.90876 * 12 7 6 15 15 O 1.21286 * 120.00365 * 359.97438 * 14 12 7 16 16 N 1.34772 * 119.99957 * 180.02562 * 14 12 7 17 17 C 1.46503 * 120.00151 * 180.02562 * 16 14 12 18 18 C 1.50706 * 109.47286 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99784 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99979 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00198 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99896 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47140 * 90.00140 * 22 20 18 24 24 H 1.48504 * 109.46982 * 209.99973 * 22 20 18 25 25 H 1.48495 * 109.47270 * 330.00030 * 22 20 18 26 26 C 1.38239 * 119.99837 * 0.24113 * 5 4 3 27 27 C 1.38236 * 120.00041 * 359.50721 * 26 5 4 28 28 H 1.09007 * 109.46890 * 89.99645 * 1 2 3 29 29 H 1.08996 * 109.47359 * 209.99478 * 1 2 3 30 30 H 1.08993 * 109.46891 * 330.00459 * 1 2 3 31 31 H 1.08000 * 119.99594 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46953 * 329.99625 * 6 5 4 34 34 H 1.08996 * 109.46991 * 209.99255 * 6 5 4 35 35 H 1.09000 * 110.48574 * 102.42830 * 10 8 7 36 36 H 1.09001 * 110.48867 * 225.06693 * 10 8 7 37 37 H 1.09000 * 110.97747 * 266.68233 * 11 10 8 38 38 H 1.09000 * 111.00285 * 142.92698 * 11 10 8 39 39 H 0.96997 * 120.00261 * 359.97438 * 16 14 12 40 40 H 1.09001 * 109.47306 * 299.99795 * 17 16 14 41 41 H 1.08996 * 109.47254 * 59.99771 * 17 16 14 42 42 H 0.96996 * 119.99776 * 179.97438 * 21 20 18 43 43 H 1.08005 * 119.99644 * 179.72849 * 26 5 4 44 44 H 1.07995 * 119.99878 * 180.22480 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0002 -0.0028 7 7 6.2681 -0.0007 1.3781 8 6 6.5210 -1.1108 2.0927 9 8 6.3665 -2.2450 1.6920 10 6 7.0201 -0.7393 3.4716 11 6 7.4255 0.7471 3.3406 12 6 6.5449 1.2107 2.1591 13 1 7.0828 1.9373 1.5501 14 6 5.2585 1.8082 2.6680 15 8 4.1989 1.2785 2.4075 16 7 5.2852 2.9318 3.4117 17 6 4.0346 3.5125 3.9069 18 6 4.3387 4.7539 4.7054 19 1 5.3612 5.0782 4.8310 20 6 3.3115 5.4762 5.2746 21 7 2.0663 5.0816 5.1213 22 14 3.6884 7.0155 6.2637 23 1 3.6867 8.1957 5.3624 24 1 2.6546 7.1938 7.3148 25 1 5.0232 6.8805 6.9000 26 6 3.5805 -1.1973 -0.0072 27 6 2.1981 -1.1972 -0.0014 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1324 0.0004 32 1 4.1207 2.1323 -0.0010 33 1 6.1417 0.8899 -0.5165 34 1 6.1416 -0.8901 -0.5172 35 1 6.2254 -0.8545 4.2088 36 1 7.8833 -1.3477 3.7417 37 1 8.4841 0.8430 3.0993 38 1 7.1827 1.2997 4.2483 39 1 6.1325 3.3557 3.6197 40 1 3.3946 3.7704 3.0632 41 1 3.5243 2.7884 4.5420 42 1 1.3438 5.5896 5.5221 43 1 4.1205 -2.1326 -0.0124 44 1 1.6581 -2.1325 -0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427608240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:30 Heat of formation + Delta-G solvation = -46.758381 kcal Electronic energy + Delta-G solvation = -27027.486042 eV Core-core repulsion = 23330.424293 eV Total energy + Delta-G solvation = -3697.061748 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.33 seconds Orbital eigenvalues (eV) -40.83380 -38.83714 -38.38159 -36.00583 -34.37018 -33.95907 -32.36957 -31.50668 -30.48562 -28.69389 -27.93361 -26.68908 -24.60510 -23.16315 -22.46098 -21.96838 -20.66486 -19.93784 -19.13184 -17.70993 -16.88721 -16.15742 -15.79609 -15.61089 -15.17697 -15.02899 -14.82548 -14.67679 -14.23243 -14.03338 -13.52512 -13.46316 -13.27451 -13.10128 -12.99349 -12.64812 -12.48175 -12.32826 -12.01750 -12.00992 -11.68468 -11.54630 -11.30759 -11.18540 -11.01930 -10.97563 -10.90341 -10.55458 -10.35987 -9.76987 -9.45398 -9.44113 -8.80326 -8.54597 -8.40587 -8.08118 -7.83938 -6.21895 -4.29240 1.65058 1.89971 2.67453 3.05586 3.19753 3.22213 3.26661 3.28425 3.98085 4.24361 4.31312 4.31537 4.46344 4.79189 4.99096 5.05086 5.09089 5.14572 5.25557 5.29444 5.31851 5.38866 5.47368 5.59242 5.61367 5.70008 5.77610 5.78171 5.86117 5.88895 6.05303 6.10621 6.45623 6.47492 6.51794 6.82501 6.95405 7.01257 7.16202 7.25933 7.36675 7.45083 7.45811 7.60228 7.91397 8.24412 8.54777 8.72278 9.02485 9.37826 10.87997 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.004616 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.738631 B = 6064.737105 C = 7980.998121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.082 4.082 3 C -0.116 4.116 4 C -0.048 4.048 5 C -0.107 4.107 6 C 0.171 3.829 7 N -0.589 5.589 8 C 0.525 3.475 9 O -0.535 6.535 10 C -0.155 4.155 11 C -0.122 4.122 12 C 0.108 3.892 13 H 0.107 0.893 14 C 0.476 3.524 15 O -0.517 6.517 16 N -0.711 5.711 17 C 0.255 3.745 18 C -0.544 4.544 19 H 0.062 0.938 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.902 3.098 23 H -0.279 1.279 24 H -0.285 1.285 25 H -0.272 1.272 26 C -0.095 4.095 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.389 0.611 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.116 0.884 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.348 -7.857 -9.067 14.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.082 4.082 3 C -0.134 4.134 4 C -0.067 4.067 5 C -0.108 4.108 6 C 0.050 3.950 7 N -0.321 5.321 8 C 0.314 3.686 9 O -0.412 6.412 10 C -0.195 4.195 11 C -0.160 4.160 12 C 0.000 4.000 13 H 0.125 0.875 14 C 0.258 3.742 15 O -0.393 6.393 16 N -0.361 5.361 17 C 0.134 3.866 18 C -0.582 4.582 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.522 5.522 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.210 1.210 25 H -0.197 1.197 26 C -0.114 4.114 27 C -0.152 4.152 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.126 0.874 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.221 0.779 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 7.259 -8.791 -9.492 14.835 hybrid contribution 0.356 1.328 0.913 1.650 sum 7.615 -7.463 -8.579 13.686 Atomic orbital electron populations 1.20764 0.91821 1.02705 1.01614 1.19824 0.95623 0.93324 0.99420 1.20857 0.94247 0.97179 1.01156 1.20655 0.94018 0.96596 0.95432 1.19843 0.94922 0.93558 1.02473 1.20241 0.90576 1.03088 0.81083 1.48002 1.64758 1.06081 1.13211 1.20796 0.76393 0.84233 0.87211 1.90681 1.54339 1.20992 1.75201 1.22341 1.03627 0.97236 0.96297 1.22618 0.99680 0.95647 0.98044 1.21736 0.95334 0.88630 0.94295 0.87502 1.20710 0.90731 0.82168 0.80569 1.90799 1.31182 1.60886 1.56476 1.46445 1.12191 1.25666 1.51748 1.19048 0.80483 0.92739 0.94291 1.21212 0.93577 1.09592 1.33856 0.91938 1.24939 0.94800 0.97981 0.96195 1.69972 0.98895 1.39359 1.43940 0.86442 0.78177 0.82741 0.79713 1.20477 1.21024 1.19728 1.20904 0.94059 0.97284 0.99122 1.20828 0.94122 0.97027 1.03179 0.91710 0.91953 0.91509 0.86669 0.87419 0.89950 0.89377 0.87633 0.87952 0.89084 0.88335 0.77865 0.95688 0.95713 0.92449 0.86619 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.47 10.01 36.00 0.36 -1.11 16 2 C -0.08 -1.31 5.88 -104.62 -0.62 -1.92 16 3 C -0.12 -1.98 9.70 -39.58 -0.38 -2.37 16 4 C -0.05 -0.81 6.70 -39.58 -0.27 -1.07 16 5 C -0.11 -1.69 4.38 -104.62 -0.46 -2.15 16 6 C 0.17 2.28 6.05 -5.19 -0.03 2.24 16 7 N -0.59 -8.23 2.25 -167.56 -0.38 -8.60 16 8 C 0.53 8.00 8.02 -10.86 -0.09 7.91 16 9 O -0.54 -9.77 17.60 5.56 0.10 -9.68 16 10 C -0.15 -1.82 6.85 -26.74 -0.18 -2.01 16 11 C -0.12 -1.21 6.68 -25.10 -0.17 -1.37 16 12 C 0.11 1.36 3.49 -68.16 -0.24 1.12 16 13 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 14 C 0.48 8.31 7.09 -10.99 -0.08 8.23 16 15 O -0.52 -11.07 12.05 5.55 0.07 -11.00 16 16 N -0.71 -13.22 5.31 -61.47 -0.33 -13.55 16 17 C 0.26 6.31 5.43 -5.19 -0.03 6.28 16 18 C -0.54 -13.98 9.28 -34.44 -0.32 -14.30 16 19 H 0.06 1.49 7.60 -52.49 -0.40 1.09 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 21 N -0.88 -25.32 13.29 55.43 0.74 -24.58 16 22 Si 0.90 20.17 29.54 -169.99 -5.02 15.15 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 26 C -0.10 -1.54 9.70 -39.58 -0.38 -1.93 16 27 C -0.13 -2.10 9.70 -39.58 -0.38 -2.49 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 30 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 31 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 33 H 0.08 0.89 8.09 -51.93 -0.42 0.47 16 34 H 0.09 1.11 7.87 -51.93 -0.41 0.71 16 35 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 36 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 0.99 7.68 -51.93 -0.40 0.59 16 39 H 0.39 6.06 8.30 -40.82 -0.34 5.72 16 40 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.12 1.83 8.06 -52.48 -0.42 1.41 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 LS Contribution 369.03 15.07 5.56 5.56 Total: -1.00 -33.34 369.03 -9.21 -42.55 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.59 Total: 7.43 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -3.36 Total: -3.28 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.03 Total: -46.73 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: 0.16 Total: -20.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.34 -9.21 -42.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.208 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds