Wall clock time and date at job start Tue Mar 31 2020 11:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.51185 * 113.03064 * 2 1 4 4 O 1.21227 * 125.28629 * 302.63253 * 3 2 1 5 5 N 1.33793 * 109.43313 * 122.65484 * 3 2 1 6 6 C 1.46506 * 122.73189 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46992 * 90.00190 * 6 5 3 8 8 H 1.09009 * 109.46910 * 54.99662 * 7 6 5 9 9 C 1.47200 * 109.47110 * 295.00062 * 7 6 5 10 10 N 4.58425 * 79.05919 * 11.44975 * 2 1 3 11 11 C 1.52992 * 109.47398 * 174.99866 * 7 6 5 12 12 C 1.50692 * 109.47474 * 185.00158 * 11 7 6 13 13 H 1.08001 * 119.99992 * 359.97438 * 12 11 7 14 14 C 1.37878 * 120.00146 * 179.97438 * 12 11 7 15 15 N 1.31517 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46918 * 60.00517 * 16 14 12 18 18 H 1.48501 * 109.46643 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47324 * 300.00009 * 16 14 12 20 20 C 1.33783 * 114.53492 * 0.29144 * 5 3 2 21 21 O 1.21230 * 125.28706 * 179.75095 * 20 5 3 22 22 C 1.51194 * 109.42533 * 359.59117 * 20 5 3 23 23 H 1.09002 * 113.21048 * 237.52546 * 22 20 5 24 24 C 1.55835 * 108.87096 * 110.95379 * 22 20 5 25 25 H 1.08998 * 115.86218 * 89.26368 * 24 22 20 26 26 C 1.55914 * 104.57138 * 320.43533 * 24 22 20 27 27 C 1.54582 * 104.64424 * 289.52998 * 26 24 22 28 28 C 1.54158 * 104.79791 * 0.28684 * 27 26 24 29 29 H 1.09000 * 115.71429 * 199.45249 * 28 27 26 30 30 C 1.56912 * 100.74410 * 216.28245 * 24 22 20 31 31 H 1.09004 * 109.47123 * 61.60847 * 1 2 3 32 32 H 1.09000 * 109.47201 * 181.60955 * 1 2 3 33 33 H 1.09000 * 109.46972 * 301.60697 * 1 2 3 34 34 H 1.09000 * 109.46803 * 209.99624 * 6 5 3 35 35 H 1.09000 * 109.47214 * 330.00417 * 6 5 3 36 36 H 1.09004 * 109.47359 * 305.00171 * 11 7 6 37 37 H 1.08999 * 109.47383 * 64.99368 * 11 7 6 38 38 H 0.96995 * 120.00286 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.40421 * 48.32510 * 26 24 22 40 40 H 1.09002 * 110.39799 * 170.62765 * 26 24 22 41 41 H 1.09009 * 110.40098 * 118.82131 * 27 26 24 42 42 H 1.08994 * 110.40483 * 241.12886 * 27 26 24 43 43 H 1.08990 * 112.02408 * 170.48793 * 30 24 22 44 44 H 1.09002 * 112.02546 * 297.00877 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1215 1.3913 0.0000 4 8 1.9044 2.2446 -0.8333 5 7 2.9222 1.5347 1.0623 6 6 3.6469 2.7758 1.3463 7 6 2.7813 3.6824 2.2237 8 1 2.4798 3.1402 3.1201 9 6 1.5838 4.0937 1.4731 10 7 0.6600 4.4114 0.8935 11 6 3.5835 4.9223 2.6234 12 6 2.7760 5.7544 3.5859 13 1 1.7891 5.4314 3.8825 14 6 3.2972 6.9281 4.0878 15 7 4.4988 7.3217 3.7262 16 14 2.2958 7.9600 5.2803 17 1 1.9878 7.1576 6.4912 18 1 3.0746 9.1634 5.6683 19 1 1.0290 8.3796 4.6290 20 6 3.0115 0.4504 1.8409 21 8 3.6824 0.3641 2.8470 22 6 2.1426 -0.6491 1.2735 23 1 1.3909 -1.0085 1.9762 24 6 3.0594 -1.7854 0.7286 25 1 3.3292 -2.5626 1.4436 26 6 4.2502 -1.0389 0.0536 27 6 3.6406 -0.3949 -1.2125 28 6 2.1535 -0.8000 -1.1832 29 1 1.6256 -0.7307 -2.1343 30 6 2.2456 -2.2375 -0.5345 31 1 -0.3633 0.4887 -0.9041 32 1 -0.3633 -1.0273 0.0289 33 1 -0.3633 0.5386 0.8752 34 1 4.5749 2.5432 1.8686 35 1 3.8746 3.2860 0.4104 36 1 4.5139 4.6148 3.1010 37 1 3.8091 5.5113 1.7344 38 1 4.8653 8.1476 4.0790 39 1 4.6433 -0.2704 0.7192 40 1 5.0361 -1.7440 -0.2174 41 1 3.7343 0.6903 -1.1696 42 1 4.1267 -0.7824 -2.1077 43 1 2.8110 -2.9290 -1.1590 44 1 1.2681 -2.6399 -0.2685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453037119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:38 Heat of formation + Delta-G solvation = -32.550216 kcal Electronic energy + Delta-G solvation = -27825.194142 eV Core-core repulsion = 24128.748506 eV Total energy + Delta-G solvation = -3696.445636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -43.28341 -39.09284 -38.60919 -36.64375 -35.37689 -33.88728 -33.02094 -31.82317 -30.40090 -28.76746 -27.63850 -26.24476 -24.50077 -23.84477 -22.00931 -21.83028 -20.57645 -19.64708 -19.27019 -17.41975 -17.26295 -16.56577 -16.26562 -16.22463 -15.82587 -15.03933 -14.69328 -14.47183 -14.42513 -13.92967 -13.58850 -13.49060 -13.15328 -12.94502 -12.64923 -12.53497 -12.47987 -12.31537 -12.10316 -11.75346 -11.69254 -11.54895 -11.46939 -11.38933 -11.13497 -11.08529 -11.05408 -10.88507 -10.68065 -10.51444 -10.38624 -10.24227 -9.86483 -9.80521 -9.49186 -9.19107 -8.46386 -6.10702 -4.14273 1.56198 2.53094 2.73498 3.31248 3.35209 3.38925 3.60607 3.61734 3.66413 3.82780 4.05346 4.12458 4.33552 4.39996 4.48567 4.61964 4.70163 4.77337 4.89820 4.90234 5.00604 5.12722 5.27241 5.32881 5.34502 5.36153 5.38674 5.48183 5.49139 5.51531 5.63432 5.63543 5.70795 5.72160 5.78951 5.84908 5.87521 5.95463 6.22916 6.40483 6.89051 7.37229 7.37479 7.46588 7.81941 7.84926 8.19561 8.43190 8.88807 9.51055 11.00202 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003781 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.922190 B = 7403.770550 C = 7752.105957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.096 4.096 3 C 0.534 3.466 4 O -0.467 6.467 5 N -0.575 5.575 6 C 0.103 3.897 7 C -0.005 4.005 8 H 0.104 0.896 9 C 0.230 3.770 10 N -0.453 5.453 11 C 0.035 3.965 12 C -0.527 4.527 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.891 5.891 16 Si 0.893 3.107 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.277 1.277 20 C 0.537 3.463 21 O -0.477 6.477 22 C -0.125 4.125 23 H 0.130 0.870 24 C -0.080 4.080 25 H 0.115 0.885 26 C -0.136 4.136 27 C -0.136 4.136 28 C -0.077 4.077 29 H 0.112 0.888 30 C -0.116 4.116 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.042 0.958 37 H 0.029 0.971 38 H 0.264 0.736 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.080 0.920 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.759 -23.211 -8.707 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.100 4.100 3 C 0.323 3.677 4 O -0.337 6.337 5 N -0.318 5.318 6 C -0.018 4.018 7 C -0.027 4.027 8 H 0.122 0.878 9 C -0.087 4.087 10 N -0.129 5.129 11 C -0.003 4.003 12 C -0.566 4.566 13 H 0.074 0.926 14 C -0.138 4.138 15 N -0.529 5.529 16 Si 0.720 3.280 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.202 1.202 20 C 0.326 3.674 21 O -0.348 6.348 22 C -0.146 4.146 23 H 0.148 0.852 24 C -0.099 4.099 25 H 0.133 0.867 26 C -0.174 4.174 27 C -0.174 4.174 28 C -0.095 4.095 29 H 0.130 0.870 30 C -0.154 4.154 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.060 0.940 37 H 0.047 0.953 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.739 -22.099 -9.461 24.195 hybrid contribution -0.052 0.893 1.042 1.373 sum -2.790 -21.206 -8.419 22.986 Atomic orbital electron populations 1.21521 0.89952 1.03018 1.03637 1.22618 0.98275 0.92353 0.96712 1.20526 0.77573 0.89597 0.80023 1.90810 1.58407 1.46371 1.38066 1.46946 1.43649 1.15437 1.25740 1.22074 0.95673 0.82077 1.02004 1.19553 0.88226 0.99808 0.95118 0.87775 1.28957 0.94186 0.92568 0.93007 1.80995 1.12194 1.09638 1.10062 1.19148 0.95016 0.88656 0.97521 1.21034 1.02083 1.06647 1.26792 0.92598 1.24936 0.94960 0.97414 0.96504 1.69921 1.15752 1.23194 1.44013 0.86631 0.80203 0.79716 0.81416 1.19999 1.21097 1.20225 1.20463 0.81240 0.83468 0.82231 1.90791 1.40092 1.81506 1.22436 1.23370 0.98625 0.95454 0.97160 0.85173 1.23463 0.94253 0.95384 0.96787 0.86658 1.22893 0.97763 0.99869 0.96857 1.22540 0.95110 1.00960 0.98743 1.23358 0.95376 0.94414 0.96387 0.86965 1.23792 1.00311 0.95705 0.95569 0.90844 0.90664 0.91755 0.86964 0.88366 0.93964 0.95270 0.92656 0.91269 0.90426 0.91403 0.90359 0.90095 0.90181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.07 37.16 0.34 -0.79 16 2 C -0.10 -0.98 0.84 -152.57 -0.13 -1.11 16 3 C 0.53 7.67 3.57 -11.19 -0.04 7.63 16 4 O -0.47 -8.31 16.32 5.60 0.09 -8.22 16 5 N -0.58 -8.30 2.17 -115.48 -0.25 -8.55 16 6 C 0.10 1.66 5.01 -4.04 -0.02 1.64 16 7 C 0.00 -0.09 2.42 -93.41 -0.23 -0.32 16 8 H 0.10 1.99 8.14 -51.92 -0.42 1.57 16 9 C 0.23 5.03 12.13 -20.76 -0.25 4.78 16 10 N -0.45 -10.60 18.47 42.15 0.78 -9.82 16 11 C 0.04 0.84 4.42 -27.89 -0.12 0.71 16 12 C -0.53 -14.36 8.60 -34.44 -0.30 -14.65 16 13 H 0.06 1.52 7.59 -52.49 -0.40 1.12 16 14 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 15 N -0.89 -25.75 13.29 55.43 0.74 -25.01 16 16 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 C 0.54 7.14 4.78 -11.19 -0.05 7.09 16 21 O -0.48 -7.56 17.30 5.60 0.10 -7.46 16 22 C -0.12 -1.19 3.60 -88.68 -0.32 -1.51 16 23 H 0.13 1.01 7.99 -51.93 -0.42 0.60 16 24 C -0.08 -0.59 4.96 -85.43 -0.42 -1.02 16 25 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 26 C -0.14 -1.19 5.85 -24.34 -0.14 -1.33 16 27 C -0.14 -1.23 5.81 -25.29 -0.15 -1.38 16 28 C -0.08 -0.62 4.44 -85.77 -0.38 -1.00 16 29 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 30 C -0.12 -0.67 6.47 -21.88 -0.14 -0.81 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.46 7.81 -51.93 -0.41 0.06 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 1.65 7.81 -51.93 -0.41 1.25 16 35 H 0.10 1.58 7.82 -51.93 -0.41 1.17 16 36 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.07 0.76 5.72 -51.93 -0.30 0.47 16 40 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.80 5.74 -51.92 -0.30 0.50 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.37 7.81 -51.93 -0.41 -0.03 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -33.25 353.86 -7.08 -40.34 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -6.39 Total: -2.84 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.45 Total: -0.36 kcal Atomic # 7 Polarization: -44.65 SS G_CDS: 1.26 Total: -43.38 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: 0.19 Total: -15.68 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.25 -7.08 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453037119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.786 kcal (2) G-P(sol) polarization free energy of solvation -33.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds