Wall clock time and date at job start Tue Mar 31 2020 11:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42897 * 114.00391 * 2 1 4 4 C 1.52997 * 109.47569 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47380 * 64.99811 * 4 3 2 6 6 C 1.36807 * 120.00323 * 264.80793 * 5 4 3 7 7 H 1.08001 * 120.00091 * 125.19912 * 6 5 4 8 8 C 1.39060 * 120.00244 * 305.20518 * 6 5 4 9 9 N 1.31361 * 119.99828 * 4.60585 * 8 6 5 10 10 Si 1.86796 * 120.00311 * 184.60707 * 8 6 5 11 11 H 1.48503 * 109.47068 * 89.99739 * 10 8 6 12 12 H 1.48501 * 109.47195 * 209.99753 * 10 8 6 13 13 H 1.48503 * 109.47352 * 329.99877 * 10 8 6 14 14 C 1.34774 * 120.00156 * 84.80588 * 5 4 3 15 15 O 1.21706 * 119.99543 * 3.44064 * 14 5 4 16 16 C 1.46897 * 120.00294 * 183.44217 * 14 5 4 17 17 C 1.36011 * 125.43442 * 172.53081 * 16 14 5 18 18 C 1.41559 * 107.72274 * 180.02562 * 17 16 14 19 19 C 1.40908 * 106.96686 * 0.21956 * 18 17 16 20 20 C 1.39156 * 119.43089 * 180.33648 * 19 18 17 21 21 C 1.37737 * 119.81254 * 359.72734 * 20 19 18 22 22 C 1.38893 * 120.64953 * 0.02562 * 21 20 19 23 23 C 1.50702 * 119.69542 * 180.02562 * 22 21 20 24 24 C 1.36479 * 120.61617 * 0.02562 * 22 21 20 25 25 C 1.50707 * 120.08701 * 179.97438 * 24 22 21 26 26 N 1.37541 * 107.40014 * 0.12877 * 19 18 17 27 27 H 0.96998 * 125.60280 * 180.24632 * 26 19 18 28 28 H 1.08997 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47222 * 300.00434 * 1 2 3 30 30 H 1.08999 * 109.47044 * 59.99766 * 1 2 3 31 31 H 1.09003 * 109.47009 * 59.99733 * 3 2 1 32 32 H 1.09003 * 109.47354 * 300.00283 * 3 2 1 33 33 H 1.09006 * 109.46647 * 304.99828 * 4 3 2 34 34 H 1.08999 * 109.47881 * 185.00359 * 4 3 2 35 35 H 0.96998 * 120.00596 * 180.02562 * 9 8 6 36 36 H 1.07999 * 126.14038 * 0.02562 * 17 16 14 37 37 H 1.07998 * 120.09526 * 179.75314 * 20 19 18 38 38 H 1.07994 * 119.67819 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.46813 * 270.02464 * 23 22 21 40 40 H 1.09002 * 109.46906 * 30.01354 * 23 22 21 41 41 H 1.08992 * 109.47412 * 150.01873 * 23 22 21 42 42 H 1.08997 * 109.47263 * 89.99911 * 25 24 22 43 43 H 1.08999 * 109.47066 * 210.00110 * 25 24 22 44 44 H 1.09001 * 109.47088 * 329.99847 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2527 6 6 4.1990 -0.7843 -1.3065 7 1 3.6946 -1.3860 -2.0480 8 6 5.0755 -1.3804 -0.4063 9 7 5.6192 -0.6656 0.5523 10 14 5.4796 -3.1976 -0.5603 11 1 6.6619 -3.3688 -1.4424 12 1 5.7801 -3.7535 0.7836 13 1 4.3182 -3.9153 -1.1444 14 6 4.1607 1.3223 -2.3516 15 8 4.0228 2.5299 -2.2881 16 6 4.5287 0.6910 -3.6259 17 6 4.6020 1.3242 -4.8274 18 6 4.9875 0.3667 -5.7962 19 6 5.1356 -0.8624 -5.1234 20 6 5.5205 -1.9919 -5.8394 21 6 5.7468 -1.8991 -7.1949 22 6 5.5952 -0.6875 -7.8568 23 6 5.8478 -0.6106 -9.3405 24 6 5.2196 0.4342 -7.1761 25 6 5.0592 1.7428 -7.9061 26 7 4.8443 -0.6431 -3.7972 27 1 4.8672 -1.3127 -3.0958 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5681 0.8410 34 1 3.9786 2.1764 0.0890 35 1 6.2308 -1.0812 1.1800 36 1 4.4020 2.3697 -5.0097 37 1 5.6411 -2.9385 -5.3339 38 1 6.0459 -2.7769 -7.7484 39 1 6.8961 -0.3709 -9.5186 40 1 5.6118 -1.5707 -9.7995 41 1 5.2185 0.1651 -9.7766 42 1 4.0333 1.8369 -8.2621 43 1 5.2859 2.5666 -7.2293 44 1 5.7424 1.7714 -8.7550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457199143.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:25 Heat of formation + Delta-G solvation = -36.183268 kcal Electronic energy + Delta-G solvation = -26873.691242 eV Core-core repulsion = 23177.088065 eV Total energy + Delta-G solvation = -3696.603177 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.25 seconds Orbital eigenvalues (eV) -42.44323 -40.44584 -38.70174 -38.17027 -36.83601 -34.06825 -33.76522 -32.43212 -31.02112 -30.57666 -28.13980 -27.42499 -26.78677 -26.53342 -24.75136 -22.99124 -21.81179 -21.39971 -20.96334 -19.68569 -18.11519 -17.58230 -17.34431 -17.07228 -16.56614 -16.26690 -16.06893 -15.83597 -15.70318 -15.57134 -15.09171 -14.93382 -14.38332 -14.18828 -14.15988 -13.72754 -13.60151 -13.51394 -13.44081 -13.22952 -13.20132 -12.89124 -12.68116 -12.65192 -12.54006 -12.17979 -12.12607 -11.89382 -11.73647 -11.57345 -11.13239 -10.78039 -10.55717 -10.54519 -9.49724 -8.91047 -8.48992 -8.40109 -6.42350 -0.03283 0.79250 1.24834 1.36453 1.38948 1.46434 2.14130 2.30552 2.56086 2.79102 2.90470 2.97942 3.06713 3.85864 4.03333 4.13053 4.20710 4.25896 4.36715 4.38926 4.47249 4.48204 4.53557 4.55999 4.59721 4.72484 4.76685 4.82268 4.87720 4.93336 4.96828 5.00915 5.05904 5.16286 5.18245 5.31820 5.34659 5.39149 5.58904 5.85100 5.88596 5.91328 5.96212 6.19987 6.33765 6.35821 6.75216 6.90989 7.36810 7.80188 8.58335 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013546 B = 0.004636 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.489834 B = 6038.417772 C = 7129.572516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.062 3.938 4 C 0.118 3.882 5 N -0.431 5.431 6 C -0.358 4.358 7 H 0.086 0.914 8 C 0.022 3.978 9 N -0.879 5.879 10 Si 0.962 3.038 11 H -0.263 1.263 12 H -0.272 1.272 13 H -0.253 1.253 14 C 0.527 3.473 15 O -0.616 6.616 16 C 0.040 3.960 17 C -0.155 4.155 18 C -0.129 4.129 19 C 0.069 3.931 20 C -0.148 4.148 21 C -0.086 4.086 22 C -0.128 4.128 23 C -0.103 4.103 24 C -0.049 4.049 25 C -0.111 4.111 26 N -0.559 5.559 27 H 0.428 0.572 28 H 0.094 0.906 29 H 0.054 0.946 30 H 0.036 0.964 31 H 0.072 0.928 32 H 0.030 0.970 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.278 0.722 36 H 0.145 0.855 37 H 0.131 0.869 38 H 0.156 0.844 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.281 -3.767 -12.053 12.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C -0.016 4.016 4 C -0.005 4.005 5 N -0.148 5.148 6 C -0.486 4.486 7 H 0.103 0.897 8 C -0.185 4.185 9 N -0.514 5.514 10 Si 0.783 3.217 11 H -0.188 1.188 12 H -0.197 1.197 13 H -0.176 1.176 14 C 0.317 3.683 15 O -0.504 6.504 16 C -0.072 4.072 17 C -0.183 4.183 18 C -0.134 4.134 19 C -0.042 4.042 20 C -0.169 4.169 21 C -0.105 4.105 22 C -0.129 4.129 23 C -0.159 4.159 24 C -0.050 4.050 25 C -0.167 4.167 26 N -0.171 5.171 27 H 0.279 0.721 28 H 0.113 0.887 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.163 0.837 37 H 0.149 0.851 38 H 0.173 0.827 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.075 0.925 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.146 -3.474 -11.567 12.267 hybrid contribution -0.075 -0.570 1.304 1.425 sum -2.222 -4.044 -10.264 11.253 Atomic orbital electron populations 1.22888 0.80563 1.03390 1.00262 1.88044 1.20527 1.27783 1.95330 1.22852 0.94370 0.84680 0.99664 1.21457 0.91346 0.97969 0.89719 1.43222 1.56613 1.07283 1.07693 1.19287 1.26055 0.82772 1.20452 0.89711 1.26427 0.93995 1.03717 0.94384 1.69834 1.27968 1.38703 1.14849 0.85403 0.79650 0.77562 0.79059 1.18818 1.19678 1.17649 1.18075 0.80048 0.85829 0.84382 1.90620 1.58996 1.14587 1.86150 1.20198 1.07401 0.84647 0.94934 1.20796 1.07862 0.99468 0.90144 1.18240 1.08069 0.92671 0.94429 1.19052 1.03467 0.97092 0.84619 1.20325 1.05757 0.95781 0.95009 1.21054 0.98713 0.98387 0.92372 1.19581 1.03200 0.92336 0.97815 1.20765 1.02464 1.03581 0.89090 1.19315 0.98237 0.97152 0.90277 1.20817 1.03049 0.92797 1.00082 1.43772 1.56071 1.09279 1.07997 0.72075 0.88721 0.92718 0.94523 0.90998 0.95208 0.88719 0.92136 0.91219 0.83734 0.85108 0.82669 0.90653 0.90375 0.90743 0.90328 0.92454 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.40 -16.58 10.42 -148.98 -1.55 -18.13 16 3 C 0.06 2.56 6.25 71.98 0.45 3.01 16 4 C 0.12 5.75 5.26 86.38 0.45 6.21 16 5 N -0.43 -22.35 2.40 -639.85 -1.54 -23.89 16 6 C -0.36 -17.96 6.23 84.11 0.52 -17.44 16 7 H 0.09 4.21 6.15 -2.91 -0.02 4.19 16 8 C 0.02 1.05 5.34 84.96 0.45 1.51 16 9 N -0.88 -45.65 11.45 21.68 0.25 -45.40 16 10 Si 0.96 37.63 29.33 68.60 2.01 39.65 16 11 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 12 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 13 H -0.25 -9.44 7.11 99.48 0.71 -8.73 16 14 C 0.53 27.88 7.57 86.51 0.66 28.53 16 15 O -0.62 -34.44 16.49 -4.37 -0.07 -34.51 16 16 C 0.04 1.94 6.70 39.90 0.27 2.21 16 17 C -0.16 -6.69 10.12 22.57 0.23 -6.46 16 18 C -0.13 -4.95 5.98 -21.36 -0.13 -5.08 16 19 C 0.07 2.69 7.25 39.12 0.28 2.97 16 20 C -0.15 -4.64 10.08 22.37 0.23 -4.42 16 21 C -0.09 -2.17 9.66 22.31 0.22 -1.96 16 22 C -0.13 -3.23 5.84 -20.12 -0.12 -3.35 16 23 C -0.10 -1.68 9.15 71.24 0.65 -1.02 16 24 C -0.05 -1.48 5.88 -19.83 -0.12 -1.59 16 25 C -0.11 -2.60 9.07 71.24 0.65 -1.96 16 26 N -0.56 -24.64 5.44 -177.19 -0.96 -25.60 16 27 H 0.43 18.88 4.83 -92.71 -0.45 18.43 16 28 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 29 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 32 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.09 4.88 6.06 -2.38 -0.01 4.87 16 34 H 0.06 3.00 7.53 -2.39 -0.02 2.98 16 35 H 0.28 13.53 8.31 -92.71 -0.77 12.76 16 36 H 0.14 5.92 8.05 -2.91 -0.02 5.90 16 37 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 38 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 39 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.02 8.08 -2.39 -0.02 1.00 16 41 H 0.07 1.08 6.64 -2.39 -0.02 1.06 16 42 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.06 1.45 7.83 -2.39 -0.02 1.43 16 44 H 0.09 1.62 6.65 -2.39 -0.02 1.60 16 Total: -1.00 -65.32 361.49 4.65 -60.67 By element: Atomic # 1 Polarization: 43.47 SS G_CDS: 0.58 Total: 44.05 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: 5.94 Total: 3.16 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.25 Total: -94.88 kcal Atomic # 8 Polarization: -51.02 SS G_CDS: -1.62 Total: -52.64 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.01 Total: 39.65 kcal Total: -65.32 4.65 -60.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457199143.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.488 kcal (2) G-P(sol) polarization free energy of solvation -65.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.25 seconds