Wall clock time and date at job start Tue Mar 31 2020 11:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00391 * 2 1 4 4 C 1.52997 * 109.47569 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47380 * 64.99811 * 4 3 2 6 6 C 1.36807 * 120.00323 * 264.80793 * 5 4 3 7 7 H 1.08001 * 120.00091 * 125.19912 * 6 5 4 8 8 C 1.39060 * 120.00244 * 305.20518 * 6 5 4 9 9 N 1.31361 * 119.99828 * 4.60585 * 8 6 5 10 10 Si 1.86796 * 120.00311 * 184.60707 * 8 6 5 11 11 H 1.48503 * 109.47068 * 89.99739 * 10 8 6 12 12 H 1.48501 * 109.47195 * 209.99753 * 10 8 6 13 13 H 1.48503 * 109.47352 * 329.99877 * 10 8 6 14 14 C 1.34774 * 120.00156 * 84.80588 * 5 4 3 15 15 O 1.21706 * 119.99543 * 3.44064 * 14 5 4 16 16 C 1.46897 * 120.00294 * 183.44217 * 14 5 4 17 17 C 1.36011 * 125.43442 * 172.53081 * 16 14 5 18 18 C 1.41559 * 107.72274 * 180.02562 * 17 16 14 19 19 C 1.40908 * 106.96686 * 0.21956 * 18 17 16 20 20 C 1.39156 * 119.43089 * 180.33648 * 19 18 17 21 21 C 1.37737 * 119.81254 * 359.72734 * 20 19 18 22 22 C 1.38893 * 120.64953 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.69542 * 180.02562 * 22 21 20 24 24 C 1.36479 * 120.61617 * 0.02562 * 22 21 20 25 25 C 1.50707 * 120.08701 * 179.97438 * 24 22 21 26 26 N 1.37541 * 107.40014 * 0.12877 * 19 18 17 27 27 H 0.96998 * 125.60280 * 180.24632 * 26 19 18 28 28 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47222 * 300.00434 * 1 2 3 30 30 H 1.08999 * 109.47044 * 59.99766 * 1 2 3 31 31 H 1.09003 * 109.47009 * 59.99733 * 3 2 1 32 32 H 1.09003 * 109.47354 * 300.00283 * 3 2 1 33 33 H 1.09006 * 109.46647 * 304.99828 * 4 3 2 34 34 H 1.08999 * 109.47881 * 185.00359 * 4 3 2 35 35 H 0.96998 * 120.00596 * 180.02562 * 9 8 6 36 36 H 1.07999 * 126.14038 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.09526 * 179.75314 * 20 19 18 38 38 H 1.07994 * 119.67819 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.46813 * 270.02464 * 23 22 21 40 40 H 1.09002 * 109.46906 * 30.01354 * 23 22 21 41 41 H 1.08992 * 109.47412 * 150.01873 * 23 22 21 42 42 H 1.08997 * 109.47263 * 89.99911 * 25 24 22 43 43 H 1.08999 * 109.47066 * 210.00110 * 25 24 22 44 44 H 1.09001 * 109.47088 * 329.99847 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1990 -0.7843 -1.3065 7 1 3.6946 -1.3860 -2.0480 8 6 5.0755 -1.3804 -0.4063 9 7 5.6192 -0.6656 0.5523 10 14 5.4796 -3.1976 -0.5603 11 1 6.6619 -3.3688 -1.4424 12 1 5.7801 -3.7535 0.7836 13 1 4.3182 -3.9153 -1.1444 14 6 4.1607 1.3223 -2.3516 15 8 4.0228 2.5299 -2.2881 16 6 4.5287 0.6910 -3.6259 17 6 4.6020 1.3242 -4.8274 18 6 4.9875 0.3667 -5.7962 19 6 5.1356 -0.8624 -5.1234 20 6 5.5205 -1.9919 -5.8394 21 6 5.7468 -1.8991 -7.1949 22 6 5.5952 -0.6875 -7.8568 23 6 5.8478 -0.6106 -9.3405 24 6 5.2196 0.4342 -7.1761 25 6 5.0592 1.7428 -7.9061 26 7 4.8443 -0.6431 -3.7972 27 1 4.8672 -1.3127 -3.0958 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 6.2308 -1.0812 1.1800 36 1 4.4020 2.3697 -5.0097 37 1 5.6411 -2.9385 -5.3339 38 1 6.0459 -2.7769 -7.7484 39 1 6.8961 -0.3709 -9.5186 40 1 5.6118 -1.5707 -9.7995 41 1 5.2185 0.1651 -9.7766 42 1 4.0333 1.8369 -8.2621 43 1 5.2859 2.5666 -7.2293 44 1 5.7424 1.7714 -8.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457199143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:27 Heat of formation + Delta-G solvation = -20.543095 kcal Electronic energy + Delta-G solvation = -26873.013033 eV Core-core repulsion = 23177.088065 eV Total energy + Delta-G solvation = -3695.924968 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.95226 -38.71869 -37.24256 -36.69336 -34.98465 -32.81535 -31.90900 -31.10898 -29.39640 -29.18287 -26.85310 -25.93476 -25.40919 -25.06906 -23.18492 -21.42217 -20.45421 -19.83695 -19.25985 -18.04292 -16.48618 -16.06825 -15.65968 -15.52761 -14.96242 -14.83324 -14.52631 -14.38799 -14.20107 -14.11582 -13.65742 -13.50120 -12.93236 -12.83889 -12.65865 -12.55352 -12.31413 -12.12546 -12.07845 -11.79317 -11.73178 -11.44883 -11.23361 -11.12839 -10.96939 -10.92508 -10.56857 -10.49179 -10.36552 -10.22660 -9.28353 -9.13501 -9.08195 -8.85202 -7.65136 -7.47611 -7.03583 -6.60157 -4.53397 1.38049 2.08442 2.84847 2.97780 3.04514 3.04845 3.83398 3.87109 4.24584 4.37925 4.42416 4.59192 4.79575 5.10327 5.17543 5.41032 5.48719 5.60040 5.61752 5.66615 5.74726 5.75404 5.80573 5.88279 5.92530 5.94331 5.99242 6.05290 6.09583 6.15690 6.22290 6.25170 6.36144 6.50605 6.60590 6.62159 6.86845 7.04951 7.10575 7.20605 7.27881 7.33530 7.70248 7.72938 7.89834 8.06042 8.32787 8.77214 9.24633 9.67437 10.40405 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.004636 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.489834 B = 6038.417772 C = 7129.572516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.367 6.367 3 C 0.050 3.950 4 C 0.120 3.880 5 N -0.425 5.425 6 C -0.352 4.352 7 H 0.086 0.914 8 C 0.060 3.940 9 N -0.847 5.847 10 Si 0.900 3.100 11 H -0.270 1.270 12 H -0.273 1.273 13 H -0.262 1.262 14 C 0.539 3.461 15 O -0.587 6.587 16 C 0.083 3.917 17 C -0.164 4.164 18 C -0.106 4.106 19 C 0.084 3.916 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.130 4.130 23 C -0.104 4.104 24 C -0.039 4.039 25 C -0.112 4.112 26 N -0.551 5.551 27 H 0.431 0.569 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.276 0.724 36 H 0.143 0.857 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.060 0.940 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.380 -1.810 -9.155 9.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C -0.028 4.028 4 C -0.003 4.003 5 N -0.142 5.142 6 C -0.480 4.480 7 H 0.104 0.896 8 C -0.150 4.150 9 N -0.480 5.480 10 Si 0.725 3.275 11 H -0.195 1.195 12 H -0.198 1.198 13 H -0.186 1.186 14 C 0.328 3.672 15 O -0.471 6.471 16 C -0.030 4.030 17 C -0.190 4.190 18 C -0.111 4.111 19 C -0.028 4.028 20 C -0.149 4.149 21 C -0.123 4.123 22 C -0.132 4.132 23 C -0.160 4.160 24 C -0.040 4.040 25 C -0.169 4.169 26 N -0.164 5.164 27 H 0.285 0.715 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.161 0.839 37 H 0.133 0.867 38 H 0.135 0.865 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.227 -1.514 -8.660 9.069 hybrid contribution -0.043 -1.157 0.582 1.296 sum -2.271 -2.671 -8.079 8.807 Atomic orbital electron populations 1.22647 0.83275 1.01777 0.98932 1.88112 1.17515 1.27778 1.95073 1.23073 0.96478 0.84358 0.98877 1.21499 0.89064 0.99191 0.90573 1.43031 1.56811 1.06925 1.07450 1.19143 1.25684 0.82933 1.20262 0.89647 1.25679 0.94487 0.99768 0.95053 1.69720 1.27265 1.36959 1.14078 0.86335 0.79569 0.82518 0.79094 1.19495 1.19816 1.18612 1.17677 0.80206 0.85911 0.83383 1.90680 1.57394 1.13588 1.85444 1.20406 1.03862 0.83420 0.95316 1.20635 1.09197 0.99134 0.90071 1.18005 1.06740 0.93306 0.93027 1.18595 1.03079 0.95706 0.85384 1.19985 1.04961 0.95977 0.93970 1.20516 1.01641 0.96945 0.93171 1.19039 1.05355 0.93148 0.95616 1.20679 1.01299 1.01871 0.92195 1.18895 0.98716 0.94973 0.91404 1.20756 1.01608 0.94786 0.99730 1.44004 1.55141 1.10082 1.07174 0.71543 0.90405 0.95049 0.94955 0.94005 0.94027 0.87146 0.90901 0.91359 0.83912 0.86689 0.86476 0.92089 0.92330 0.91915 0.91524 0.91509 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.56 10.42 -35.23 -0.37 -7.93 16 3 C 0.05 1.00 6.25 37.16 0.23 1.24 16 4 C 0.12 2.77 5.26 -4.05 -0.02 2.75 16 5 N -0.42 -10.45 2.40 -116.23 -0.28 -10.73 16 6 C -0.35 -8.52 6.23 -15.03 -0.09 -8.61 16 7 H 0.09 2.04 6.15 -52.49 -0.32 1.72 16 8 C 0.06 1.44 5.34 -17.45 -0.09 1.35 16 9 N -0.85 -21.25 11.45 55.50 0.64 -20.62 16 10 Si 0.90 18.23 29.33 -169.99 -4.99 13.25 16 11 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 12 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 13 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 14 C 0.54 13.46 7.57 -12.76 -0.10 13.36 16 15 O -0.59 -15.41 16.49 5.18 0.09 -15.33 16 16 C 0.08 1.90 6.70 -82.31 -0.55 1.34 16 17 C -0.16 -3.39 10.12 -39.12 -0.40 -3.79 16 18 C -0.11 -2.03 5.98 -106.93 -0.64 -2.67 16 19 C 0.08 1.65 7.25 -83.95 -0.61 1.04 16 20 C -0.13 -2.14 10.08 -39.42 -0.40 -2.54 16 21 C -0.10 -1.51 9.66 -39.52 -0.38 -1.89 16 22 C -0.13 -1.89 5.84 -105.01 -0.61 -2.50 16 23 C -0.10 -1.12 9.15 36.01 0.33 -0.79 16 24 C -0.04 -0.63 5.88 -104.56 -0.62 -1.25 16 25 C -0.11 -1.45 9.07 36.01 0.33 -1.12 16 26 N -0.55 -11.76 5.44 -7.36 -0.04 -11.80 16 27 H 0.43 9.22 4.83 -40.82 -0.20 9.02 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.11 2.70 6.06 -51.93 -0.31 2.39 16 34 H 0.07 1.69 7.53 -51.93 -0.39 1.30 16 35 H 0.28 6.53 8.31 -40.82 -0.34 6.19 16 36 H 0.14 2.78 8.05 -52.49 -0.42 2.36 16 37 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 38 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 41 H 0.06 0.62 6.64 -51.93 -0.34 0.27 16 42 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.88 7.83 -51.93 -0.41 0.47 16 44 H 0.06 0.69 6.65 -51.93 -0.35 0.35 16 LS Contribution 361.49 15.07 5.45 5.45 Total: -1.00 -28.58 361.49 -8.12 -36.69 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -6.10 Total: 13.49 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: -2.51 Total: -2.49 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: 0.32 Total: -43.14 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.28 Total: -23.26 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -4.99 Total: 13.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.58 -8.12 -36.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -28.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds