Wall clock time and date at job start Tue Mar 31 2020 10:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86805 * 120.00276 * 2 1 4 4 H 1.48500 * 109.47029 * 240.00248 * 3 2 1 5 5 H 1.48496 * 109.46703 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46833 * 120.00228 * 3 2 1 7 7 C 1.37886 * 119.99947 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99721 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99805 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47225 * 179.97438 * 9 7 2 11 11 O 1.42895 * 109.47549 * 179.97438 * 10 9 7 12 12 C 1.35979 * 117.00458 * 180.02562 * 11 10 9 13 13 C 1.38801 * 120.49270 * 0.25597 * 12 11 10 14 14 C 1.38778 * 118.44438 * 180.26740 * 13 12 11 15 15 C 1.38091 * 119.35545 * 359.47538 * 14 13 12 16 16 N 1.31952 * 120.95050 * 0.28060 * 15 14 13 17 17 C 1.32274 * 121.69518 * 359.97438 * 16 15 14 18 18 N 1.39582 * 119.72874 * 179.97438 * 17 16 15 19 19 C 1.34779 * 119.99721 * 0.02562 * 18 17 16 20 20 O 1.21282 * 120.00168 * 359.97438 * 19 18 17 21 21 C 1.50698 * 119.99614 * 180.02562 * 19 18 17 22 22 C 1.53892 * 113.58940 * 279.21044 * 21 19 18 23 23 C 1.53414 * 86.82874 * 220.46064 * 22 21 19 24 24 C 1.52461 * 128.60797 * 165.09816 * 23 22 21 25 25 C 1.52468 * 128.51709 * 245.01569 * 23 22 21 26 26 C 1.53256 * 87.72096 * 25.01496 * 23 22 21 27 27 H 0.97005 * 119.99620 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47571 * 59.99978 * 9 7 2 29 29 H 1.09006 * 109.47158 * 299.99779 * 9 7 2 30 30 H 1.09000 * 109.47219 * 59.99900 * 10 9 7 31 31 H 1.08997 * 109.47554 * 299.99977 * 10 9 7 32 32 H 1.08001 * 120.78163 * 0.02562 * 13 12 11 33 33 H 1.08002 * 120.32573 * 179.76062 * 14 13 12 34 34 H 1.07999 * 119.52733 * 180.25942 * 15 14 13 35 35 H 0.97002 * 120.00131 * 180.02562 * 18 17 16 36 36 H 1.09001 * 112.83380 * 50.33049 * 21 19 18 37 37 H 1.09004 * 113.64058 * 334.93308 * 22 21 19 38 38 H 1.08999 * 113.64414 * 105.93147 * 22 21 19 39 39 H 1.08996 * 117.51626 * 224.95628 * 24 23 22 40 40 H 1.09006 * 117.51176 * 10.06655 * 24 23 22 41 41 H 1.08995 * 117.51287 * 349.80056 * 25 23 22 42 42 H 1.09003 * 117.50942 * 134.86554 * 25 23 22 43 43 H 1.08999 * 113.64621 * 220.48406 * 26 23 22 44 44 H 1.09000 * 113.72476 * 89.49631 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6621 -0.0027 11 8 1.5307 -4.8996 -0.0032 12 6 2.2712 -6.0401 -0.0036 13 6 3.6579 -5.9795 0.0018 14 6 4.3716 -7.1696 -0.0045 15 6 3.6875 -8.3692 -0.0050 16 7 2.3683 -8.3981 -0.0049 17 6 1.6488 -7.2881 -0.0041 18 7 0.2552 -7.3666 -0.0046 19 6 -0.3519 -8.5699 -0.0056 20 8 0.3126 -9.5844 -0.0064 21 6 -1.8565 -8.6545 -0.0068 22 6 -2.4852 -8.4643 1.3849 23 6 -3.4573 -9.5889 1.0057 24 6 -4.3776 -10.3973 1.9135 25 6 -4.9677 -9.5130 0.8113 26 6 -2.3922 -10.0968 0.0279 27 1 -0.4850 0.8401 0.0004 28 1 0.6247 -2.5563 -0.8919 29 1 0.6240 -2.5575 0.8881 30 1 2.8718 -3.6052 0.8873 31 1 2.8718 -3.6037 -0.8926 32 1 4.1695 -5.0283 0.0068 33 1 5.4515 -7.1579 -0.0045 34 1 4.2402 -9.2971 -0.0056 35 1 -0.2762 -6.5551 -0.0044 36 1 -2.3143 -8.0377 -0.7802 37 1 -1.8162 -8.7230 2.2058 38 1 -2.9666 -7.4955 1.5184 39 1 -4.4105 -11.4765 1.7647 40 1 -4.4911 -10.0605 2.9440 41 1 -5.4691 -8.5948 1.1170 42 1 -5.3884 -10.0102 -0.0627 43 1 -2.7992 -10.4351 -0.9250 44 1 -1.6968 -10.8109 0.4690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597082098.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:25 Heat of formation + Delta-G solvation = -3.333251 kcal Electronic energy + Delta-G solvation = -25373.046584 eV Core-core repulsion = 21677.867891 eV Total energy + Delta-G solvation = -3695.178693 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.14378 -41.11455 -39.52813 -38.92288 -35.96733 -35.44203 -34.55745 -32.90172 -32.24952 -30.45352 -27.17478 -26.79045 -26.41084 -24.62425 -23.73169 -23.28978 -22.60173 -21.14925 -19.61599 -19.31830 -18.84240 -18.35576 -18.01633 -17.19873 -17.08447 -16.56599 -16.47541 -16.21353 -15.87284 -15.74510 -15.50832 -15.18051 -14.71403 -14.35871 -14.18954 -13.66855 -13.63227 -13.40339 -13.31413 -13.05539 -12.81692 -12.72527 -12.54808 -12.44655 -12.31212 -11.86630 -11.70864 -11.64044 -11.47049 -11.40088 -11.28322 -11.03120 -10.59969 -10.59045 -10.41500 -10.13069 -8.86624 -8.25328 -6.37933 0.07582 0.27897 1.42701 1.45285 1.53117 1.61472 1.83985 2.10894 2.44534 2.82635 2.86791 3.09879 3.34355 3.38104 3.56054 3.63201 3.75734 3.84991 3.88491 4.02221 4.10875 4.25827 4.28984 4.33147 4.37091 4.46394 4.73016 4.74453 4.77317 4.80727 4.82728 4.95649 5.00364 5.03721 5.12481 5.22137 5.25608 5.30508 5.31121 5.33483 5.50597 5.53126 5.73506 6.08088 6.20610 6.32921 6.76664 6.93460 7.26080 7.32056 8.87051 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.011455 B = 0.002991 C = 0.002409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2443.776035 B = 9359.645545 C =11621.102507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.031 3.969 10 C 0.084 3.916 11 O -0.328 6.328 12 C 0.041 3.959 13 C -0.149 4.149 14 C -0.145 4.145 15 C 0.072 3.928 16 N -0.474 5.474 17 C 0.309 3.691 18 N -0.651 5.651 19 C 0.513 3.487 20 O -0.518 6.518 21 C -0.127 4.127 22 C -0.081 4.081 23 C -0.173 4.173 24 C -0.165 4.165 25 C -0.140 4.140 26 C -0.072 4.072 27 H 0.266 0.734 28 H 0.001 0.999 29 H 0.002 0.998 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.157 0.843 33 H 0.176 0.824 34 H 0.186 0.814 35 H 0.428 0.572 36 H 0.136 0.864 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.101 0.899 40 H 0.099 0.901 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.083 0.917 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.889 -18.136 1.179 18.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.006 4.006 10 C 0.009 3.991 11 O -0.242 6.242 12 C -0.010 4.010 13 C -0.176 4.176 14 C -0.166 4.166 15 C -0.084 4.084 16 N -0.190 5.190 17 C 0.077 3.923 18 N -0.299 5.299 19 C 0.301 3.699 20 O -0.390 6.390 21 C -0.148 4.148 22 C -0.119 4.119 23 C -0.173 4.173 24 C -0.202 4.202 25 C -0.177 4.177 26 C -0.110 4.110 27 H 0.075 0.925 28 H 0.020 0.980 29 H 0.020 0.980 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.175 0.825 33 H 0.193 0.807 34 H 0.203 0.797 35 H 0.266 0.734 36 H 0.154 0.846 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.102 0.898 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.299 -19.546 1.175 19.716 hybrid contribution 0.593 2.300 -0.011 2.375 sum -1.706 -17.246 1.164 17.370 Atomic orbital electron populations 1.70091 1.07885 1.28192 1.50594 1.25953 0.95759 1.03403 0.94289 0.85428 0.78199 0.77659 0.79350 1.18960 1.21005 1.18966 1.21371 0.93859 0.91076 1.52087 0.91133 1.18932 0.94492 0.90935 0.96281 1.22956 0.95636 0.79635 1.00848 1.86026 1.36630 1.13013 1.88512 1.19762 0.92165 0.86258 1.02797 1.21913 0.91469 1.01845 1.02346 1.22280 1.03074 0.91054 1.00181 1.23064 0.88125 0.99786 0.97458 1.67678 1.09494 1.27235 1.14588 1.18084 0.85817 0.87036 1.01389 1.43670 1.03375 1.11048 1.71774 1.21338 0.91394 0.82206 0.75010 1.90734 1.66941 1.35090 1.46275 1.22759 0.88205 1.01940 1.01895 1.22419 0.96340 0.99090 0.94032 1.22099 0.91799 1.00602 1.02759 1.22902 1.02618 0.98408 0.96293 1.22914 0.91681 1.02224 1.00882 1.22306 0.95505 0.93869 0.99318 0.92507 0.98014 0.97989 0.91838 0.91830 0.82549 0.80681 0.79706 0.73370 0.84637 0.90481 0.89132 0.88071 0.88237 0.87705 0.87511 0.89846 0.90133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.18 13.29 21.45 0.28 -53.89 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.97 41.83 29.54 68.60 2.03 43.85 16 4 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 5 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 16 7 C -0.55 -29.11 9.11 25.60 0.23 -28.88 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.03 1.56 5.34 29.84 0.16 1.71 16 10 C 0.08 3.28 4.70 71.98 0.34 3.61 16 11 O -0.33 -12.30 9.38 -93.31 -0.88 -13.17 16 12 C 0.04 1.36 6.72 22.70 0.15 1.51 16 13 C -0.15 -4.10 9.14 22.53 0.21 -3.89 16 14 C -0.15 -3.22 10.10 22.36 0.23 -2.99 16 15 C 0.07 1.85 11.17 84.64 0.95 2.79 16 16 N -0.47 -15.93 7.87 -192.58 -1.52 -17.44 16 17 C 0.31 10.46 7.45 132.98 0.99 11.45 16 18 N -0.65 -19.86 5.39 -308.02 -1.66 -21.52 16 19 C 0.51 15.13 7.32 87.66 0.64 15.77 16 20 O -0.52 -18.77 14.16 -3.04 -0.04 -18.82 16 21 C -0.13 -2.69 4.14 -10.94 -0.05 -2.74 16 22 C -0.08 -1.56 7.66 31.03 0.24 -1.33 16 23 C -0.17 -2.96 3.09 -52.31 -0.16 -3.13 16 24 C -0.17 -2.41 10.53 30.46 0.32 -2.09 16 25 C -0.14 -1.89 10.53 30.46 0.32 -1.57 16 26 C -0.07 -1.45 7.42 30.98 0.23 -1.22 16 27 H 0.27 14.61 8.31 -92.70 -0.77 13.84 16 28 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 30 H 0.06 2.32 7.68 -2.39 -0.02 2.31 16 31 H 0.06 2.33 7.71 -2.39 -0.02 2.31 16 32 H 0.16 3.85 6.44 -2.91 -0.02 3.84 16 33 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.19 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.43 11.86 8.05 -92.71 -0.75 11.12 16 36 H 0.14 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 1.67 8.09 -2.38 -0.02 1.65 16 38 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 40 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.08 1.92 7.44 -2.39 -0.02 1.91 16 Total: -1.00 -70.01 371.69 3.74 -66.28 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.27 Total: 24.96 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.26 Total: -10.24 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -2.89 Total: -92.86 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -0.92 Total: -31.99 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.85 kcal Total: -70.01 3.74 -66.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597082098.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.942 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds