Wall clock time and date at job start Tue Mar 31 2020 11:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00207 * 2 1 4 4 C 1.52996 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47111 * 64.99616 * 4 3 2 6 6 C 1.37095 * 120.00170 * 264.55064 * 5 4 3 7 7 H 1.07996 * 119.99862 * 145.65400 * 6 5 4 8 8 C 1.38945 * 120.00139 * 325.65066 * 6 5 4 9 9 N 1.31407 * 120.00357 * 338.16421 * 8 6 5 10 10 Si 1.86804 * 120.00087 * 158.15813 * 8 6 5 11 11 H 1.48507 * 109.46611 * 60.00144 * 10 8 6 12 12 H 1.48500 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47218 * 300.00600 * 10 8 6 14 14 C 1.34776 * 119.99460 * 84.55718 * 5 4 3 15 15 O 1.21286 * 120.00399 * 359.97438 * 14 5 4 16 16 C 1.50706 * 119.99850 * 180.02562 * 14 5 4 17 17 C 1.50694 * 109.47122 * 179.97438 * 16 14 5 18 18 C 1.34238 * 126.50357 * 90.02019 * 17 16 14 19 19 C 1.50702 * 125.03674 * 359.97438 * 18 17 16 20 20 N 1.36832 * 109.93221 * 179.71203 * 18 17 16 21 21 H 0.96996 * 125.06777 * 180.24259 * 20 18 17 22 22 C 1.37693 * 109.87213 * 0.26872 * 20 18 17 23 23 C 1.39128 * 133.50803 * 179.97438 * 22 20 18 24 24 C 1.37742 * 119.77670 * 179.97438 * 23 22 20 25 25 C 1.38833 * 120.67206 * 0.04506 * 24 23 22 26 26 C 1.36629 * 120.52409 * 359.95860 * 25 24 23 27 27 C 1.39634 * 119.76365 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47260 * 60.00076 * 1 2 3 29 29 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46997 * 299.99719 * 1 2 3 31 31 H 1.09002 * 109.47029 * 59.99751 * 3 2 1 32 32 H 1.08996 * 109.46786 * 300.00192 * 3 2 1 33 33 H 1.09007 * 109.47089 * 304.99806 * 4 3 2 34 34 H 1.09001 * 109.47246 * 185.00033 * 4 3 2 35 35 H 0.97001 * 120.00436 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47541 * 59.99044 * 16 14 5 37 37 H 1.09009 * 109.46604 * 299.99091 * 16 14 5 38 38 H 1.08995 * 109.47000 * 269.72049 * 19 18 17 39 39 H 1.09002 * 109.47233 * 149.71844 * 19 18 17 40 40 H 1.09002 * 109.46817 * 29.71758 * 19 18 17 41 41 H 1.07999 * 120.11012 * 359.97388 * 23 22 20 42 42 H 1.08005 * 119.66714 * 180.02562 * 24 23 22 43 43 H 1.07993 * 119.73902 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.12143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.2045 -0.7864 -1.3051 7 1 3.9849 -1.3366 -2.2081 8 6 4.7189 -1.4474 -0.1966 9 7 5.3776 -0.7765 0.7215 10 14 4.4742 -3.2901 -0.0111 11 1 5.0930 -3.9901 -1.1654 12 1 5.1133 -3.7501 1.2480 13 1 3.0215 -3.5946 0.0317 14 6 4.1557 1.3216 -2.3529 15 8 3.9530 2.5165 -2.3066 16 6 4.6080 0.6835 -3.6411 17 6 4.7312 1.7398 -4.7088 18 6 5.8257 2.4627 -4.9944 19 6 7.1500 2.3446 -4.2848 20 7 5.5626 3.3185 -6.0291 21 1 6.2003 3.9394 -6.4147 22 6 4.2574 3.1674 -6.4411 23 6 3.4888 3.7738 -7.4296 24 6 2.1755 3.3961 -7.6029 25 6 1.6087 2.4157 -6.7998 26 6 2.3453 1.8073 -5.8230 27 6 3.6786 2.1745 -5.6301 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0889 35 1 5.7364 -1.2379 1.4956 36 1 3.8782 -0.0638 -3.9523 37 1 5.5757 0.2052 -3.4894 38 1 7.1738 3.0362 -3.4427 39 1 7.9561 2.5873 -4.9772 40 1 7.2778 1.3250 -3.9213 41 1 3.9204 4.5380 -8.0590 42 1 1.5806 3.8677 -8.3711 43 1 0.5775 2.1315 -6.9485 44 1 1.8979 1.0451 -5.2023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457179351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:10 Heat of formation + Delta-G solvation = -20.025978 kcal Electronic energy + Delta-G solvation = -26917.144077 eV Core-core repulsion = 23221.241533 eV Total energy + Delta-G solvation = -3695.902544 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99464 -38.48398 -36.93362 -36.68887 -34.58497 -32.67366 -31.47110 -30.67516 -30.05555 -29.07320 -27.43792 -25.91379 -25.53889 -24.48364 -22.04956 -21.82251 -21.02839 -19.30972 -18.53644 -17.36260 -16.57004 -16.10026 -16.04999 -15.31740 -15.23065 -14.83022 -14.51435 -14.30444 -14.26840 -14.02405 -13.67656 -13.57864 -13.30385 -12.66596 -12.62027 -12.46184 -12.11499 -11.94055 -11.70478 -11.60550 -11.29306 -11.14366 -11.10337 -11.03632 -10.92137 -10.69554 -10.54551 -10.33930 -10.30354 -9.95098 -9.22852 -9.03613 -8.88651 -8.28574 -7.79888 -7.41813 -7.14786 -6.25706 -3.88821 1.45445 1.94926 3.05803 3.23067 3.30596 3.36665 3.40363 4.03873 4.22423 4.27298 4.58235 4.95290 5.00980 5.08777 5.20011 5.27374 5.38270 5.51513 5.65465 5.70538 5.72451 5.78344 5.84486 5.85859 6.03358 6.07264 6.13767 6.17945 6.20131 6.24538 6.28536 6.43549 6.53557 6.55778 6.60085 6.80621 6.84172 6.94782 7.11584 7.26814 7.36837 7.52739 7.57569 7.88000 7.90087 8.08592 8.48894 9.22913 9.66749 10.08122 10.77045 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.004454 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.418544 B = 6284.455577 C = 7165.507489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.364 6.364 3 C 0.052 3.948 4 C 0.115 3.885 5 N -0.433 5.433 6 C -0.321 4.321 7 H 0.087 0.913 8 C 0.048 3.952 9 N -0.865 5.865 10 Si 0.911 3.089 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.472 3.528 15 O -0.602 6.602 16 C -0.048 4.048 17 C -0.126 4.126 18 C 0.079 3.921 19 C -0.090 4.090 20 N -0.596 5.596 21 H 0.409 0.591 22 C 0.096 3.904 23 C -0.136 4.136 24 C -0.108 4.108 25 C -0.156 4.156 26 C -0.063 4.063 27 C -0.086 4.086 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.116 0.884 34 H 0.066 0.934 35 H 0.267 0.733 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.087 0.913 41 H 0.113 0.887 42 H 0.118 0.882 43 H 0.116 0.884 44 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.133 4.289 -9.940 11.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.282 6.282 3 C -0.026 4.026 4 C -0.009 4.009 5 N -0.151 5.151 6 C -0.449 4.449 7 H 0.104 0.896 8 C -0.157 4.157 9 N -0.503 5.503 10 Si 0.738 3.262 11 H -0.200 1.200 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.261 3.739 15 O -0.487 6.487 16 C -0.089 4.089 17 C -0.133 4.133 18 C -0.027 4.027 19 C -0.147 4.147 20 N -0.200 5.200 21 H 0.245 0.755 22 C -0.011 4.011 23 C -0.157 4.157 24 C -0.127 4.127 25 C -0.175 4.175 26 C -0.082 4.082 27 C -0.091 4.091 28 H 0.050 0.950 29 H 0.095 0.905 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.101 0.899 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.105 0.895 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.898 4.714 -9.718 10.966 hybrid contribution -0.200 -0.364 0.082 0.423 sum -2.098 4.350 -9.636 10.778 Atomic orbital electron populations 1.22637 0.83555 1.01640 0.98792 1.88133 1.17263 1.27816 1.95027 1.23046 0.96794 0.84205 0.98507 1.21433 0.88973 0.98918 0.91567 1.43336 1.56900 1.07254 1.07626 1.19254 1.41916 0.82215 1.01501 0.89584 1.25183 0.94138 0.99643 0.96694 1.69898 1.31437 1.37079 1.11866 0.86259 0.78960 0.83429 0.77516 1.20039 1.21249 1.19718 1.20338 0.81090 0.86387 0.86077 1.90520 1.56973 1.15393 1.85856 1.19743 1.03168 0.95242 0.90726 1.19711 0.91518 1.02380 0.99674 1.19980 0.97460 0.93654 0.91654 1.20433 0.90563 1.04424 0.99274 1.41555 1.10227 1.36570 1.31644 0.75538 1.18164 0.85028 0.99464 0.98493 1.19898 0.94283 1.02440 0.99074 1.20662 0.94055 0.98173 0.99806 1.20521 0.99763 0.99279 0.97956 1.20305 0.92104 0.98948 0.96799 1.19076 0.94121 0.98349 0.97569 0.95005 0.90498 0.95256 0.94549 0.94115 0.86683 0.91560 0.92236 0.89869 0.88952 0.90402 0.92131 0.89465 0.86893 0.86388 0.86559 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.63 16 2 O -0.36 -7.97 10.44 -35.23 -0.37 -8.34 16 3 C 0.05 1.13 6.24 37.16 0.23 1.36 16 4 C 0.12 2.80 5.29 -4.05 -0.02 2.77 16 5 N -0.43 -10.88 2.51 -114.82 -0.29 -11.17 16 6 C -0.32 -8.13 8.48 -14.94 -0.13 -8.25 16 7 H 0.09 2.10 6.98 -52.49 -0.37 1.74 16 8 C 0.05 1.22 4.93 -17.47 -0.09 1.14 16 9 N -0.87 -22.75 11.34 55.50 0.63 -22.13 16 10 Si 0.91 19.95 29.61 -169.99 -5.03 14.92 16 11 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 12 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 14 C 0.47 11.51 7.59 -10.98 -0.08 11.43 16 15 O -0.60 -16.02 15.70 5.55 0.09 -15.93 16 16 C -0.05 -1.00 4.64 -29.04 -0.13 -1.14 16 17 C -0.13 -2.45 4.81 -102.71 -0.49 -2.94 16 18 C 0.08 1.33 7.08 -81.77 -0.58 0.75 16 19 C -0.09 -1.27 10.18 36.01 0.37 -0.90 16 20 N -0.60 -8.86 6.07 -6.95 -0.04 -8.90 16 21 H 0.41 4.53 8.96 -40.82 -0.37 4.17 16 22 C 0.10 1.57 7.28 -83.99 -0.61 0.96 16 23 C -0.14 -1.90 10.08 -39.43 -0.40 -2.30 16 24 C -0.11 -1.43 10.01 -39.54 -0.40 -1.83 16 25 C -0.16 -2.26 9.97 -39.94 -0.40 -2.66 16 26 C -0.06 -1.09 10.05 -39.64 -0.40 -1.48 16 27 C -0.09 -1.62 6.35 -105.14 -0.67 -2.28 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 2.98 5.37 -51.92 -0.28 2.70 16 34 H 0.07 1.63 7.59 -51.93 -0.39 1.23 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.08 1.66 7.65 -51.93 -0.40 1.26 16 37 H 0.09 1.83 7.00 -51.92 -0.36 1.47 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.26 7.03 -51.93 -0.37 0.89 16 41 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 43 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 44 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -31.74 369.10 -8.45 -40.19 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -6.32 Total: 9.54 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: -2.68 Total: -3.75 kcal Atomic # 7 Polarization: -42.49 SS G_CDS: 0.30 Total: -42.19 kcal Atomic # 8 Polarization: -23.99 SS G_CDS: -0.28 Total: -24.27 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.03 Total: 14.92 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.74 -8.45 -40.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.166 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds