Wall clock time and date at job start Tue Mar 31 2020 10:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47029 * 240.00248 * 3 2 1 5 5 H 1.48496 * 109.46703 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46833 * 120.00228 * 3 2 1 7 7 C 1.37886 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.35979 * 117.00458 * 180.02562 * 11 10 9 13 13 C 1.38801 * 120.49270 * 0.25597 * 12 11 10 14 14 C 1.38778 * 118.44438 * 180.26740 * 13 12 11 15 15 C 1.38091 * 119.35545 * 359.47538 * 14 13 12 16 16 N 1.31952 * 120.95050 * 0.28060 * 15 14 13 17 17 C 1.32274 * 121.69518 * 359.97438 * 16 15 14 18 18 N 1.39582 * 119.72874 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99721 * 0.02562 * 18 17 16 20 20 O 1.21282 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.53892 * 113.58940 * 279.21044 * 21 19 18 23 23 C 1.53414 * 86.82874 * 220.46064 * 22 21 19 24 24 C 1.52461 * 128.60797 * 165.09816 * 23 22 21 25 25 C 1.52468 * 128.51709 * 245.01569 * 23 22 21 26 26 C 1.53256 * 87.72096 * 25.01496 * 23 22 21 27 27 H 0.97005 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47571 * 59.99978 * 9 7 2 29 29 H 1.09006 * 109.47158 * 299.99779 * 9 7 2 30 30 H 1.09000 * 109.47219 * 59.99900 * 10 9 7 31 31 H 1.08997 * 109.47554 * 299.99977 * 10 9 7 32 32 H 1.08001 * 120.78163 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.32573 * 179.76062 * 14 13 12 34 34 H 1.07999 * 119.52733 * 180.25942 * 15 14 13 35 35 H 0.97002 * 120.00131 * 180.02562 * 18 17 16 36 36 H 1.09001 * 112.83380 * 50.33049 * 21 19 18 37 37 H 1.09004 * 113.64058 * 334.93308 * 22 21 19 38 38 H 1.08999 * 113.64414 * 105.93147 * 22 21 19 39 39 H 1.08996 * 117.51626 * 224.95628 * 24 23 22 40 40 H 1.09006 * 117.51176 * 10.06655 * 24 23 22 41 41 H 1.08995 * 117.51287 * 349.80056 * 25 23 22 42 42 H 1.09003 * 117.50942 * 134.86554 * 25 23 22 43 43 H 1.08999 * 113.64621 * 220.48406 * 26 23 22 44 44 H 1.09000 * 113.72476 * 89.49631 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5307 -4.8996 -0.0032 12 6 2.2712 -6.0401 -0.0036 13 6 3.6579 -5.9795 0.0018 14 6 4.3716 -7.1696 -0.0045 15 6 3.6875 -8.3692 -0.0050 16 7 2.3683 -8.3981 -0.0049 17 6 1.6488 -7.2881 -0.0041 18 7 0.2552 -7.3666 -0.0046 19 6 -0.3519 -8.5699 -0.0056 20 8 0.3126 -9.5844 -0.0064 21 6 -1.8565 -8.6545 -0.0068 22 6 -2.4852 -8.4643 1.3849 23 6 -3.4573 -9.5889 1.0057 24 6 -4.3776 -10.3973 1.9135 25 6 -4.9677 -9.5130 0.8113 26 6 -2.3922 -10.0968 0.0279 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8718 -3.6052 0.8873 31 1 2.8718 -3.6037 -0.8926 32 1 4.1695 -5.0283 0.0068 33 1 5.4515 -7.1579 -0.0045 34 1 4.2402 -9.2971 -0.0056 35 1 -0.2762 -6.5551 -0.0044 36 1 -2.3143 -8.0377 -0.7802 37 1 -1.8162 -8.7230 2.2058 38 1 -2.9666 -7.4955 1.5184 39 1 -4.4105 -11.4765 1.7647 40 1 -4.4911 -10.0605 2.9440 41 1 -5.4691 -8.5948 1.1170 42 1 -5.3884 -10.0102 -0.0627 43 1 -2.7992 -10.4351 -0.9250 44 1 -1.6968 -10.8109 0.4690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597082098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:26 Heat of formation + Delta-G solvation = 13.962735 kcal Electronic energy + Delta-G solvation = -25372.296574 eV Core-core repulsion = 21677.867891 eV Total energy + Delta-G solvation = -3694.428683 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.01619 -40.10963 -38.43634 -37.69183 -34.78052 -33.79759 -33.48134 -31.61959 -30.59491 -29.14761 -25.99546 -25.56706 -25.24174 -23.22603 -22.73658 -22.54063 -20.96041 -20.04028 -18.61545 -18.28420 -17.50718 -17.24619 -16.17688 -15.94811 -15.81324 -15.57214 -15.46924 -14.88634 -14.68539 -14.58353 -14.42878 -13.93473 -13.46382 -12.96881 -12.74141 -12.57481 -12.40793 -12.23608 -12.03178 -11.93664 -11.74162 -11.72957 -11.08473 -10.98519 -10.70031 -10.69881 -10.58232 -10.52157 -10.10114 -10.05236 -9.88523 -9.76975 -9.43030 -9.20998 -8.98130 -8.52786 -7.65377 -6.18679 -4.23711 1.21083 1.45226 2.71049 2.90874 3.23220 3.27904 3.28993 3.51002 3.53014 4.00669 4.10153 4.27187 4.33131 4.44078 4.47209 4.59589 4.70169 4.92826 4.95382 5.12166 5.14647 5.18134 5.33489 5.38901 5.44378 5.46908 5.52790 5.59789 5.61049 5.77750 5.85542 5.88464 5.89269 5.98923 6.06945 6.09992 6.19396 6.37274 6.53592 6.64117 7.29896 7.34012 7.51803 7.63382 7.84764 8.08573 8.13659 8.38065 8.81268 9.41196 10.92688 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.002991 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.776035 B = 9359.645545 C =11621.102507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.066 3.934 11 O -0.316 6.316 12 C 0.067 3.933 13 C -0.148 4.148 14 C -0.161 4.161 15 C 0.074 3.926 16 N -0.444 5.444 17 C 0.328 3.672 18 N -0.651 5.651 19 C 0.514 3.486 20 O -0.481 6.481 21 C -0.131 4.131 22 C -0.083 4.083 23 C -0.163 4.163 24 C -0.166 4.166 25 C -0.151 4.151 26 C -0.073 4.073 27 H 0.265 0.735 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.145 0.855 33 H 0.134 0.866 34 H 0.156 0.844 35 H 0.424 0.576 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.073 0.927 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.208 -18.137 1.241 18.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.568 4.568 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.008 4.008 11 O -0.228 6.228 12 C 0.015 3.985 13 C -0.175 4.175 14 C -0.182 4.182 15 C -0.082 4.082 16 N -0.160 5.160 17 C 0.095 3.905 18 N -0.298 5.298 19 C 0.300 3.700 20 O -0.351 6.351 21 C -0.152 4.152 22 C -0.121 4.121 23 C -0.163 4.163 24 C -0.202 4.202 25 C -0.188 4.188 26 C -0.111 4.111 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.152 0.848 34 H 0.173 0.827 35 H 0.262 0.738 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.091 0.909 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.616 -19.542 1.235 19.912 hybrid contribution 0.943 2.428 -0.039 2.605 sum -2.673 -17.114 1.197 17.363 Atomic orbital electron populations 1.69952 1.06104 1.27198 1.49413 1.24977 0.94913 0.99392 0.94773 0.86545 0.79528 0.82544 0.78764 1.20058 1.21070 1.20063 1.20909 0.93027 0.90151 1.52663 0.92399 1.19115 0.94113 0.88882 0.98870 1.23393 0.97254 0.80325 0.99816 1.86099 1.36241 1.12897 1.87585 1.19611 0.91144 0.87147 1.00577 1.21611 0.92269 1.00343 1.03278 1.21889 1.01176 0.92544 1.02580 1.22411 0.88841 0.97869 0.99106 1.67622 1.07850 1.26947 1.13536 1.17860 0.85038 0.86907 1.00704 1.43551 1.03620 1.10617 1.72032 1.20678 0.90040 0.82960 0.76311 1.90769 1.65786 1.34076 1.44452 1.22656 0.90927 1.00991 1.00676 1.22461 0.96339 0.98156 0.95122 1.22166 0.91242 1.00661 1.02274 1.22800 1.03485 0.97977 0.95977 1.22805 0.93201 1.02014 1.00754 1.22372 0.95433 0.94698 0.98563 0.92576 0.95368 0.95352 0.92969 0.92957 0.83765 0.84817 0.82660 0.73797 0.86452 0.89182 0.90124 0.88682 0.88660 0.88436 0.88561 0.90880 0.88224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.58 16 4 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.53 -14.10 9.11 -34.44 -0.31 -14.41 16 8 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 9 C 0.03 0.67 5.34 -27.89 -0.15 0.52 16 10 C 0.07 1.30 4.70 37.16 0.17 1.47 16 11 O -0.32 -5.81 9.38 -19.67 -0.18 -6.00 16 12 C 0.07 1.12 6.72 -38.92 -0.26 0.86 16 13 C -0.15 -2.18 9.14 -39.17 -0.36 -2.53 16 14 C -0.16 -2.02 10.10 -39.44 -0.40 -2.42 16 15 C 0.07 1.02 11.17 -17.55 -0.20 0.83 16 16 N -0.44 -7.51 7.87 -12.22 -0.10 -7.60 16 17 C 0.33 5.48 7.45 -154.43 -1.15 4.33 16 18 N -0.65 -9.58 5.39 -11.29 -0.06 -9.64 16 19 C 0.51 7.33 7.32 -10.99 -0.08 7.25 16 20 O -0.48 -8.42 14.16 5.56 0.08 -8.34 16 21 C -0.13 -1.38 4.14 -90.85 -0.38 -1.76 16 22 C -0.08 -0.80 7.66 -26.05 -0.20 -1.00 16 23 C -0.16 -1.46 3.09 -154.71 -0.48 -1.94 16 24 C -0.17 -1.30 10.53 -26.94 -0.28 -1.59 16 25 C -0.15 -1.15 10.53 -26.94 -0.28 -1.43 16 26 C -0.07 -0.73 7.42 -26.14 -0.19 -0.93 16 27 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 28 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.71 -51.93 -0.40 0.58 16 32 H 0.14 1.96 6.44 -52.49 -0.34 1.62 16 33 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 34 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 35 H 0.42 5.59 8.05 -40.82 -0.33 5.26 16 36 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.93 8.09 -51.93 -0.42 0.51 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.10 1.14 7.44 -51.93 -0.39 0.75 16 LS Contribution 371.69 15.07 5.60 5.60 Total: -1.00 -31.80 371.69 -10.06 -41.86 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -6.46 Total: 4.41 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -4.64 Total: -11.15 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.58 Total: -41.97 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.11 Total: -14.34 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.80 -10.06 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597082098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.819 kcal (2) G-P(sol) polarization free energy of solvation -31.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds