Wall clock time and date at job start Tue Mar 31 2020 11:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35971 * 117.00090 * 2 1 4 4 C 1.39186 * 119.90736 * 0.02571 * 3 2 1 5 5 C 1.37724 * 120.57599 * 179.60630 * 4 3 2 6 6 C 1.39122 * 120.00655 * 0.60146 * 5 4 3 7 7 C 1.40364 * 119.45284 * 359.55927 * 6 5 4 8 8 C 1.38209 * 119.90706 * 180.02562 * 3 2 1 9 9 C 1.47454 * 105.90242 * 180.18929 * 7 6 5 10 10 C 1.46893 * 126.76062 * 179.84013 * 9 7 6 11 11 O 1.21667 * 119.99730 * 269.71266 * 10 9 7 12 12 N 1.34779 * 119.99862 * 89.71231 * 10 9 7 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.36400 * 106.47972 * 359.57785 * 9 7 6 25 25 C 1.50699 * 125.11191 * 180.22947 * 24 9 7 26 26 N 1.35431 * 109.77842 * 0.26446 * 24 9 7 27 27 C 1.46495 * 124.79571 * 180.02562 * 26 24 9 28 28 H 1.08997 * 109.47121 * 299.99763 * 1 2 3 29 29 H 1.08999 * 109.47517 * 59.99525 * 1 2 3 30 30 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.71243 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99137 * 179.85524 * 5 4 3 33 33 H 1.07996 * 120.18541 * 0.02571 * 8 3 2 34 34 H 0.96997 * 119.99849 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 37 37 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47562 * 89.99454 * 25 24 9 40 40 H 1.08994 * 109.46989 * 210.00284 * 25 24 9 41 41 H 1.09002 * 109.46842 * 329.99763 * 25 24 9 42 42 H 1.09005 * 109.47457 * 89.97620 * 27 26 24 43 43 H 1.09006 * 109.47203 * 209.97222 * 27 26 24 44 44 H 1.08998 * 109.47422 * 329.97004 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2864 2.3776 0.0005 5 6 1.8973 3.6119 0.0087 6 6 3.2856 3.7011 0.0038 7 6 4.0527 2.5257 0.0000 8 6 3.4266 1.2816 -0.0005 9 6 5.4611 2.9624 0.0001 10 6 6.6493 2.0987 0.0001 11 8 7.1444 1.7452 1.0537 12 7 7.1910 1.6978 -1.1672 13 6 8.3757 0.8360 -1.1672 14 1 8.3251 0.1489 -0.3225 15 6 9.6338 1.6985 -1.0483 16 6 8.4250 0.0501 -2.4520 17 1 7.6512 0.1792 -3.1942 18 6 9.4577 -0.8348 -2.6796 19 7 10.3999 -0.9924 -1.7757 20 14 9.5185 -1.8096 -4.2719 21 1 8.7896 -3.0913 -4.0958 22 1 8.8813 -1.0230 -5.3585 23 1 10.9330 -2.0893 -4.6273 24 6 5.4434 4.3262 -0.0058 25 6 6.6647 5.2090 -0.0128 26 7 4.1631 4.7679 -0.0036 27 6 3.7651 6.1777 -0.0090 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2083 2.3139 0.0005 32 1 1.2984 4.5107 0.0067 33 1 4.0163 0.3768 -0.0014 34 1 6.7960 1.9794 -2.0071 35 1 9.5980 2.2670 -0.1190 36 1 10.5152 1.0573 -1.0478 37 1 9.6844 2.3857 -1.8929 38 1 11.1262 -1.6152 -1.9357 39 1 6.9566 5.4173 -1.0421 40 1 6.4392 6.1453 0.4976 41 1 7.4818 4.7027 0.5011 42 1 3.6633 6.5227 -1.0380 43 1 2.8113 6.2880 0.5071 44 1 4.5243 6.7716 0.4999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592755088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:46 Heat of formation + Delta-G solvation = -15.184528 kcal Electronic energy + Delta-G solvation = -26309.305399 eV Core-core repulsion = 22613.612796 eV Total energy + Delta-G solvation = -3695.692603 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.50165 -39.37066 -38.31262 -36.08152 -34.62751 -33.03964 -32.13962 -30.97492 -30.31329 -28.91210 -27.42850 -26.78862 -26.09651 -25.16426 -22.44544 -22.10812 -20.94426 -20.00083 -18.96506 -17.96696 -17.41846 -16.36019 -15.96972 -15.86449 -15.56626 -15.37299 -15.14523 -15.05465 -14.23432 -13.82809 -13.80109 -13.31475 -13.21908 -13.13567 -12.84047 -12.83704 -12.58686 -12.41247 -12.30873 -12.20914 -11.74020 -11.69788 -11.51083 -11.02443 -10.90284 -10.74682 -10.62743 -10.40547 -10.24504 -10.15857 -9.47626 -8.99508 -8.95671 -8.46346 -7.86619 -7.77686 -7.35727 -6.04535 -4.12888 1.05998 1.64220 2.53415 2.67143 3.30578 3.31080 3.36874 3.39095 3.49467 3.87880 4.29781 4.48223 4.55269 4.64644 4.68465 4.85215 4.92650 5.01264 5.06101 5.10077 5.19101 5.27724 5.31460 5.37072 5.41612 5.51447 5.62354 5.70575 5.89850 5.96509 6.06387 6.25027 6.38317 6.62297 6.77171 6.91110 7.03984 7.08530 7.23698 7.24979 7.50427 7.57245 7.67702 7.79687 8.01652 8.23467 8.80858 8.89065 9.28076 9.54968 11.01536 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004052 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.368653 B = 6907.794825 C = 8620.694117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.317 6.317 3 C 0.101 3.899 4 C -0.183 4.183 5 C -0.089 4.089 6 C 0.062 3.938 7 C -0.032 4.032 8 C -0.104 4.104 9 C -0.211 4.211 10 C 0.580 3.420 11 O -0.551 6.551 12 N -0.699 5.699 13 C 0.263 3.737 14 H 0.049 0.951 15 C -0.146 4.146 16 C -0.530 4.530 17 H 0.061 0.939 18 C 0.066 3.934 19 N -0.884 5.884 20 Si 0.900 3.100 21 H -0.280 1.280 22 H -0.274 1.274 23 H -0.286 1.286 24 C 0.127 3.873 25 C -0.098 4.098 26 N -0.477 5.477 27 C 0.077 3.923 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.130 0.870 32 H 0.121 0.879 33 H 0.134 0.866 34 H 0.389 0.611 35 H 0.014 0.986 36 H 0.090 0.910 37 H 0.026 0.974 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.541 13.940 1.958 23.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.230 6.230 3 C 0.056 3.944 4 C -0.202 4.202 5 C -0.109 4.109 6 C -0.041 4.041 7 C -0.037 4.037 8 C -0.123 4.123 9 C -0.222 4.222 10 C 0.363 3.637 11 O -0.430 6.430 12 N -0.346 5.346 13 C 0.161 3.839 14 H 0.067 0.933 15 C -0.204 4.204 16 C -0.569 4.569 17 H 0.079 0.921 18 C -0.137 4.137 19 N -0.522 5.522 20 Si 0.728 3.272 21 H -0.206 1.206 22 H -0.199 1.199 23 H -0.211 1.211 24 C 0.017 3.983 25 C -0.155 4.155 26 N -0.161 5.161 27 C -0.064 4.064 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.152 0.848 34 H 0.221 0.779 35 H 0.033 0.967 36 H 0.108 0.892 37 H 0.045 0.955 38 H 0.073 0.927 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.978 13.701 2.729 22.768 hybrid contribution -0.506 -0.197 -1.263 1.374 sum -18.484 13.504 1.467 22.938 Atomic orbital electron populations 1.22985 0.79009 1.03634 1.00911 1.86110 1.20762 1.26733 1.89433 1.18562 0.91668 0.83998 1.00217 1.20819 0.99488 0.91380 1.08554 1.19676 0.90122 0.97458 1.03672 1.18050 0.91361 0.86358 1.08325 1.18453 0.91361 0.91551 1.02359 1.19659 0.91135 0.97182 1.04308 1.20030 0.92495 0.92084 1.17580 1.17221 0.81862 0.79905 0.84673 1.90758 1.63278 1.57363 1.31648 1.46540 1.31196 1.50167 1.06685 1.18756 0.79489 0.87568 0.98067 0.93338 1.22067 1.02589 0.99185 0.96592 1.21234 1.09454 1.23470 1.02720 0.92085 1.24876 0.95243 0.96590 0.96970 1.69908 1.12350 1.35906 1.34045 0.86467 0.77200 0.80331 0.83207 1.20562 1.19887 1.21145 1.20262 0.85092 0.92757 1.00195 1.20587 0.93329 0.97932 1.03691 1.43316 1.04068 1.05350 1.63352 1.21937 1.02132 0.79348 1.03030 0.92989 0.92953 0.88522 0.85266 0.86128 0.84773 0.77852 0.96668 0.89185 0.95507 0.92669 0.89759 0.91115 0.89039 0.91146 0.90169 0.89803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.41 10.49 -19.65 -0.21 -4.62 16 3 C 0.10 1.49 6.68 -39.24 -0.26 1.23 16 4 C -0.18 -2.17 9.01 -39.42 -0.36 -2.53 16 5 C -0.09 -1.04 9.91 -39.44 -0.39 -1.43 16 6 C 0.06 0.89 6.79 -83.90 -0.57 0.32 16 7 C -0.03 -0.56 6.36 -104.96 -0.67 -1.23 16 8 C -0.10 -1.80 10.03 -39.21 -0.39 -2.19 16 9 C -0.21 -3.90 6.02 -103.30 -0.62 -4.52 16 10 C 0.58 12.88 7.12 -12.76 -0.09 12.79 16 11 O -0.55 -14.43 16.77 5.22 0.09 -14.34 16 12 N -0.70 -15.67 5.07 -56.18 -0.28 -15.96 16 13 C 0.26 6.93 2.56 -69.09 -0.18 6.75 16 14 H 0.05 1.48 7.58 -51.92 -0.39 1.08 16 15 C -0.15 -3.68 9.26 37.16 0.34 -3.33 16 16 C -0.53 -14.48 8.73 -34.44 -0.30 -14.78 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.30 -17.82 -0.09 1.72 16 19 N -0.88 -25.36 11.32 55.43 0.63 -24.74 16 20 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.13 1.87 6.86 -81.67 -0.56 1.31 16 25 C -0.10 -1.15 9.82 36.00 0.35 -0.80 16 26 N -0.48 -5.98 3.15 -116.95 -0.37 -6.35 16 27 C 0.08 0.57 10.76 59.84 0.64 1.21 16 28 H 0.05 0.38 7.65 -51.93 -0.40 -0.02 16 29 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.13 1.13 6.26 -52.49 -0.33 0.80 16 32 H 0.12 1.01 8.01 -52.48 -0.42 0.59 16 33 H 0.13 2.51 8.06 -52.49 -0.42 2.08 16 34 H 0.39 7.88 8.52 -40.82 -0.35 7.53 16 35 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 0.61 6.86 -51.93 -0.36 0.25 16 41 H 0.09 1.26 7.85 -51.93 -0.41 0.85 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.47 8.02 -51.93 -0.42 0.05 16 44 H 0.08 0.49 6.82 -51.93 -0.35 0.13 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -34.54 368.78 -7.97 -42.51 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -6.21 Total: 6.04 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -2.15 Total: -4.22 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.03 Total: -47.04 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.12 Total: -18.96 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.54 -7.97 -42.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.324 kcal (2) G-P(sol) polarization free energy of solvation -34.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds