Wall clock time and date at job start Tue Mar 31 2020 11:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35971 * 117.00090 * 2 1 4 4 C 1.39186 * 119.90736 * 0.02571 * 3 2 1 5 5 C 1.37724 * 120.57599 * 179.60630 * 4 3 2 6 6 C 1.39122 * 120.00655 * 0.60146 * 5 4 3 7 7 C 1.40364 * 119.45284 * 359.55927 * 6 5 4 8 8 C 1.38209 * 119.90706 * 180.02562 * 3 2 1 9 9 C 1.47454 * 105.90242 * 180.18929 * 7 6 5 10 10 C 1.46893 * 126.76062 * 179.84013 * 9 7 6 11 11 O 1.21667 * 119.99730 * 269.71266 * 10 9 7 12 12 N 1.34779 * 119.99862 * 89.71231 * 10 9 7 13 13 C 1.46497 * 119.99943 * 180.02562 * 12 10 9 14 14 H 1.09007 * 109.47078 * 34.99474 * 13 12 10 15 15 C 1.53000 * 109.47021 * 275.00054 * 13 12 10 16 16 C 1.50694 * 109.47115 * 154.99835 * 13 12 10 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 13 12 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 13 12 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 13 21 21 H 1.48500 * 109.47353 * 269.99586 * 20 18 16 22 22 H 1.48501 * 109.47293 * 30.00037 * 20 18 16 23 23 H 1.48504 * 109.46680 * 149.99835 * 20 18 16 24 24 C 1.36400 * 106.47972 * 359.57785 * 9 7 6 25 25 C 1.50699 * 125.11191 * 180.22947 * 24 9 7 26 26 N 1.35431 * 109.77842 * 0.26446 * 24 9 7 27 27 C 1.46495 * 124.79571 * 180.02562 * 26 24 9 28 28 H 1.08997 * 109.47121 * 299.99763 * 1 2 3 29 29 H 1.08999 * 109.47517 * 59.99525 * 1 2 3 30 30 H 1.09003 * 109.47433 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.71243 * 359.97438 * 4 3 2 32 32 H 1.08003 * 119.99137 * 179.85524 * 5 4 3 33 33 H 1.07996 * 120.18541 * 0.02571 * 8 3 2 34 34 H 0.96997 * 119.99849 * 359.97438 * 12 10 9 35 35 H 1.08998 * 109.47089 * 59.99825 * 15 13 12 36 36 H 1.08995 * 109.47131 * 179.97438 * 15 13 12 37 37 H 1.09002 * 109.47106 * 299.99878 * 15 13 12 38 38 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 39 39 H 1.08996 * 109.47562 * 89.99454 * 25 24 9 40 40 H 1.08994 * 109.46989 * 210.00284 * 25 24 9 41 41 H 1.09002 * 109.46842 * 329.99763 * 25 24 9 42 42 H 1.09005 * 109.47457 * 89.97620 * 27 26 24 43 43 H 1.09006 * 109.47203 * 209.97222 * 27 26 24 44 44 H 1.08998 * 109.47422 * 329.97004 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2115 0.0000 4 6 1.2864 2.3776 0.0005 5 6 1.8973 3.6119 0.0087 6 6 3.2856 3.7011 0.0038 7 6 4.0527 2.5257 0.0000 8 6 3.4266 1.2816 -0.0005 9 6 5.4611 2.9624 0.0001 10 6 6.6493 2.0987 0.0001 11 8 7.1444 1.7452 1.0537 12 7 7.1910 1.6978 -1.1672 13 6 8.3757 0.8360 -1.1672 14 1 8.3251 0.1489 -0.3225 15 6 9.6338 1.6985 -1.0483 16 6 8.4250 0.0501 -2.4520 17 1 7.6512 0.1792 -3.1942 18 6 9.4577 -0.8348 -2.6796 19 7 10.3999 -0.9924 -1.7757 20 14 9.5185 -1.8096 -4.2719 21 1 8.7896 -3.0913 -4.0958 22 1 8.8813 -1.0230 -5.3585 23 1 10.9330 -2.0893 -4.6273 24 6 5.4434 4.3262 -0.0058 25 6 6.6647 5.2090 -0.0128 26 7 4.1631 4.7679 -0.0036 27 6 3.7651 6.1777 -0.0090 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2083 2.3139 0.0005 32 1 1.2984 4.5107 0.0067 33 1 4.0163 0.3768 -0.0014 34 1 6.7960 1.9794 -2.0071 35 1 9.5980 2.2670 -0.1190 36 1 10.5152 1.0573 -1.0478 37 1 9.6844 2.3857 -1.8929 38 1 11.1262 -1.6152 -1.9357 39 1 6.9566 5.4173 -1.0421 40 1 6.4392 6.1453 0.4976 41 1 7.4818 4.7027 0.5011 42 1 3.6633 6.5227 -1.0380 43 1 2.8113 6.2880 0.5071 44 1 4.5243 6.7716 0.4999 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592755088.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:46 Heat of formation + Delta-G solvation = -38.686228 kcal Electronic energy + Delta-G solvation = -26310.324509 eV Core-core repulsion = 22613.612796 eV Total energy + Delta-G solvation = -3696.711713 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58914 -40.46778 -40.04087 -37.08526 -36.66959 -34.41532 -33.91055 -31.97042 -31.31819 -30.82440 -28.19878 -27.80182 -27.37525 -27.12054 -23.95036 -23.14777 -22.34056 -21.55334 -20.54278 -19.20754 -18.63809 -17.94371 -17.27594 -17.13649 -16.78746 -16.63848 -16.39322 -16.27023 -15.92044 -15.37988 -15.03650 -14.62742 -14.44632 -14.23472 -14.01139 -13.95517 -13.76741 -13.69638 -13.55237 -13.20102 -13.07652 -13.00495 -12.88063 -12.77769 -12.54914 -12.50698 -12.26458 -12.14053 -11.74047 -11.31707 -11.12512 -10.87462 -10.60505 -10.55520 -9.76412 -8.93677 -8.47646 -8.17640 -6.35456 -0.01500 0.56631 1.35841 1.43187 1.44839 1.55416 1.66909 1.79437 2.37735 2.42725 2.73561 2.83898 3.12059 3.61262 3.64655 3.87421 3.96739 4.15189 4.21645 4.33800 4.42254 4.46438 4.47868 4.51680 4.58986 4.65140 4.72108 4.75543 4.77059 4.78436 4.92730 4.94919 5.04874 5.08607 5.20921 5.30739 5.43296 5.54770 5.58334 5.61102 5.69653 5.91286 6.01837 6.09741 6.30599 6.53821 6.71025 6.96641 7.31056 7.54147 8.88772 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004052 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.368653 B = 6907.794825 C = 8620.694117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.347 6.347 3 C 0.106 3.894 4 C -0.179 4.179 5 C -0.065 4.065 6 C 0.052 3.948 7 C -0.058 4.058 8 C -0.157 4.157 9 C -0.274 4.274 10 C 0.586 3.414 11 O -0.604 6.604 12 N -0.694 5.694 13 C 0.269 3.731 14 H -0.007 1.007 15 C -0.129 4.129 16 C -0.548 4.548 17 H 0.068 0.932 18 C 0.016 3.984 19 N -0.916 5.916 20 Si 0.973 3.027 21 H -0.279 1.279 22 H -0.261 1.261 23 H -0.278 1.278 24 C 0.153 3.847 25 C -0.098 4.098 26 N -0.463 5.463 27 C 0.064 3.936 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.171 0.829 32 H 0.171 0.829 33 H 0.091 0.909 34 H 0.401 0.599 35 H 0.013 0.987 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.266 0.734 39 H 0.102 0.898 40 H 0.112 0.888 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.104 0.896 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.933 17.299 0.398 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.261 6.261 3 C 0.061 3.939 4 C -0.198 4.198 5 C -0.084 4.084 6 C -0.052 4.052 7 C -0.063 4.063 8 C -0.177 4.177 9 C -0.285 4.285 10 C 0.373 3.627 11 O -0.487 6.487 12 N -0.341 5.341 13 C 0.165 3.835 14 H 0.011 0.989 15 C -0.188 4.188 16 C -0.586 4.586 17 H 0.086 0.914 18 C -0.184 4.184 19 N -0.554 5.554 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.185 1.185 23 H -0.204 1.204 24 C 0.039 3.961 25 C -0.155 4.155 26 N -0.145 5.145 27 C -0.075 4.075 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.130 0.870 31 H 0.188 0.812 32 H 0.188 0.812 33 H 0.110 0.890 34 H 0.235 0.765 35 H 0.033 0.967 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.076 0.924 39 H 0.120 0.880 40 H 0.130 0.870 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.123 0.877 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -21.432 17.105 1.148 27.445 hybrid contribution 0.416 -1.220 -0.714 1.473 sum -21.017 15.885 0.434 26.348 Atomic orbital electron populations 1.23365 0.76126 1.05429 1.02663 1.86080 1.23845 1.26996 1.89193 1.18702 0.90865 0.85521 0.98838 1.21239 1.01230 0.90107 1.07240 1.20225 0.89042 0.99120 1.00062 1.18291 0.92412 0.85582 1.08888 1.18607 0.91348 0.92933 1.03437 1.19548 0.92711 0.96151 1.09284 1.19699 0.91404 0.93545 1.23834 1.17787 0.82326 0.79218 0.83397 1.90697 1.65207 1.59448 1.33326 1.46333 1.30388 1.49669 1.07674 1.18411 0.81481 0.87650 0.95924 0.98892 1.21852 1.01020 0.98695 0.97227 1.21504 1.09956 1.24225 1.02935 0.91411 1.25798 0.94646 0.97419 1.00539 1.70056 1.12898 1.36450 1.36030 0.85331 0.77469 0.78500 0.78949 1.20527 1.18458 1.20377 1.20538 0.87077 0.91622 0.96899 1.20703 0.91102 0.98679 1.04993 1.43610 1.02712 1.07183 1.60994 1.22446 1.04018 0.75922 1.05123 0.91115 0.91061 0.87009 0.81169 0.81207 0.89042 0.76512 0.96742 0.91325 0.93706 0.92443 0.87967 0.86998 0.91830 0.89057 0.87727 0.87807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.35 -9.78 10.49 -93.22 -0.98 -10.76 16 3 C 0.11 3.17 6.68 22.49 0.15 3.32 16 4 C -0.18 -3.66 9.01 22.38 0.20 -3.46 16 5 C -0.06 -1.23 9.91 22.36 0.22 -1.01 16 6 C 0.05 1.38 6.79 38.88 0.26 1.65 16 7 C -0.06 -2.14 6.36 -20.08 -0.13 -2.26 16 8 C -0.16 -5.98 10.03 22.51 0.23 -5.75 16 9 C -0.27 -10.70 6.02 -19.01 -0.11 -10.82 16 10 C 0.59 28.39 7.12 86.51 0.62 29.00 16 11 O -0.60 -34.81 16.77 -4.25 -0.07 -34.88 16 12 N -0.69 -33.49 5.07 -449.88 -2.28 -35.77 16 13 C 0.27 15.17 2.56 44.24 0.11 15.28 16 14 H -0.01 -0.46 7.58 -2.38 -0.02 -0.47 16 15 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 16 C -0.55 -31.14 8.73 25.60 0.22 -30.91 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 18 C 0.02 0.91 5.30 84.66 0.45 1.35 16 19 N -0.92 -54.59 11.32 21.45 0.24 -54.35 16 20 Si 0.97 43.99 29.54 68.60 2.03 46.02 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 23 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 24 C 0.15 4.38 6.86 41.57 0.29 4.66 16 25 C -0.10 -2.13 9.82 71.24 0.70 -1.43 16 26 N -0.46 -10.21 3.15 -523.91 -1.65 -11.86 16 27 C 0.06 0.59 10.76 127.77 1.37 1.97 16 28 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 29 H 0.07 0.82 7.65 -2.39 -0.02 0.80 16 30 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.17 2.05 6.26 -2.91 -0.02 2.03 16 32 H 0.17 1.60 8.01 -2.91 -0.02 1.58 16 33 H 0.09 4.04 8.06 -2.91 -0.02 4.02 16 34 H 0.40 17.24 8.52 -92.71 -0.79 16.45 16 35 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.07 3.95 6.07 -2.39 -0.01 3.93 16 37 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 39 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.11 1.48 6.86 -2.39 -0.02 1.47 16 41 H 0.06 1.78 7.85 -2.39 -0.02 1.76 16 42 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 43 H 0.10 0.53 8.02 -2.38 -0.02 0.51 16 44 H 0.10 0.60 6.82 -2.39 -0.02 0.59 16 Total: -1.00 -84.72 368.78 3.89 -80.83 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: 0.24 Total: 24.01 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 6.36 Total: -3.24 kcal Atomic # 7 Polarization: -98.29 SS G_CDS: -3.68 Total: -101.98 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -1.05 Total: -45.64 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -84.72 3.89 -80.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592755088.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.141 kcal (2) G-P(sol) polarization free energy of solvation -84.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds