Wall clock time and date at job start Tue Mar 31 2020 12:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38236 * 120.00504 * 2 1 4 4 C 1.38235 * 120.00126 * 180.02562 * 3 2 1 5 5 C 1.38233 * 120.00143 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00070 * 179.97438 * 5 4 3 7 7 N 1.46503 * 109.47134 * 89.99224 * 6 5 4 8 8 C 1.34424 * 124.34411 * 89.97820 * 7 6 5 9 9 O 1.21279 * 124.94294 * 359.34446 * 8 7 6 10 10 C 1.51281 * 110.11017 * 179.61223 * 8 7 6 11 11 C 1.54624 * 104.20087 * 343.74403 * 10 8 7 12 12 C 1.46764 * 124.35282 * 269.99960 * 7 6 5 13 13 H 1.09002 * 110.24057 * 315.99681 * 12 7 6 14 14 C 1.50694 * 110.24421 * 77.90876 * 12 7 6 15 15 O 1.21286 * 120.00365 * 359.97438 * 14 12 7 16 16 N 1.34772 * 119.99957 * 180.02562 * 14 12 7 17 17 C 1.46503 * 120.00151 * 180.02562 * 16 14 12 18 18 C 1.50706 * 109.47286 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99784 * 0.02562 * 18 17 16 20 20 C 1.37872 * 119.99979 * 179.97438 * 18 17 16 21 21 N 1.31517 * 120.00198 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99896 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47140 * 90.00140 * 22 20 18 24 24 H 1.48504 * 109.46982 * 209.99973 * 22 20 18 25 25 H 1.48495 * 109.47270 * 330.00030 * 22 20 18 26 26 C 1.38239 * 119.99837 * 0.24113 * 5 4 3 27 27 C 1.38236 * 120.00041 * 359.50721 * 26 5 4 28 28 H 1.09007 * 109.46890 * 89.99645 * 1 2 3 29 29 H 1.08996 * 109.47359 * 209.99478 * 1 2 3 30 30 H 1.08993 * 109.46891 * 330.00459 * 1 2 3 31 31 H 1.08000 * 119.99594 * 0.02562 * 3 2 1 32 32 H 1.08001 * 119.99923 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.46953 * 329.99625 * 6 5 4 34 34 H 1.08996 * 109.46991 * 209.99255 * 6 5 4 35 35 H 1.09000 * 110.48574 * 102.42830 * 10 8 7 36 36 H 1.09001 * 110.48867 * 225.06693 * 10 8 7 37 37 H 1.09000 * 110.97747 * 266.68233 * 11 10 8 38 38 H 1.09000 * 111.00285 * 142.92698 * 11 10 8 39 39 H 0.96997 * 120.00261 * 359.97438 * 16 14 12 40 40 H 1.09001 * 109.47306 * 299.99795 * 17 16 14 41 41 H 1.08996 * 109.47254 * 59.99771 * 17 16 14 42 42 H 0.96996 * 119.99776 * 179.97438 * 21 20 18 43 43 H 1.08005 * 119.99644 * 179.72849 * 26 5 4 44 44 H 1.07995 * 119.99878 * 180.22480 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1971 0.0000 4 6 3.5806 1.1970 -0.0005 5 6 4.2717 -0.0002 -0.0016 6 6 5.7787 -0.0002 -0.0028 7 7 6.2681 -0.0007 1.3781 8 6 6.5210 -1.1108 2.0927 9 8 6.3665 -2.2450 1.6920 10 6 7.0201 -0.7393 3.4716 11 6 7.4255 0.7471 3.3406 12 6 6.5449 1.2107 2.1591 13 1 7.0828 1.9373 1.5501 14 6 5.2585 1.8082 2.6680 15 8 4.1989 1.2785 2.4075 16 7 5.2852 2.9318 3.4117 17 6 4.0346 3.5125 3.9069 18 6 4.3387 4.7539 4.7054 19 1 5.3612 5.0782 4.8310 20 6 3.3115 5.4762 5.2746 21 7 2.0663 5.0816 5.1213 22 14 3.6884 7.0155 6.2637 23 1 3.6867 8.1957 5.3624 24 1 2.6546 7.1938 7.3148 25 1 5.0232 6.8805 6.9000 26 6 3.5805 -1.1973 -0.0072 27 6 2.1981 -1.1972 -0.0014 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5137 30 1 -0.3633 0.8900 0.5137 31 1 1.6583 2.1324 0.0004 32 1 4.1207 2.1323 -0.0010 33 1 6.1417 0.8899 -0.5165 34 1 6.1416 -0.8901 -0.5172 35 1 6.2254 -0.8545 4.2088 36 1 7.8833 -1.3477 3.7417 37 1 8.4841 0.8430 3.0993 38 1 7.1827 1.2997 4.2483 39 1 6.1325 3.3557 3.6197 40 1 3.3946 3.7704 3.0632 41 1 3.5243 2.7884 4.5420 42 1 1.3438 5.5896 5.5221 43 1 4.1205 -2.1326 -0.0124 44 1 1.6581 -2.1325 -0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427608240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:29 Heat of formation + Delta-G solvation = -67.829534 kcal Electronic energy + Delta-G solvation = -27028.399755 eV Core-core repulsion = 23330.424293 eV Total energy + Delta-G solvation = -3697.975462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -41.99838 -40.08495 -39.80721 -37.26011 -36.03498 -35.20468 -34.22629 -32.59614 -31.76172 -30.17275 -29.02875 -28.29782 -25.71922 -24.83113 -23.73352 -23.26658 -21.87929 -21.37059 -20.34950 -19.18248 -18.03496 -17.85078 -17.08033 -16.91131 -16.61830 -16.50961 -16.15942 -15.93486 -15.69391 -15.44879 -14.77177 -14.61679 -14.45748 -14.39482 -14.29275 -14.02633 -13.80408 -13.68008 -13.51693 -13.38379 -12.90813 -12.80167 -12.70354 -12.65529 -12.30528 -12.20398 -12.17902 -12.11573 -11.80203 -11.44136 -10.97606 -10.80965 -10.76268 -9.85076 -9.78261 -9.56856 -9.24560 -8.25955 -6.41632 0.40830 0.59633 1.44911 1.46504 1.49658 1.57628 1.84657 1.97486 2.36305 2.67163 2.99387 3.09707 3.31266 3.52162 3.86913 3.88221 3.94618 4.01241 4.09261 4.14370 4.18886 4.28197 4.45127 4.53482 4.55961 4.65911 4.76375 4.79509 4.85796 4.94234 4.99102 5.04935 5.19573 5.21516 5.28880 5.31723 5.43432 5.54684 5.55628 5.69592 5.74259 5.77152 5.90366 6.07377 6.19899 6.71033 6.99939 7.11500 7.28556 7.61165 8.85642 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011408 B = 0.004616 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.738631 B = 6064.737105 C = 7980.998121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.094 4.094 3 C -0.141 4.141 4 C -0.058 4.058 5 C -0.110 4.110 6 C 0.167 3.833 7 N -0.587 5.587 8 C 0.513 3.487 9 O -0.573 6.573 10 C -0.153 4.153 11 C -0.108 4.108 12 C 0.115 3.885 13 H 0.150 0.850 14 C 0.473 3.527 15 O -0.560 6.560 16 N -0.703 5.703 17 C 0.277 3.723 18 C -0.550 4.550 19 H 0.086 0.914 20 C 0.004 3.996 21 N -0.932 5.932 22 Si 0.979 3.021 23 H -0.272 1.272 24 H -0.289 1.289 25 H -0.253 1.253 26 C -0.109 4.109 27 C -0.142 4.142 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.101 0.899 39 H 0.408 0.592 40 H -0.016 1.016 41 H -0.020 1.020 42 H 0.266 0.734 43 H 0.116 0.884 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.386 -6.979 -8.725 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.094 4.094 3 C -0.159 4.159 4 C -0.076 4.076 5 C -0.111 4.111 6 C 0.046 3.954 7 N -0.318 5.318 8 C 0.303 3.697 9 O -0.453 6.453 10 C -0.193 4.193 11 C -0.146 4.146 12 C 0.008 3.992 13 H 0.167 0.833 14 C 0.258 3.742 15 O -0.439 6.439 16 N -0.355 5.355 17 C 0.154 3.846 18 C -0.588 4.588 19 H 0.104 0.896 20 C -0.195 4.195 21 N -0.571 5.571 22 Si 0.802 3.198 23 H -0.198 1.198 24 H -0.215 1.215 25 H -0.176 1.176 26 C -0.127 4.127 27 C -0.160 4.160 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.244 0.756 40 H 0.002 0.998 41 H -0.002 1.002 42 H 0.075 0.925 43 H 0.134 0.866 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 10.362 -7.900 -9.158 15.926 hybrid contribution -0.646 0.985 0.765 1.405 sum 9.715 -6.915 -8.393 14.582 Atomic orbital electron populations 1.20790 0.89905 1.02811 1.03083 1.20156 0.97243 0.92995 0.98993 1.21052 0.94915 0.97624 1.02350 1.20718 0.94010 0.96990 0.95921 1.20104 0.96571 0.92891 1.01541 1.20408 0.88812 1.04856 0.81354 1.48134 1.63934 1.06361 1.13363 1.21459 0.75933 0.83907 0.88433 1.90654 1.55957 1.22504 1.76201 1.22394 1.04085 0.99291 0.93553 1.22733 1.01490 0.93580 0.96761 1.21896 0.92667 0.88748 0.95908 0.83261 1.21713 0.92301 0.81078 0.79114 1.90798 1.33619 1.61801 1.57655 1.46089 1.10880 1.26329 1.52158 1.18372 0.82310 0.91933 0.92027 1.21646 0.94646 1.09386 1.33117 0.89584 1.26003 0.94464 1.01624 0.97416 1.70145 1.00256 1.41201 1.45509 0.85246 0.78539 0.78169 0.77820 1.19796 1.21519 1.17638 1.21093 0.94526 0.97589 0.99540 1.21125 0.94316 0.97813 1.02775 0.89495 0.90876 0.92295 0.87226 0.87564 0.87000 0.88825 0.89253 0.85175 0.84502 0.88097 0.75597 0.99785 1.00217 0.92538 0.86570 0.85015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.89 10.01 71.24 0.71 -2.17 16 2 C -0.09 -3.09 5.88 -19.86 -0.12 -3.21 16 3 C -0.14 -5.08 9.70 22.27 0.22 -4.87 16 4 C -0.06 -2.00 6.70 22.27 0.15 -1.85 16 5 C -0.11 -3.51 4.38 -19.87 -0.09 -3.60 16 6 C 0.17 4.20 6.05 85.63 0.52 4.72 16 7 N -0.59 -15.26 2.25 -802.62 -1.81 -17.07 16 8 C 0.51 14.88 8.02 87.90 0.71 15.59 16 9 O -0.57 -20.73 17.60 -3.02 -0.05 -20.79 16 10 C -0.15 -3.22 6.85 30.59 0.21 -3.01 16 11 C -0.11 -1.68 6.68 31.65 0.21 -1.46 16 12 C 0.12 2.53 3.49 44.70 0.16 2.69 16 13 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 14 C 0.47 16.17 7.09 87.66 0.62 16.79 16 15 O -0.56 -24.63 12.05 -3.05 -0.04 -24.66 16 16 N -0.70 -25.66 5.31 -466.78 -2.48 -28.14 16 17 C 0.28 14.15 5.43 85.63 0.46 14.61 16 18 C -0.55 -28.13 9.28 25.60 0.24 -27.89 16 19 H 0.09 3.90 7.60 -2.91 -0.02 3.88 16 20 C 0.00 0.23 5.46 84.65 0.46 0.70 16 21 N -0.93 -55.03 13.29 21.45 0.28 -54.74 16 22 Si 0.98 40.83 29.54 68.60 2.03 42.86 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 24 H -0.29 -12.20 7.11 99.48 0.71 -11.49 16 25 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 26 C -0.11 -3.60 9.70 22.27 0.22 -3.39 16 27 C -0.14 -4.57 9.70 22.27 0.22 -4.35 16 28 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 29 H 0.07 1.75 8.09 -2.39 -0.02 1.73 16 30 H 0.06 1.63 8.08 -2.39 -0.02 1.61 16 31 H 0.11 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.11 3.58 8.06 -2.91 -0.02 3.55 16 33 H 0.11 2.12 8.09 -2.39 -0.02 2.10 16 34 H 0.09 2.26 7.87 -2.39 -0.02 2.24 16 35 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 36 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.14 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.10 1.61 7.68 -2.39 -0.02 1.59 16 39 H 0.41 11.67 8.30 -92.71 -0.77 10.90 16 40 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 41 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 43 H 0.12 3.76 8.06 -2.91 -0.02 3.74 16 44 H 0.13 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -77.31 369.03 3.06 -74.25 By element: Atomic # 1 Polarization: 28.77 SS G_CDS: 0.23 Total: 29.00 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: 4.89 Total: -0.71 kcal Atomic # 7 Polarization: -95.95 SS G_CDS: -4.00 Total: -99.95 kcal Atomic # 8 Polarization: -45.36 SS G_CDS: -0.09 Total: -45.45 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 2.03 Total: 42.86 kcal Total: -77.31 3.06 -74.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427608240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.418 kcal (2) G-P(sol) polarization free energy of solvation -77.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds