Wall clock time and date at job start Tue Mar 31 2020 11:29:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.51185 * 113.03064 * 2 1 4 4 O 1.21227 * 125.28629 * 302.63253 * 3 2 1 5 5 N 1.33793 * 109.43313 * 122.65484 * 3 2 1 6 6 C 1.46506 * 122.73189 * 180.02562 * 5 3 2 7 7 C 1.53000 * 109.46992 * 90.00190 * 6 5 3 8 8 H 1.09009 * 109.46910 * 54.99662 * 7 6 5 9 9 C 1.47200 * 109.47110 * 295.00062 * 7 6 5 10 10 N 4.58425 * 79.05919 * 11.44975 * 2 1 3 11 11 C 1.52992 * 109.47398 * 174.99866 * 7 6 5 12 12 C 1.50692 * 109.47474 * 185.00158 * 11 7 6 13 13 H 1.08001 * 119.99992 * 359.97438 * 12 11 7 14 14 C 1.37878 * 120.00146 * 179.97438 * 12 11 7 15 15 N 1.31517 * 120.00318 * 0.02562 * 14 12 11 16 16 Si 1.86807 * 119.99918 * 179.97438 * 14 12 11 17 17 H 1.48492 * 109.46918 * 60.00517 * 16 14 12 18 18 H 1.48501 * 109.46643 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47324 * 300.00009 * 16 14 12 20 20 C 1.33783 * 114.53492 * 0.29144 * 5 3 2 21 21 O 1.21230 * 125.28706 * 179.75095 * 20 5 3 22 22 C 1.51194 * 109.42533 * 359.59117 * 20 5 3 23 23 H 1.09002 * 113.21048 * 237.52546 * 22 20 5 24 24 C 1.55835 * 108.87096 * 110.95379 * 22 20 5 25 25 H 1.08998 * 115.86218 * 89.26368 * 24 22 20 26 26 C 1.55914 * 104.57138 * 320.43533 * 24 22 20 27 27 C 1.54582 * 104.64424 * 289.52998 * 26 24 22 28 28 C 1.54158 * 104.79791 * 0.28684 * 27 26 24 29 29 H 1.09000 * 115.71429 * 199.45249 * 28 27 26 30 30 C 1.56912 * 100.74410 * 216.28245 * 24 22 20 31 31 H 1.09004 * 109.47123 * 61.60847 * 1 2 3 32 32 H 1.09000 * 109.47201 * 181.60955 * 1 2 3 33 33 H 1.09000 * 109.46972 * 301.60697 * 1 2 3 34 34 H 1.09000 * 109.46803 * 209.99624 * 6 5 3 35 35 H 1.09000 * 109.47214 * 330.00417 * 6 5 3 36 36 H 1.09004 * 109.47359 * 305.00171 * 11 7 6 37 37 H 1.08999 * 109.47383 * 64.99368 * 11 7 6 38 38 H 0.96995 * 120.00286 * 179.97438 * 15 14 12 39 39 H 1.08998 * 110.40421 * 48.32510 * 26 24 22 40 40 H 1.09002 * 110.39799 * 170.62765 * 26 24 22 41 41 H 1.09009 * 110.40098 * 118.82131 * 27 26 24 42 42 H 1.08994 * 110.40483 * 241.12886 * 27 26 24 43 43 H 1.08990 * 112.02408 * 170.48793 * 30 24 22 44 44 H 1.09002 * 112.02546 * 297.00877 * 30 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1215 1.3913 0.0000 4 8 1.9044 2.2446 -0.8333 5 7 2.9222 1.5347 1.0623 6 6 3.6469 2.7758 1.3463 7 6 2.7813 3.6824 2.2237 8 1 2.4798 3.1402 3.1201 9 6 1.5838 4.0937 1.4731 10 7 0.6600 4.4114 0.8935 11 6 3.5835 4.9223 2.6234 12 6 2.7760 5.7544 3.5859 13 1 1.7891 5.4314 3.8825 14 6 3.2972 6.9281 4.0878 15 7 4.4988 7.3217 3.7262 16 14 2.2958 7.9600 5.2803 17 1 1.9878 7.1576 6.4912 18 1 3.0746 9.1634 5.6683 19 1 1.0290 8.3796 4.6290 20 6 3.0115 0.4504 1.8409 21 8 3.6824 0.3641 2.8470 22 6 2.1426 -0.6491 1.2735 23 1 1.3909 -1.0085 1.9762 24 6 3.0594 -1.7854 0.7286 25 1 3.3292 -2.5626 1.4436 26 6 4.2502 -1.0389 0.0536 27 6 3.6406 -0.3949 -1.2125 28 6 2.1535 -0.8000 -1.1832 29 1 1.6256 -0.7307 -2.1343 30 6 2.2456 -2.2375 -0.5345 31 1 -0.3633 0.4887 -0.9041 32 1 -0.3633 -1.0273 0.0289 33 1 -0.3633 0.5386 0.8752 34 1 4.5749 2.5432 1.8686 35 1 3.8746 3.2860 0.4104 36 1 4.5139 4.6148 3.1010 37 1 3.8091 5.5113 1.7344 38 1 4.8653 8.1476 4.0790 39 1 4.6433 -0.2704 0.7192 40 1 5.0361 -1.7440 -0.2174 41 1 3.7343 0.6903 -1.1696 42 1 4.1267 -0.7824 -2.1077 43 1 2.8110 -2.9290 -1.1590 44 1 1.2681 -2.6399 -0.2685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453037119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:37 Heat of formation + Delta-G solvation = -52.205457 kcal Electronic energy + Delta-G solvation = -27826.046457 eV Core-core repulsion = 24128.748506 eV Total energy + Delta-G solvation = -3697.297951 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.20745 -40.05515 -39.77021 -38.26067 -36.71318 -35.69079 -34.30869 -33.28743 -31.19553 -29.84973 -28.62876 -27.45597 -25.67870 -25.18961 -23.80505 -22.77384 -21.30096 -20.45608 -20.22925 -18.84929 -18.55865 -18.12615 -17.77395 -17.05827 -16.78735 -16.63344 -16.09703 -15.67425 -15.46005 -15.13165 -14.85383 -14.77863 -14.42348 -14.23679 -14.01274 -13.71598 -13.53815 -13.35863 -13.21188 -13.20143 -13.09106 -12.99151 -12.74293 -12.54820 -12.31227 -12.23707 -12.18280 -11.94385 -11.83609 -11.75500 -11.69600 -11.46692 -11.18220 -11.07178 -10.88569 -10.77246 -10.61613 -8.25668 -6.35446 0.48983 1.36963 1.38904 1.42288 1.47195 1.64526 1.82427 1.88696 2.36979 2.82964 3.00631 3.01152 3.10738 3.28772 3.40060 3.68478 3.75569 3.83782 3.90560 3.93846 4.07962 4.18667 4.26887 4.29195 4.34980 4.40272 4.47483 4.58876 4.65981 4.72764 4.80975 4.84047 4.90797 4.98703 5.10198 5.12156 5.16814 5.26203 5.30755 5.32570 5.33582 5.44882 5.68631 5.78939 6.08793 6.31302 6.62024 6.72503 6.76353 7.33171 8.85300 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023887 B = 0.003781 C = 0.003611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.922190 B = 7403.770550 C = 7752.105957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.092 4.092 3 C 0.528 3.472 4 O -0.511 6.511 5 N -0.580 5.580 6 C 0.109 3.891 7 C 0.007 3.993 8 H 0.113 0.887 9 C 0.239 3.761 10 N -0.480 5.480 11 C 0.043 3.957 12 C -0.545 4.545 13 H 0.052 0.948 14 C 0.014 3.986 15 N -0.921 5.921 16 Si 0.952 3.048 17 H -0.262 1.262 18 H -0.278 1.278 19 H -0.280 1.280 20 C 0.534 3.466 21 O -0.506 6.506 22 C -0.118 4.118 23 H 0.157 0.843 24 C -0.073 4.073 25 H 0.137 0.863 26 C -0.140 4.140 27 C -0.139 4.139 28 C -0.077 4.077 29 H 0.121 0.879 30 C -0.097 4.097 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.048 0.952 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.039 0.961 37 H 0.006 0.994 38 H 0.266 0.734 39 H 0.039 0.961 40 H 0.095 0.905 41 H 0.032 0.968 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.804 -26.479 -8.504 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.095 4.095 3 C 0.319 3.681 4 O -0.385 6.385 5 N -0.322 5.322 6 C -0.013 4.013 7 C -0.015 4.015 8 H 0.130 0.870 9 C -0.078 4.078 10 N -0.156 5.156 11 C 0.004 3.996 12 C -0.583 4.583 13 H 0.070 0.930 14 C -0.185 4.185 15 N -0.560 5.560 16 Si 0.777 3.223 17 H -0.187 1.187 18 H -0.203 1.203 19 H -0.206 1.206 20 C 0.326 3.674 21 O -0.380 6.380 22 C -0.138 4.138 23 H 0.175 0.825 24 C -0.091 4.091 25 H 0.155 0.845 26 C -0.177 4.177 27 C -0.177 4.177 28 C -0.095 4.095 29 H 0.139 0.861 30 C -0.134 4.134 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.067 0.933 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.024 0.976 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.114 0.886 41 H 0.050 0.950 42 H 0.111 0.889 43 H 0.120 0.880 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -3.790 -25.400 -9.254 27.297 hybrid contribution 0.338 1.953 0.942 2.194 sum -3.452 -23.447 -8.312 25.115 Atomic orbital electron populations 1.21576 0.88834 1.05215 1.02327 1.22793 0.98956 0.89358 0.98385 1.21425 0.76743 0.91023 0.78900 1.90775 1.59920 1.48251 1.39504 1.47089 1.43650 1.15053 1.26385 1.21814 0.95568 0.82828 1.01099 1.19441 0.87357 0.98777 0.95917 0.86962 1.29335 0.94159 0.91876 0.92457 1.80975 1.13215 1.10378 1.11078 1.18943 0.95115 0.89707 0.95853 1.21410 1.02226 1.07335 1.27292 0.92951 1.25729 0.95974 0.98655 0.98189 1.70019 1.17093 1.23751 1.45157 0.85691 0.78481 0.78445 0.79649 1.18696 1.20290 1.20589 1.21210 0.80976 0.83806 0.81442 1.90770 1.41509 1.81968 1.23739 1.23574 0.98761 0.94609 0.96887 0.82548 1.23609 0.93069 0.94683 0.97753 0.84504 1.22923 0.99014 0.99581 0.96185 1.22559 0.96530 0.98798 0.99766 1.23469 0.94093 0.95846 0.96112 0.86080 1.23783 1.01535 0.93988 0.94059 0.92066 0.86584 0.93275 0.85820 0.89026 0.94247 0.97607 0.92466 0.94269 0.88642 0.94979 0.88851 0.88042 0.87751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.07 71.98 0.65 -1.28 16 2 C -0.09 -1.69 0.84 -50.93 -0.04 -1.74 16 3 C 0.53 15.37 3.57 87.96 0.31 15.69 16 4 O -0.51 -19.04 16.32 -2.87 -0.05 -19.08 16 5 N -0.58 -17.08 2.17 -757.21 -1.64 -18.72 16 6 C 0.11 3.68 5.01 86.38 0.43 4.11 16 7 C 0.01 0.30 2.42 -12.60 -0.03 0.27 16 8 H 0.11 4.38 8.14 -2.38 -0.02 4.36 16 9 C 0.24 10.75 12.13 89.44 1.09 11.84 16 10 N -0.48 -23.09 18.47 20.00 0.37 -22.72 16 11 C 0.04 2.10 4.42 29.84 0.13 2.23 16 12 C -0.54 -30.19 8.60 25.60 0.22 -29.97 16 13 H 0.05 2.88 7.59 -2.91 -0.02 2.86 16 14 C 0.01 0.79 5.46 84.65 0.46 1.25 16 15 N -0.92 -54.12 13.29 21.45 0.28 -53.83 16 16 Si 0.95 44.51 29.54 68.60 2.03 46.54 16 17 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 20 C 0.53 13.87 4.78 87.97 0.42 14.29 16 21 O -0.51 -15.90 17.30 -2.87 -0.05 -15.95 16 22 C -0.12 -1.91 3.60 -9.54 -0.03 -1.95 16 23 H 0.16 1.79 7.99 -2.39 -0.02 1.77 16 24 C -0.07 -0.79 4.96 -7.43 -0.04 -0.83 16 25 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 26 C -0.14 -2.16 5.85 32.14 0.19 -1.97 16 27 C -0.14 -2.34 5.81 31.53 0.18 -2.16 16 28 C -0.08 -1.02 4.44 -7.65 -0.03 -1.05 16 29 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 30 C -0.10 -0.61 6.47 33.74 0.22 -0.39 16 31 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.12 0.88 7.81 -2.39 -0.02 0.86 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.12 3.82 7.81 -2.39 -0.02 3.80 16 35 H 0.09 3.17 7.82 -2.39 -0.02 3.15 16 36 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 39 H 0.04 0.85 5.72 -2.39 -0.01 0.84 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.03 0.77 5.74 -2.38 -0.01 0.76 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 44 H 0.10 0.26 7.81 -2.39 -0.02 0.25 16 Total: -1.00 -74.79 353.86 6.09 -68.71 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 1.01 Total: 6.71 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 4.13 Total: 8.35 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -0.99 Total: -95.27 kcal Atomic # 8 Polarization: -34.94 SS G_CDS: -0.10 Total: -35.03 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -74.79 6.09 -68.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453037119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.503 kcal (2) G-P(sol) polarization free energy of solvation -74.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds