Wall clock time and date at job start Tue Mar 31 2020 11:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35972 * 116.99838 * 2 1 4 4 C 1.39187 * 119.90669 * 359.72684 * 3 2 1 5 5 C 1.37726 * 120.58192 * 180.25826 * 4 3 2 6 6 C 1.39123 * 120.00203 * 0.03407 * 5 4 3 7 7 C 1.40365 * 119.45593 * 359.96416 * 6 5 4 8 8 C 1.38205 * 119.91137 * 180.02562 * 3 2 1 9 9 C 1.47453 * 105.90470 * 179.97438 * 7 6 5 10 10 C 1.46884 * 126.75868 * 179.97438 * 9 7 6 11 11 O 1.21676 * 120.00544 * 90.00181 * 10 9 7 12 12 N 1.34782 * 120.00048 * 270.00151 * 10 9 7 13 13 C 1.46500 * 120.00078 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.46735 * 325.00131 * 13 12 10 15 15 C 1.52999 * 109.47298 * 84.99763 * 13 12 10 16 16 C 1.50696 * 109.47180 * 204.99918 * 13 12 10 17 17 H 1.08003 * 120.00035 * 359.97438 * 16 13 12 18 18 C 1.37878 * 120.00058 * 179.97438 * 16 13 12 19 19 N 1.31512 * 119.99994 * 0.02562 * 18 16 13 20 20 Si 1.86794 * 119.99943 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47484 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47144 * 120.00328 * 20 18 16 23 23 H 1.48507 * 109.47446 * 240.00038 * 20 18 16 24 24 C 1.36396 * 106.48118 * 0.02562 * 9 7 6 25 25 C 1.50695 * 125.10908 * 180.02562 * 24 9 7 26 26 N 1.35433 * 109.77682 * 359.97438 * 24 9 7 27 27 C 1.46502 * 124.79185 * 180.02562 * 26 24 9 28 28 H 1.09008 * 109.46911 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46948 * 299.99362 * 1 2 3 30 30 H 1.08989 * 109.47353 * 60.00237 * 1 2 3 31 31 H 1.07997 * 119.71394 * 0.27307 * 4 3 2 32 32 H 1.07991 * 119.99863 * 180.02562 * 5 4 3 33 33 H 1.08005 * 120.18300 * 359.70223 * 8 3 2 34 34 H 0.96998 * 120.00217 * 359.97438 * 12 10 9 35 35 H 1.08999 * 109.47121 * 60.00192 * 15 13 12 36 36 H 1.09003 * 109.47388 * 180.02562 * 15 13 12 37 37 H 1.09000 * 109.47218 * 300.00220 * 15 13 12 38 38 H 0.97002 * 120.00237 * 179.97438 * 19 18 16 39 39 H 1.09009 * 109.46901 * 269.94982 * 25 24 9 40 40 H 1.08996 * 109.47774 * 29.95025 * 25 24 9 41 41 H 1.09003 * 109.47407 * 149.95218 * 25 24 9 42 42 H 1.09003 * 109.46713 * 269.99406 * 27 26 24 43 43 H 1.08993 * 109.47344 * 29.99672 * 27 26 24 44 44 H 1.09004 * 109.46729 * 150.00233 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2863 2.3776 -0.0058 5 6 1.8970 3.6120 -0.0112 6 6 3.2854 3.7013 -0.0116 7 6 4.0526 2.5259 -0.0058 8 6 3.4265 1.2818 -0.0005 9 6 5.4610 2.9626 -0.0086 10 6 6.6491 2.0990 -0.0041 11 8 7.1411 1.7353 -1.0558 12 7 7.1945 1.7094 1.1652 13 6 8.3799 0.8485 1.1698 14 1 8.3274 0.1535 0.3317 15 6 9.6370 1.7108 1.0392 16 6 8.4337 0.0745 2.4617 17 1 7.6623 0.2106 3.2053 18 6 9.4677 -0.8073 2.6945 19 7 10.4073 -0.9727 1.7894 20 14 9.5347 -1.7662 4.2962 21 1 8.3687 -1.4016 5.1406 22 1 9.4977 -3.2216 4.0038 23 1 10.7906 -1.4380 5.0175 24 6 5.4432 4.3265 -0.0152 25 6 6.6645 5.2092 -0.0206 26 7 4.1629 4.7680 -0.0172 27 6 3.7649 6.1779 -0.0245 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5137 -0.8899 31 1 0.2082 2.3139 -0.0057 32 1 1.2982 4.5107 -0.0152 33 1 4.0163 0.3770 0.0039 34 1 6.8027 1.9995 2.0038 35 1 9.6896 2.4058 1.8772 36 1 10.5190 1.0702 1.0421 37 1 9.5981 2.2706 0.1047 38 1 11.1350 -1.5928 1.9533 39 1 6.9595 5.4277 1.0058 40 1 7.4801 4.6980 -0.5320 41 1 6.4375 6.1405 -0.5395 42 1 3.6663 6.5329 1.0014 43 1 4.5225 6.7667 -0.5415 44 1 2.8095 6.2831 -0.5386 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755087.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:40 Heat of formation + Delta-G solvation = -38.749544 kcal Electronic energy + Delta-G solvation = -26309.180859 eV Core-core repulsion = 22612.466400 eV Total energy + Delta-G solvation = -3696.714459 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.58912 -40.46745 -40.03997 -37.08514 -36.67010 -34.41520 -33.91136 -31.97037 -31.31863 -30.82456 -28.19876 -27.80176 -27.37707 -27.12156 -23.95123 -23.14786 -22.34081 -21.55427 -20.54265 -19.20776 -18.63869 -17.94628 -17.27647 -17.13748 -16.78863 -16.63756 -16.39154 -16.27272 -15.91718 -15.37927 -15.03666 -14.62893 -14.44785 -14.23535 -14.01152 -13.95644 -13.77048 -13.69446 -13.55483 -13.20206 -13.07717 -13.01528 -12.87133 -12.76781 -12.54904 -12.50719 -12.27786 -12.14087 -11.74052 -11.31690 -11.10963 -10.87784 -10.61135 -10.55514 -9.76360 -8.93682 -8.47660 -8.17863 -6.35595 -0.01501 0.56630 1.35848 1.42642 1.44017 1.56485 1.66870 1.79394 2.37651 2.42711 2.73601 2.83803 3.11876 3.61254 3.64665 3.87445 3.96747 4.15187 4.21659 4.33790 4.42257 4.46482 4.47877 4.51693 4.58983 4.65100 4.72129 4.75528 4.77057 4.78379 4.92657 4.94885 5.04865 5.08555 5.20921 5.30725 5.43314 5.54770 5.58350 5.61179 5.69544 5.91239 6.01836 6.09682 6.30584 6.53801 6.71162 6.96570 7.31020 7.54110 8.88748 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011719 B = 0.004047 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2388.765481 B = 6917.226182 C = 8624.510593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.106 3.894 4 C -0.179 4.179 5 C -0.065 4.065 6 C 0.052 3.948 7 C -0.058 4.058 8 C -0.157 4.157 9 C -0.274 4.274 10 C 0.586 3.414 11 O -0.604 6.604 12 N -0.694 5.694 13 C 0.268 3.732 14 H -0.007 1.007 15 C -0.129 4.129 16 C -0.547 4.547 17 H 0.068 0.932 18 C 0.016 3.984 19 N -0.916 5.916 20 Si 0.974 3.026 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.153 3.847 25 C -0.098 4.098 26 N -0.463 5.463 27 C 0.064 3.936 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.014 0.986 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.940 17.292 -0.536 27.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.061 3.939 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.052 4.052 7 C -0.063 4.063 8 C -0.177 4.177 9 C -0.285 4.285 10 C 0.373 3.627 11 O -0.487 6.487 12 N -0.341 5.341 13 C 0.165 3.835 14 H 0.011 0.989 15 C -0.188 4.188 16 C -0.585 4.585 17 H 0.086 0.914 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.039 3.961 25 C -0.155 4.155 26 N -0.145 5.145 27 C -0.075 4.075 28 H 0.130 0.870 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.033 0.967 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.109 0.891 43 H 0.122 0.878 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.448 17.088 -1.287 27.453 hybrid contribution 0.434 -1.206 0.729 1.475 sum -21.014 15.882 -0.558 26.346 Atomic orbital electron populations 1.23365 0.76124 1.05431 1.02662 1.86081 1.23847 1.26993 1.89195 1.18700 0.90863 0.85521 0.98839 1.21239 1.01230 0.90109 1.07241 1.20224 0.89042 0.99117 1.00064 1.18291 0.92410 0.85578 1.08887 1.18607 0.91352 0.92934 1.03436 1.19549 0.92715 0.96153 1.09283 1.19694 0.91404 0.93544 1.23838 1.17788 0.82318 0.79238 0.83384 1.90699 1.65362 1.59095 1.33529 1.46333 1.30360 1.49719 1.07652 1.18416 0.81458 0.87673 0.95945 0.98872 1.21853 1.01025 0.98723 0.97200 1.21531 1.09997 1.24557 1.02439 0.91426 1.25794 0.94677 0.97337 1.00608 1.70060 1.12932 1.36550 1.35902 0.85277 0.78453 0.77787 0.78689 1.18736 1.20885 1.19824 1.20536 0.87078 0.91619 0.96900 1.20705 0.91104 0.98669 1.05003 1.43613 1.02711 1.07184 1.60997 1.22447 1.04016 0.75918 1.05125 0.87007 0.91066 0.91108 0.81169 0.81205 0.89045 0.76513 0.93704 0.91325 0.96739 0.92448 0.87963 0.91832 0.86994 0.89057 0.87804 0.87729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.35 -9.78 10.49 -93.23 -0.98 -10.76 16 3 C 0.11 3.17 6.68 22.49 0.15 3.32 16 4 C -0.18 -3.67 9.01 22.38 0.20 -3.46 16 5 C -0.06 -1.23 9.91 22.36 0.22 -1.01 16 6 C 0.05 1.38 6.79 38.88 0.26 1.65 16 7 C -0.06 -2.14 6.36 -20.08 -0.13 -2.27 16 8 C -0.16 -5.98 10.03 22.51 0.23 -5.76 16 9 C -0.27 -10.70 6.02 -19.01 -0.11 -10.82 16 10 C 0.59 28.39 7.12 86.51 0.62 29.00 16 11 O -0.60 -34.81 16.77 -4.27 -0.07 -34.89 16 12 N -0.69 -33.50 5.07 -449.87 -2.28 -35.77 16 13 C 0.27 15.15 2.56 44.24 0.11 15.27 16 14 H -0.01 -0.44 7.58 -2.38 -0.02 -0.46 16 15 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 16 C -0.55 -31.09 8.73 25.60 0.22 -30.87 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 18 C 0.02 0.89 5.30 84.66 0.45 1.34 16 19 N -0.92 -54.56 11.32 21.45 0.24 -54.32 16 20 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 24 C 0.15 4.38 6.86 41.57 0.29 4.66 16 25 C -0.10 -2.13 9.82 71.23 0.70 -1.43 16 26 N -0.46 -10.21 3.15 -523.90 -1.65 -11.86 16 27 C 0.06 0.59 10.76 127.77 1.37 1.97 16 28 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 29 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 30 H 0.07 0.81 7.64 -2.39 -0.02 0.79 16 31 H 0.17 2.05 6.26 -2.91 -0.02 2.03 16 32 H 0.17 1.60 8.01 -2.92 -0.02 1.58 16 33 H 0.09 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.40 17.25 8.52 -92.71 -0.79 16.46 16 35 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 37 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 39 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 40 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 41 H 0.11 1.48 6.86 -2.39 -0.02 1.47 16 42 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.10 0.60 6.82 -2.39 -0.02 0.59 16 44 H 0.10 0.53 8.03 -2.38 -0.02 0.51 16 Total: -1.00 -84.75 368.78 3.89 -80.87 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.24 Total: 23.91 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 6.36 Total: -3.22 kcal Atomic # 7 Polarization: -98.27 SS G_CDS: -3.68 Total: -101.95 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -1.05 Total: -45.65 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.75 3.89 -80.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755087.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.117 kcal (2) G-P(sol) polarization free energy of solvation -84.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds