Wall clock time and date at job start Tue Mar 31 2020 10:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54122 * 291.62548 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 N 1.65600 * 104.45074 * 180.02562 * 11 10 9 15 15 C 1.46503 * 120.00062 * 64.99734 * 14 11 10 16 16 H 1.08998 * 109.40877 * 25.00058 * 15 14 11 17 17 C 1.52940 * 109.40942 * 265.15593 * 15 14 11 18 18 C 1.53213 * 108.69741 * 181.72959 * 17 15 14 19 19 C 1.52836 * 108.76418 * 58.82705 * 18 17 15 20 20 N 1.47151 * 110.11589 * 300.14812 * 19 18 17 21 21 C 1.47154 * 109.27359 * 184.36316 * 20 19 18 22 22 C 1.52837 * 110.11474 * 175.65376 * 21 20 19 23 23 C 1.53227 * 108.82305 * 59.81894 * 22 21 20 24 24 C 1.52931 * 108.68806 * 301.26933 * 23 22 21 25 25 C 1.46696 * 111.52457 * 60.59460 * 20 19 18 26 26 H 1.09003 * 109.63058 * 61.22458 * 25 20 19 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 0.96993 * 120.00181 * 245.00479 * 14 11 10 33 33 H 1.09001 * 109.60124 * 301.56973 * 17 15 14 34 34 H 1.09008 * 109.59995 * 62.04076 * 17 15 14 35 35 H 1.08999 * 109.63783 * 299.02859 * 18 17 15 36 36 H 1.08997 * 109.68839 * 178.65799 * 18 17 15 37 37 H 1.09002 * 109.36266 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.25851 * 60.27911 * 19 18 17 39 39 H 1.08996 * 109.36559 * 55.45567 * 21 20 19 40 40 H 1.09000 * 109.25417 * 295.78404 * 21 20 19 41 41 H 1.09001 * 109.58379 * 300.01678 * 22 21 20 42 42 H 1.09001 * 109.68742 * 179.67915 * 22 21 20 43 43 H 1.09002 * 109.59645 * 181.51155 * 23 22 21 44 44 H 1.08999 * 109.60285 * 61.03225 * 23 22 21 45 45 H 1.09005 * 109.41215 * 297.97059 * 24 23 22 46 46 H 1.08999 * 109.34718 * 178.16044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.6640 -5.4201 1.2365 13 8 0.6648 -5.4194 -1.2375 14 7 2.5205 -6.3927 0.0006 15 6 3.4181 -6.5230 1.1510 16 1 2.9258 -6.1307 2.0408 17 6 4.6995 -5.7304 0.8882 18 6 5.6433 -5.9130 2.0813 19 6 5.9405 -7.4027 2.2497 20 7 4.6920 -8.1438 2.4891 21 6 5.0087 -9.5566 2.7522 22 6 3.7356 -10.3229 3.1098 23 6 2.7540 -10.2252 1.9373 24 6 2.4552 -8.7494 1.6699 25 6 3.7579 -8.0014 1.3671 26 1 4.2087 -8.4074 0.4615 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 2.6188 -6.9857 -0.7607 33 1 5.1786 -6.1001 -0.0184 34 1 4.4586 -4.6737 0.7723 35 1 5.1692 -5.5307 2.9852 36 1 6.5728 -5.3733 1.9001 37 1 6.6122 -7.5437 3.0964 38 1 6.4161 -7.7790 1.3440 39 1 5.7138 -9.6207 3.5809 40 1 5.4571 -9.9964 1.8614 41 1 3.2846 -9.8864 4.0010 42 1 3.9771 -11.3690 3.2976 43 1 1.8300 -10.7454 2.1898 44 1 3.1988 -10.6749 1.0496 45 1 1.9816 -8.3107 2.5482 46 1 1.7828 -8.6660 0.8161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594482942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:45 Heat of formation + Delta-G solvation = -94.495862 kcal Electronic energy + Delta-G solvation = -25928.829079 eV Core-core repulsion = 22365.141230 eV Total energy + Delta-G solvation = -3563.687849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.22225 -36.63041 -36.19608 -35.42577 -34.73491 -33.89283 -31.47477 -31.15702 -30.68825 -27.93636 -25.61439 -23.72988 -23.53550 -22.49782 -21.62295 -20.26816 -19.87795 -18.84502 -17.48083 -16.82797 -16.34543 -15.67197 -15.39111 -15.28995 -14.85279 -14.67127 -14.54115 -14.36997 -14.24097 -13.77692 -13.48834 -13.32955 -13.15441 -12.53289 -12.34260 -12.03686 -11.85102 -11.76362 -11.59536 -11.56266 -11.48791 -11.30814 -11.16181 -11.07429 -10.99499 -10.91412 -10.80005 -10.55915 -10.40572 -10.38288 -10.18555 -9.76472 -9.40233 -9.01161 -8.55129 -8.49696 -6.11741 -4.17250 0.80856 3.08324 3.26382 3.32691 3.35265 3.66683 4.25381 4.38115 4.42187 4.48047 4.65388 4.72679 4.77060 4.84486 4.94919 5.00039 5.05832 5.17839 5.23343 5.24087 5.31277 5.40294 5.50234 5.53287 5.57701 5.59338 5.65489 5.72032 5.76083 5.78872 5.84467 5.91594 5.96600 6.02478 6.12632 6.22585 6.30973 6.51785 6.84050 6.90926 7.12526 7.31024 7.37337 7.81124 8.18210 8.86066 9.47449 10.99331 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.003576 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.087878 B = 7828.369253 C = 8761.448543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.519 4.519 8 H 0.061 0.939 9 C 0.028 3.972 10 C -0.591 4.591 11 S 2.592 3.408 12 O -0.964 6.964 13 O -0.969 6.969 14 N -1.122 6.122 15 C 0.156 3.844 16 H 0.102 0.898 17 C -0.150 4.150 18 C -0.117 4.117 19 C 0.052 3.948 20 N -0.526 5.526 21 C 0.056 3.944 22 C -0.119 4.119 23 C -0.122 4.122 24 C -0.117 4.117 25 C 0.090 3.910 26 H 0.045 0.955 27 H 0.265 0.735 28 H 0.033 0.967 29 H 0.034 0.966 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.032 0.968 39 H 0.075 0.925 40 H 0.031 0.969 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.078 0.922 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.560 -19.693 4.183 23.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.011 4.011 10 C -0.724 4.724 11 S 2.689 3.311 12 O -0.953 6.953 13 O -0.959 6.959 14 N -0.877 5.877 15 C 0.048 3.952 16 H 0.120 0.880 17 C -0.189 4.189 18 C -0.156 4.156 19 C -0.076 4.076 20 N -0.252 5.252 21 C -0.072 4.072 22 C -0.156 4.156 23 C -0.160 4.160 24 C -0.155 4.155 25 C -0.020 4.020 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.051 0.949 29 H 0.052 0.948 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.243 0.757 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.051 0.949 39 H 0.093 0.907 40 H 0.049 0.951 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.181 -19.478 4.763 22.958 hybrid contribution 1.566 0.669 -1.155 2.057 sum 12.747 -18.809 3.608 23.006 Atomic orbital electron populations 1.69952 1.06113 1.27185 1.49588 1.25066 0.94962 0.99523 0.94931 0.86478 0.79726 0.82917 0.78207 1.20505 1.21014 1.19749 1.20995 0.93035 0.89757 1.52099 0.92052 1.18961 0.92685 0.90571 0.98871 1.30551 1.13688 1.18131 1.10021 1.05587 0.74672 0.76668 0.74174 1.93548 1.71277 1.84921 1.45600 1.93552 1.71676 1.85386 1.45279 1.55868 1.52685 1.52081 1.27087 1.20805 0.90365 0.95287 0.88784 0.87982 1.22322 0.96079 1.01709 0.98836 1.21559 0.99756 0.95160 0.99093 1.22167 0.90952 0.94398 1.00080 1.62191 1.12447 1.10286 1.40267 1.22091 0.97506 0.87574 0.99992 1.21601 0.95553 0.99318 0.99177 1.21603 0.99456 0.96790 0.98158 1.21684 0.96151 0.94485 1.03131 1.21750 0.93591 0.94764 0.91912 0.93729 0.92535 0.94909 0.94797 0.86112 0.86154 0.75679 0.91326 0.90140 0.90398 0.90819 0.90553 0.94950 0.90670 0.95114 0.90806 0.91650 0.91579 0.92437 0.90374 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.29 55.43 0.74 -25.74 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.52 -14.27 9.11 -34.44 -0.31 -14.58 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 10 C -0.59 -11.16 5.20 37.16 0.19 -10.97 16 11 S 2.59 46.13 5.44 -107.50 -0.58 45.54 16 12 O -0.96 -19.90 17.39 -57.54 -1.00 -20.90 16 13 O -0.97 -20.10 18.08 -57.54 -1.04 -21.14 16 14 N -1.12 -14.40 4.59 -4.81 -0.02 -14.42 16 15 C 0.16 1.86 2.20 -67.84 -0.15 1.71 16 16 H 0.10 1.39 7.47 -51.93 -0.39 1.00 16 17 C -0.15 -1.59 5.56 -26.65 -0.15 -1.74 16 18 C -0.12 -1.09 6.11 -26.71 -0.16 -1.25 16 19 C 0.05 0.45 5.33 -3.77 -0.02 0.43 16 20 N -0.53 -5.17 4.71 -226.30 -1.07 -6.23 16 21 C 0.06 0.46 5.33 -3.77 -0.02 0.44 16 22 C -0.12 -0.95 6.11 -26.70 -0.16 -1.11 16 23 C -0.12 -1.08 6.02 -26.65 -0.16 -1.24 16 24 C -0.12 -1.28 5.09 -26.65 -0.14 -1.41 16 25 C 0.09 0.95 1.88 -67.59 -0.13 0.82 16 26 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.03 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.12 2.05 8.14 -51.92 -0.42 1.62 16 31 H 0.12 2.04 6.73 -51.92 -0.35 1.69 16 32 H 0.41 4.39 8.80 -34.47 -0.30 4.09 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.91 5.80 -51.92 -0.30 0.61 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.54 8.03 -51.93 -0.42 0.12 16 40 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.07 0.80 7.61 -51.93 -0.40 0.41 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -33.91 365.20 -11.97 -45.88 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -8.03 Total: 2.19 kcal Atomic # 6 Polarization: -25.36 SS G_CDS: -1.44 Total: -26.80 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.35 Total: -46.40 kcal Atomic # 8 Polarization: -40.00 SS G_CDS: -2.04 Total: -42.04 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 46.13 SS G_CDS: -0.58 Total: 45.54 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.91 -11.97 -45.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594482942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.621 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds