Wall clock time and date at job start Tue Mar 31 2020 11:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 114.00207 * 2 1 4 4 C 1.52996 * 109.47330 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47111 * 64.99616 * 4 3 2 6 6 C 1.37095 * 120.00170 * 264.55064 * 5 4 3 7 7 H 1.07996 * 119.99862 * 145.65400 * 6 5 4 8 8 C 1.38945 * 120.00139 * 325.65066 * 6 5 4 9 9 N 1.31407 * 120.00357 * 338.16421 * 8 6 5 10 10 Si 1.86804 * 120.00087 * 158.15813 * 8 6 5 11 11 H 1.48507 * 109.46611 * 60.00144 * 10 8 6 12 12 H 1.48500 * 109.47309 * 180.02562 * 10 8 6 13 13 H 1.48494 * 109.47218 * 300.00600 * 10 8 6 14 14 C 1.34776 * 119.99460 * 84.55718 * 5 4 3 15 15 O 1.21286 * 120.00399 * 359.97438 * 14 5 4 16 16 C 1.50706 * 119.99850 * 180.02562 * 14 5 4 17 17 C 1.50694 * 109.47122 * 179.97438 * 16 14 5 18 18 C 1.34238 * 126.50357 * 90.02019 * 17 16 14 19 19 C 1.50702 * 125.03674 * 359.97438 * 18 17 16 20 20 N 1.36832 * 109.93221 * 179.71203 * 18 17 16 21 21 H 0.96996 * 125.06777 * 180.24259 * 20 18 17 22 22 C 1.37693 * 109.87213 * 0.26872 * 20 18 17 23 23 C 1.39128 * 133.50803 * 179.97438 * 22 20 18 24 24 C 1.37742 * 119.77670 * 179.97438 * 23 22 20 25 25 C 1.38833 * 120.67206 * 0.04506 * 24 23 22 26 26 C 1.36629 * 120.52409 * 359.95860 * 25 24 23 27 27 C 1.39634 * 119.76365 * 0.02562 * 26 25 24 28 28 H 1.08997 * 109.47260 * 60.00076 * 1 2 3 29 29 H 1.09002 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46997 * 299.99719 * 1 2 3 31 31 H 1.09002 * 109.47029 * 59.99751 * 3 2 1 32 32 H 1.08996 * 109.46786 * 300.00192 * 3 2 1 33 33 H 1.09007 * 109.47089 * 304.99806 * 4 3 2 34 34 H 1.09001 * 109.47246 * 185.00033 * 4 3 2 35 35 H 0.97001 * 120.00436 * 179.97438 * 9 8 6 36 36 H 1.08995 * 109.47541 * 59.99044 * 16 14 5 37 37 H 1.09009 * 109.46604 * 299.99091 * 16 14 5 38 38 H 1.08995 * 109.47000 * 269.72049 * 19 18 17 39 39 H 1.09002 * 109.47233 * 149.71844 * 19 18 17 40 40 H 1.09002 * 109.46817 * 29.71758 * 19 18 17 41 41 H 1.07999 * 120.11012 * 359.97388 * 23 22 20 42 42 H 1.08005 * 119.66714 * 180.02562 * 24 23 22 43 43 H 1.07993 * 119.73902 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.12143 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9756 0.5643 -1.2527 6 6 4.2045 -0.7864 -1.3051 7 1 3.9849 -1.3366 -2.2081 8 6 4.7189 -1.4474 -0.1966 9 7 5.3776 -0.7765 0.7215 10 14 4.4742 -3.2901 -0.0111 11 1 5.0930 -3.9901 -1.1654 12 1 5.1133 -3.7501 1.2480 13 1 3.0215 -3.5946 0.0317 14 6 4.1557 1.3216 -2.3529 15 8 3.9530 2.5165 -2.3066 16 6 4.6080 0.6835 -3.6411 17 6 4.7312 1.7398 -4.7088 18 6 5.8257 2.4627 -4.9944 19 6 7.1500 2.3446 -4.2848 20 7 5.5626 3.3185 -6.0291 21 1 6.2003 3.9394 -6.4147 22 6 4.2574 3.1674 -6.4411 23 6 3.4888 3.7738 -7.4296 24 6 2.1755 3.3961 -7.6029 25 6 1.6087 2.4157 -6.7998 26 6 2.3453 1.8073 -5.8230 27 6 3.6786 2.1745 -5.6301 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8899 33 1 3.8515 0.5682 0.8410 34 1 3.9786 2.1765 0.0889 35 1 5.7364 -1.2379 1.4956 36 1 3.8782 -0.0638 -3.9523 37 1 5.5757 0.2052 -3.4894 38 1 7.1738 3.0362 -3.4427 39 1 7.9561 2.5873 -4.9772 40 1 7.2778 1.3250 -3.9213 41 1 3.9204 4.5380 -8.0590 42 1 1.5806 3.8677 -8.3711 43 1 0.5775 2.1315 -6.9485 44 1 1.8979 1.0451 -5.2023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457179351.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:38:09 Heat of formation + Delta-G solvation = -38.559135 kcal Electronic energy + Delta-G solvation = -26917.947735 eV Core-core repulsion = 23221.241533 eV Total energy + Delta-G solvation = -3696.706202 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -42.23371 -40.35527 -38.54472 -37.91219 -36.50813 -34.07738 -33.43475 -31.84596 -31.55666 -30.54956 -28.80880 -27.30568 -27.05288 -26.30811 -23.72349 -23.08285 -22.22523 -21.07797 -20.10553 -18.69414 -18.24121 -17.87749 -17.33498 -17.04644 -16.89586 -16.16959 -16.04491 -15.92636 -15.84078 -15.51511 -15.18119 -14.85169 -14.66650 -14.28878 -13.93027 -13.78500 -13.61067 -13.40310 -13.21386 -13.08733 -12.91470 -12.85936 -12.54967 -12.49231 -12.39171 -12.28726 -12.10215 -12.07514 -11.76922 -11.62118 -10.94932 -10.56061 -10.51093 -10.15274 -9.39238 -8.99018 -8.43075 -8.20130 -5.89051 0.26372 0.77262 1.47254 1.54252 1.61266 1.72941 2.14023 2.24986 2.41770 2.97230 3.02662 3.13386 3.32721 3.81526 3.94429 4.16581 4.24731 4.27149 4.31610 4.36846 4.42844 4.50146 4.52885 4.54091 4.63092 4.66031 4.66495 4.69561 4.79240 4.86029 4.90407 4.94627 5.02674 5.12537 5.14200 5.30593 5.39808 5.58520 5.62773 5.76194 5.88245 5.97064 6.07146 6.31426 6.40654 6.52295 6.80814 7.25875 7.72852 8.14232 8.82939 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013794 B = 0.004454 C = 0.003907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2029.418544 B = 6284.455577 C = 7165.507489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.396 6.396 3 C 0.065 3.935 4 C 0.113 3.887 5 N -0.442 5.442 6 C -0.333 4.333 7 H 0.089 0.911 8 C 0.012 3.988 9 N -0.893 5.893 10 Si 0.973 3.027 11 H -0.263 1.263 12 H -0.284 1.284 13 H -0.275 1.275 14 C 0.464 3.536 15 O -0.630 6.630 16 C -0.033 4.033 17 C -0.173 4.173 18 C 0.085 3.915 19 C -0.087 4.087 20 N -0.583 5.583 21 H 0.427 0.573 22 C 0.080 3.920 23 C -0.132 4.132 24 C -0.105 4.105 25 C -0.150 4.150 26 C -0.097 4.097 27 C -0.121 4.121 28 H 0.037 0.963 29 H 0.094 0.906 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.026 0.974 33 H 0.100 0.900 34 H 0.052 0.948 35 H 0.269 0.731 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.080 0.920 41 H 0.148 0.852 42 H 0.158 0.842 43 H 0.141 0.859 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.704 4.631 -11.792 12.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.315 6.315 3 C -0.012 4.012 4 C -0.011 4.011 5 N -0.160 5.160 6 C -0.461 4.461 7 H 0.107 0.893 8 C -0.191 4.191 9 N -0.531 5.531 10 Si 0.797 3.203 11 H -0.188 1.188 12 H -0.210 1.210 13 H -0.201 1.201 14 C 0.254 3.746 15 O -0.517 6.517 16 C -0.073 4.073 17 C -0.180 4.180 18 C -0.023 4.023 19 C -0.145 4.145 20 N -0.188 5.188 21 H 0.267 0.733 22 C -0.027 4.027 23 C -0.152 4.152 24 C -0.124 4.124 25 C -0.169 4.169 26 C -0.116 4.116 27 C -0.126 4.126 28 H 0.056 0.944 29 H 0.113 0.887 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.044 0.956 33 H 0.117 0.883 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.112 0.888 38 H 0.085 0.915 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.166 0.834 42 H 0.176 0.824 43 H 0.159 0.841 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.467 5.066 -11.594 12.891 hybrid contribution -0.091 -0.402 0.622 0.746 sum -2.558 4.665 -10.972 12.194 Atomic orbital electron populations 1.22885 0.80740 1.03320 1.00181 1.88062 1.20389 1.27727 1.95278 1.22795 0.94868 0.84535 0.99030 1.21371 0.91093 0.97633 0.91006 1.43544 1.56952 1.07494 1.08000 1.19471 1.42200 0.82409 1.01997 0.89304 1.25908 0.93545 1.03432 0.96173 1.69991 1.32142 1.38653 1.12333 0.85308 0.78460 0.78706 0.77782 1.18752 1.20997 1.20066 1.20985 0.80424 0.86163 0.87031 1.90472 1.58162 1.16643 1.86473 1.19534 1.02715 0.95608 0.89481 1.19751 0.93424 1.04026 1.00767 1.20281 0.97669 0.92851 0.91532 1.20473 0.90632 1.03770 0.99576 1.41480 1.10273 1.36204 1.30837 0.73310 1.18495 0.85615 0.99484 0.99101 1.20371 0.94323 1.02330 0.98205 1.21157 0.94186 0.97208 0.99863 1.20884 1.00669 0.98682 0.96703 1.20422 0.92424 1.00227 0.98536 1.19371 0.94825 0.99866 0.98553 0.94413 0.88743 0.92970 0.91821 0.95557 0.88257 0.92955 0.92118 0.90183 0.88825 0.91466 0.88238 0.90171 0.83395 0.82430 0.84120 0.87760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -17.34 10.44 -148.98 -1.56 -18.90 16 3 C 0.07 2.87 6.24 71.98 0.45 3.32 16 4 C 0.11 5.71 5.29 86.38 0.46 6.17 16 5 N -0.44 -23.10 2.51 -635.56 -1.60 -24.70 16 6 C -0.33 -17.30 8.48 84.04 0.71 -16.59 16 7 H 0.09 4.46 6.98 -2.91 -0.02 4.44 16 8 C 0.01 0.60 4.93 84.93 0.42 1.02 16 9 N -0.89 -47.91 11.34 21.66 0.25 -47.66 16 10 Si 0.97 41.03 29.61 68.60 2.03 43.06 16 11 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 14 C 0.46 23.70 7.59 87.66 0.67 24.36 16 15 O -0.63 -35.10 15.70 -3.05 -0.05 -35.15 16 16 C -0.03 -1.44 4.64 29.10 0.14 -1.31 16 17 C -0.17 -6.94 4.81 -18.63 -0.09 -7.02 16 18 C 0.08 2.87 7.08 40.87 0.29 3.16 16 19 C -0.09 -2.44 10.18 71.24 0.73 -1.72 16 20 N -0.58 -16.56 6.07 -175.90 -1.07 -17.63 16 21 H 0.43 8.50 8.96 -92.71 -0.83 7.66 16 22 C 0.08 2.55 7.28 39.03 0.28 2.83 16 23 C -0.13 -3.29 10.08 22.37 0.23 -3.06 16 24 C -0.11 -2.46 10.01 22.29 0.22 -2.23 16 25 C -0.15 -4.14 9.97 22.04 0.22 -3.92 16 26 C -0.10 -3.44 10.05 22.23 0.22 -3.21 16 27 C -0.12 -4.64 6.35 -20.20 -0.13 -4.77 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.10 5.34 5.37 -2.38 -0.01 5.33 16 34 H 0.05 2.71 7.59 -2.39 -0.02 2.69 16 35 H 0.27 13.70 8.31 -92.71 -0.77 12.93 16 36 H 0.08 3.42 7.65 -2.39 -0.02 3.40 16 37 H 0.09 3.91 7.00 -2.38 -0.02 3.90 16 38 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.08 2.34 7.03 -2.39 -0.02 2.33 16 41 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 43 H 0.14 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.10 3.77 8.06 -2.91 -0.02 3.75 16 Total: -1.00 -70.95 369.10 4.26 -66.70 By element: Atomic # 1 Polarization: 35.02 SS G_CDS: 0.19 Total: 35.21 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: 6.06 Total: -0.92 kcal Atomic # 7 Polarization: -87.57 SS G_CDS: -2.42 Total: -89.99 kcal Atomic # 8 Polarization: -52.44 SS G_CDS: -1.60 Total: -54.04 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -70.95 4.26 -66.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457179351.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.138 kcal (2) G-P(sol) polarization free energy of solvation -70.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds