Wall clock time and date at job start Tue Mar 31 2020 10:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 S 1.81404 * 109.46946 * 180.02562 * 10 9 7 12 12 O 1.42098 * 110.54122 * 291.62548 * 11 10 9 13 13 O 1.42102 * 110.54223 * 68.37613 * 11 10 9 14 14 N 1.65600 * 104.45074 * 180.02562 * 11 10 9 15 15 C 1.46503 * 120.00062 * 64.99734 * 14 11 10 16 16 H 1.08998 * 109.40877 * 25.00058 * 15 14 11 17 17 C 1.52940 * 109.40942 * 265.15593 * 15 14 11 18 18 C 1.53213 * 108.69741 * 181.72959 * 17 15 14 19 19 C 1.52836 * 108.76418 * 58.82705 * 18 17 15 20 20 N 1.47151 * 110.11589 * 300.14812 * 19 18 17 21 21 C 1.47154 * 109.27359 * 184.36316 * 20 19 18 22 22 C 1.52837 * 110.11474 * 175.65376 * 21 20 19 23 23 C 1.53227 * 108.82305 * 59.81894 * 22 21 20 24 24 C 1.52931 * 108.68806 * 301.26933 * 23 22 21 25 25 C 1.46696 * 111.52457 * 60.59460 * 20 19 18 26 26 H 1.09003 * 109.63058 * 61.22458 * 25 20 19 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 29 29 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 30 30 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 31 31 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 32 32 H 0.96993 * 120.00181 * 245.00479 * 14 11 10 33 33 H 1.09001 * 109.60124 * 301.56973 * 17 15 14 34 34 H 1.09008 * 109.59995 * 62.04076 * 17 15 14 35 35 H 1.08999 * 109.63783 * 299.02859 * 18 17 15 36 36 H 1.08997 * 109.68839 * 178.65799 * 18 17 15 37 37 H 1.09002 * 109.36266 * 179.97438 * 19 18 17 38 38 H 1.09005 * 109.25851 * 60.27911 * 19 18 17 39 39 H 1.08996 * 109.36559 * 55.45567 * 21 20 19 40 40 H 1.09000 * 109.25417 * 295.78404 * 21 20 19 41 41 H 1.09001 * 109.58379 * 300.01678 * 22 21 20 42 42 H 1.09001 * 109.68742 * 179.67915 * 22 21 20 43 43 H 1.09002 * 109.59645 * 181.51155 * 23 22 21 44 44 H 1.08999 * 109.60285 * 61.03225 * 23 22 21 45 45 H 1.09005 * 109.41215 * 297.97059 * 24 23 22 46 46 H 1.08999 * 109.34718 * 178.16044 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 16 1.3384 -5.2331 -0.0002 12 8 0.6640 -5.4201 1.2365 13 8 0.6648 -5.4194 -1.2375 14 7 2.5205 -6.3927 0.0006 15 6 3.4181 -6.5230 1.1510 16 1 2.9258 -6.1307 2.0408 17 6 4.6995 -5.7304 0.8882 18 6 5.6433 -5.9130 2.0813 19 6 5.9405 -7.4027 2.2497 20 7 4.6920 -8.1438 2.4891 21 6 5.0087 -9.5566 2.7522 22 6 3.7356 -10.3229 3.1098 23 6 2.7540 -10.2252 1.9373 24 6 2.4552 -8.7494 1.6699 25 6 3.7579 -8.0014 1.3671 26 1 4.2087 -8.4074 0.4615 27 1 -0.4850 0.8400 -0.0004 28 1 0.6247 -2.5571 -0.8897 29 1 0.6241 -2.5568 0.8902 30 1 2.8720 -3.6043 -0.8894 31 1 2.8720 -3.6043 0.8905 32 1 2.6188 -6.9857 -0.7607 33 1 5.1786 -6.1001 -0.0184 34 1 4.4586 -4.6737 0.7723 35 1 5.1692 -5.5307 2.9852 36 1 6.5728 -5.3733 1.9001 37 1 6.6122 -7.5437 3.0964 38 1 6.4161 -7.7790 1.3440 39 1 5.7138 -9.6207 3.5809 40 1 5.4571 -9.9964 1.8614 41 1 3.2846 -9.8864 4.0010 42 1 3.9771 -11.3690 3.2976 43 1 1.8300 -10.7454 2.1898 44 1 3.1988 -10.6749 1.0496 45 1 1.9816 -8.3107 2.5482 46 1 1.7828 -8.6660 0.8161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594482942.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:45 Heat of formation + Delta-G solvation = -119.765453 kcal Electronic energy + Delta-G solvation = -25929.924851 eV Core-core repulsion = 22365.141230 eV Total energy + Delta-G solvation = -3564.783621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.01277 -38.17815 -37.13171 -36.99547 -35.90376 -35.57730 -33.15436 -32.26611 -31.49444 -28.76877 -27.59459 -24.49551 -24.38180 -23.46900 -23.29954 -21.16036 -20.62423 -20.20595 -19.09662 -18.30098 -17.69689 -17.06628 -16.63360 -16.53300 -16.23778 -15.77334 -15.59263 -15.23797 -15.12470 -14.92131 -14.58881 -14.44220 -14.20403 -14.00839 -13.72802 -13.26337 -13.23156 -13.14813 -12.92909 -12.81921 -12.77695 -12.71625 -12.55556 -12.26098 -12.13350 -12.02235 -11.94489 -11.82617 -11.67843 -11.53416 -11.32893 -11.12678 -10.98072 -10.63952 -10.27022 -9.24548 -8.25200 -6.39139 -0.69219 1.41472 1.43344 1.54448 1.79292 2.38630 2.78519 2.92711 3.08388 3.26839 3.56158 3.71610 3.90559 3.97008 4.05293 4.05888 4.14286 4.21810 4.24840 4.25969 4.42082 4.47257 4.57946 4.70930 4.73019 4.77328 4.83099 4.84316 4.89490 5.01106 5.06171 5.07318 5.16210 5.19597 5.26653 5.27976 5.29125 5.36890 5.42925 5.52167 5.69194 6.06110 6.08620 6.18101 6.22555 6.74500 7.31020 8.87210 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020522 B = 0.003576 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.087878 B = 7828.369253 C = 8761.448543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.974 3.026 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.021 3.979 10 C -0.587 4.587 11 S 2.617 3.383 12 O -0.995 6.995 13 O -0.999 6.999 14 N -1.100 6.100 15 C 0.150 3.850 16 H 0.081 0.919 17 C -0.151 4.151 18 C -0.117 4.117 19 C 0.053 3.947 20 N -0.541 5.541 21 C 0.056 3.944 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.121 4.121 25 C 0.096 3.904 26 H 0.057 0.943 27 H 0.267 0.733 28 H 0.005 0.995 29 H 0.006 0.994 30 H 0.145 0.855 31 H 0.141 0.859 32 H 0.424 0.576 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.042 0.958 39 H 0.088 0.912 40 H 0.039 0.961 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.068 0.932 45 H 0.054 0.946 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.747 -20.580 4.101 26.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.576 4.576 8 H 0.095 0.905 9 C -0.018 4.018 10 C -0.719 4.719 11 S 2.714 3.286 12 O -0.985 6.985 13 O -0.989 6.989 14 N -0.861 5.861 15 C 0.042 3.958 16 H 0.099 0.901 17 C -0.190 4.190 18 C -0.155 4.155 19 C -0.075 4.075 20 N -0.267 5.267 21 C -0.072 4.072 22 C -0.155 4.155 23 C -0.157 4.157 24 C -0.159 4.159 25 C -0.014 4.014 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.024 0.976 29 H 0.024 0.976 30 H 0.163 0.837 31 H 0.159 0.841 32 H 0.261 0.739 33 H 0.103 0.897 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.057 0.943 41 H 0.079 0.921 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.073 0.927 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 14.384 -20.377 4.675 25.377 hybrid contribution 0.569 0.860 -1.095 1.504 sum 14.953 -19.517 3.580 24.846 Atomic orbital electron populations 1.70104 1.08109 1.28302 1.50948 1.26122 0.95840 1.03899 0.94417 0.85314 0.78696 0.77650 0.78608 1.19634 1.20946 1.18006 1.21509 0.94010 0.90664 1.51391 0.90468 1.18820 0.93581 0.93128 0.96286 1.30441 1.12720 1.16421 1.12291 1.04520 0.74703 0.76626 0.72749 1.93508 1.72646 1.85392 1.46954 1.93504 1.73085 1.85863 1.46447 1.55313 1.51965 1.50649 1.28142 1.20977 0.90495 0.96967 0.87328 0.90060 1.22336 0.95515 1.00863 1.00272 1.21578 0.99969 0.96103 0.97852 1.22206 0.90561 0.93559 1.01143 1.62187 1.13045 1.11616 1.39890 1.22158 0.97694 0.86508 1.00797 1.21601 0.95271 1.00439 0.98154 1.21592 1.00003 0.95079 0.99053 1.21701 0.96314 0.96200 1.01716 1.21640 0.93690 0.93216 0.92857 0.92504 0.92424 0.97623 0.97594 0.83715 0.84077 0.73932 0.89710 0.90980 0.91613 0.89134 0.89190 0.93999 0.89411 0.94304 0.92067 0.89709 0.91421 0.91361 0.92728 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 43.19 29.54 68.60 2.03 45.22 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 7 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 8 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 9 C 0.02 1.09 4.98 29.85 0.15 1.24 16 10 C -0.59 -22.14 5.20 71.98 0.37 -21.77 16 11 S 2.62 94.63 5.44 -56.49 -0.31 94.33 16 12 O -1.00 -42.57 17.39 -127.65 -2.22 -44.79 16 13 O -1.00 -42.14 18.08 -127.65 -2.31 -44.45 16 14 N -1.10 -27.38 4.59 -169.15 -0.78 -28.16 16 15 C 0.15 3.43 2.20 45.05 0.10 3.53 16 16 H 0.08 2.23 7.47 -2.39 -0.02 2.21 16 17 C -0.15 -2.87 5.56 30.65 0.17 -2.70 16 18 C -0.12 -1.89 6.11 30.61 0.19 -1.71 16 19 C 0.05 0.75 5.33 86.20 0.46 1.21 16 20 N -0.54 -9.50 4.71 -869.89 -4.10 -13.60 16 21 C 0.06 0.76 5.33 86.20 0.46 1.22 16 22 C -0.12 -1.64 6.11 30.62 0.19 -1.45 16 23 C -0.12 -1.93 6.02 30.65 0.18 -1.74 16 24 C -0.12 -2.60 5.09 30.65 0.16 -2.44 16 25 C 0.10 1.88 1.88 45.11 0.08 1.96 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 28 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 29 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.14 4.72 8.14 -2.39 -0.02 4.70 16 31 H 0.14 4.69 6.73 -2.39 -0.02 4.68 16 32 H 0.42 8.46 8.80 -96.75 -0.85 7.61 16 33 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.07 1.49 5.80 -2.38 -0.01 1.48 16 35 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.07 8.03 -2.39 -0.02 1.05 16 38 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 39 H 0.09 0.99 8.03 -2.39 -0.02 0.97 16 40 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 43 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 45 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 46 H 0.06 1.41 7.61 -2.39 -0.02 1.39 16 Total: -1.00 -74.67 365.20 -4.09 -78.76 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.10 Total: 21.41 kcal Atomic # 6 Polarization: -55.06 SS G_CDS: 3.20 Total: -51.86 kcal Atomic # 7 Polarization: -94.03 SS G_CDS: -4.59 Total: -98.62 kcal Atomic # 8 Polarization: -84.71 SS G_CDS: -4.53 Total: -89.24 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 94.63 SS G_CDS: -0.31 Total: 94.33 kcal Total: -74.67 -4.09 -78.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594482942.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.008 kcal (2) G-P(sol) polarization free energy of solvation -74.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds