Wall clock time and date at job start Tue Mar 31 2020 12:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.50698 * 120.00139 * 179.97438 * 5 4 3 7 7 H 1.08997 * 115.54716 * 154.30137 * 6 5 4 8 8 C 1.52995 * 117.49599 * 8.62658 * 6 5 4 9 9 C 1.53000 * 60.00233 * 252.51293 * 8 6 5 10 10 H 1.08993 * 117.50059 * 107.49059 * 9 8 6 11 11 C 1.50706 * 117.50165 * 252.51652 * 9 8 6 12 12 O 1.21275 * 119.99922 * 68.61808 * 11 9 8 13 13 N 1.34779 * 119.99658 * 248.61855 * 11 9 8 14 14 C 1.46499 * 119.99847 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.47075 * 180.02562 * 14 13 11 16 16 O 1.21295 * 119.99992 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99523 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00616 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99691 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99825 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46953 * 90.00243 * 22 20 18 24 24 H 1.48500 * 109.47020 * 210.00389 * 22 20 18 25 25 H 1.48501 * 109.47080 * 330.00531 * 22 20 18 26 26 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 27 27 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 28 28 C 1.50703 * 119.99968 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 30 30 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 31 31 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 32 32 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 34 34 H 1.08992 * 117.50614 * 0.02562 * 8 6 5 35 35 H 1.09002 * 117.49773 * 145.02650 * 8 6 5 36 36 H 0.96999 * 119.99882 * 0.02562 * 13 11 9 37 37 H 1.08997 * 109.47376 * 300.00418 * 14 13 11 38 38 H 1.09000 * 109.47145 * 60.00063 * 14 13 11 39 39 H 0.97000 * 120.00321 * 0.02562 * 17 15 14 40 40 H 0.97001 * 119.99850 * 179.97438 * 21 20 18 41 41 H 1.08009 * 119.99396 * 179.97438 * 26 5 4 42 42 H 1.09002 * 109.47152 * 269.72462 * 28 27 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 28 27 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0130 7 1 6.2506 -0.8855 0.4133 8 6 6.4860 1.3419 0.1843 9 6 6.4797 0.6757 -1.1930 10 1 5.8510 1.1204 -1.9643 11 6 7.7703 0.0666 -1.6773 12 8 8.2152 -0.9225 -1.1347 13 7 8.4301 0.6212 -2.7136 14 6 9.6849 0.0294 -3.1840 15 6 10.2160 0.8333 -4.3429 16 8 9.6060 1.8047 -4.7373 17 7 11.3682 0.4722 -4.9416 18 6 11.8516 1.2039 -5.9954 19 1 11.3089 2.0692 -6.3461 20 6 13.0392 0.8313 -6.6131 21 7 13.5023 1.5323 -7.6236 22 14 13.9776 -0.6659 -6.0071 23 1 13.5096 -1.8719 -6.7363 24 1 15.4295 -0.4722 -6.2510 25 1 13.7394 -0.8438 -4.5521 26 6 3.5805 -1.1971 -0.0013 27 6 2.1980 -1.1970 0.0049 28 6 1.4444 -2.5021 0.0098 29 1 -0.3634 0.0043 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3634 -0.8920 -0.5102 32 1 1.6584 2.1326 -0.0004 33 1 4.1205 2.1324 -0.0102 34 1 5.8616 2.2249 0.3195 35 1 7.4237 1.3398 0.7401 36 1 8.0744 1.4125 -3.1473 37 1 10.4148 0.0339 -2.3745 38 1 9.5049 -0.9965 -3.5052 39 1 11.8555 -0.3052 -4.6269 40 1 14.3316 1.2724 -8.0545 41 1 4.1205 -2.1325 -0.0021 42 1 1.2666 -2.8152 1.0386 43 1 2.0316 -3.2625 -0.5051 44 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597652042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:48 Heat of formation + Delta-G solvation = -32.462127 kcal Electronic energy + Delta-G solvation = -24567.676411 eV Core-core repulsion = 20871.234595 eV Total energy + Delta-G solvation = -3696.441816 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -40.46890 -39.57679 -38.44682 -36.80587 -34.53487 -33.75662 -33.09210 -32.37391 -31.82078 -28.47271 -27.98858 -26.66766 -24.85662 -23.31284 -22.98286 -22.29491 -20.16336 -19.71321 -19.46945 -18.61097 -17.60429 -16.52813 -16.09347 -15.74378 -15.40639 -15.32510 -15.01191 -14.86318 -14.57346 -14.24943 -14.12331 -13.66530 -13.40231 -13.21477 -13.11719 -13.00517 -12.61001 -12.45563 -12.38257 -12.22923 -12.19801 -12.15432 -11.97159 -11.32126 -11.25212 -11.12754 -10.74201 -10.65994 -10.60110 -10.08211 -9.83227 -9.71768 -8.95978 -8.91849 -8.79873 -8.55585 -8.32409 -6.42470 -3.95111 1.03044 1.16380 2.54923 2.98044 3.02754 3.10187 3.15393 3.41427 3.53976 3.87452 4.01939 4.31699 4.48803 4.52525 4.59750 4.61179 4.71372 4.74665 4.90669 4.91774 5.05793 5.09696 5.12357 5.18591 5.31612 5.36564 5.43042 5.52584 5.54106 5.57488 5.65430 5.73752 5.77991 5.79701 5.82307 5.92088 5.95800 6.23009 6.39451 6.43228 6.54181 6.78901 7.42135 7.71536 7.98366 8.33162 8.44271 8.79817 9.27867 9.61252 10.69630 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.002010 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.926123 B =13925.643448 C =14087.159193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.093 4.093 3 C -0.114 4.114 4 C -0.121 4.121 5 C -0.052 4.052 6 C -0.083 4.083 7 H 0.127 0.873 8 C -0.144 4.144 9 C -0.174 4.174 10 H 0.126 0.874 11 C 0.542 3.458 12 O -0.550 6.550 13 N -0.702 5.702 14 C 0.106 3.894 15 C 0.437 3.563 16 O -0.578 6.578 17 N -0.576 5.576 18 C -0.310 4.310 19 H 0.122 0.878 20 C 0.045 3.955 21 N -0.874 5.874 22 Si 0.879 3.121 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.267 1.267 26 C -0.106 4.106 27 C -0.086 4.086 28 C -0.118 4.118 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.121 0.879 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.105 0.895 36 H 0.413 0.587 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.374 0.626 40 H 0.276 0.724 41 H 0.123 0.877 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.289 -4.999 17.805 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.093 4.093 3 C -0.132 4.132 4 C -0.139 4.139 5 C -0.052 4.052 6 C -0.102 4.102 7 H 0.144 0.856 8 C -0.181 4.181 9 C -0.195 4.195 10 H 0.144 0.856 11 C 0.328 3.672 12 O -0.429 6.429 13 N -0.356 5.356 14 C -0.022 4.022 15 C 0.223 3.777 16 O -0.463 6.463 17 N -0.213 5.213 18 C -0.439 4.439 19 H 0.139 0.861 20 C -0.159 4.159 21 N -0.512 5.512 22 Si 0.705 3.295 23 H -0.194 1.194 24 H -0.200 1.200 25 H -0.192 1.192 26 C -0.124 4.124 27 C -0.086 4.086 28 C -0.174 4.174 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.139 0.861 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.124 0.876 36 H 0.252 0.748 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.208 0.792 40 H 0.086 0.914 41 H 0.141 0.859 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -22.171 -5.009 17.704 28.810 hybrid contribution 0.915 -0.697 -0.046 1.152 sum -21.255 -5.706 17.658 28.216 Atomic orbital electron populations 1.20848 0.91413 1.02825 1.02223 1.19760 0.95930 0.92717 1.00913 1.20970 0.94014 0.97423 1.00797 1.21044 0.94139 0.97729 1.00949 1.19091 0.92883 0.93311 0.99932 1.21061 0.90410 0.98303 1.00416 0.85556 1.23131 1.02893 0.96174 0.95916 1.22311 0.97471 1.06016 0.93684 0.85565 1.19537 0.84556 0.83536 0.79572 1.90673 1.68630 1.26046 1.57521 1.45620 1.23870 1.32435 1.33651 1.20987 0.86741 0.97507 0.96940 1.19631 0.83672 0.87863 0.86489 1.90543 1.59314 1.29617 1.66806 1.42124 1.20934 1.27466 1.30823 1.19444 1.06494 1.11230 1.06728 0.86064 1.25074 0.96774 0.98030 0.96048 1.69619 1.21630 1.38748 1.21245 0.86667 0.80616 0.82995 0.79191 1.19378 1.19950 1.19248 1.20865 0.93287 0.97739 1.00463 1.19731 0.93536 0.94934 1.00366 1.20864 1.00116 0.94110 1.02321 0.91279 0.91669 0.91200 0.86066 0.85778 0.87374 0.87643 0.74836 0.89715 0.89687 0.79242 0.91366 0.85853 0.91181 0.91503 0.91177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 9.60 36.00 0.35 -0.36 16 2 C -0.09 -0.80 5.88 -104.63 -0.62 -1.41 16 3 C -0.11 -0.98 9.70 -39.58 -0.38 -1.36 16 4 C -0.12 -1.11 9.30 -39.58 -0.37 -1.48 16 5 C -0.05 -0.53 5.61 -104.62 -0.59 -1.12 16 6 C -0.08 -0.89 5.55 -91.77 -0.51 -1.40 16 7 H 0.13 1.48 7.67 -51.93 -0.40 1.09 16 8 C -0.14 -1.38 9.56 -26.73 -0.26 -1.63 16 9 C -0.17 -2.01 5.82 -91.77 -0.53 -2.54 16 10 H 0.13 1.32 8.14 -51.93 -0.42 0.89 16 11 C 0.54 8.20 7.61 -10.98 -0.08 8.11 16 12 O -0.55 -9.82 16.26 5.56 0.09 -9.73 16 13 N -0.70 -11.22 5.53 -61.47 -0.34 -11.56 16 14 C 0.11 1.84 6.15 -5.19 -0.03 1.81 16 15 C 0.44 9.62 7.85 -10.99 -0.09 9.54 16 16 O -0.58 -14.61 15.24 5.54 0.08 -14.53 16 17 N -0.58 -13.39 5.09 -10.96 -0.06 -13.45 16 18 C -0.31 -8.55 10.16 -14.93 -0.15 -8.71 16 19 H 0.12 3.80 7.39 -52.49 -0.39 3.41 16 20 C 0.05 1.21 5.50 -17.46 -0.10 1.11 16 21 N -0.87 -24.90 13.96 55.50 0.77 -24.13 16 22 Si 0.88 18.98 27.74 -169.99 -4.71 14.27 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.28 6.52 56.52 0.37 -4.92 16 26 C -0.11 -1.06 9.39 -39.58 -0.37 -1.43 16 27 C -0.09 -0.77 5.88 -104.62 -0.62 -1.39 16 28 C -0.12 -0.78 9.61 36.01 0.35 -0.43 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 31 H 0.07 0.37 5.94 -51.93 -0.31 0.06 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.12 0.94 6.02 -52.49 -0.32 0.63 16 34 H 0.11 0.81 6.18 -51.93 -0.32 0.49 16 35 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 6.53 7.44 -40.82 -0.30 6.22 16 37 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.37 7.68 5.76 -40.82 -0.24 7.45 16 40 H 0.28 7.24 8.31 -40.82 -0.34 6.90 16 41 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 42 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.43 8.09 -51.93 -0.42 0.01 16 44 H 0.07 0.39 5.94 -51.93 -0.31 0.08 16 LS Contribution 369.52 15.07 5.57 5.57 Total: -1.00 -32.72 369.52 -8.56 -41.28 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -5.97 Total: 14.97 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.00 Total: -2.69 kcal Atomic # 7 Polarization: -49.52 SS G_CDS: 0.38 Total: -49.14 kcal Atomic # 8 Polarization: -24.43 SS G_CDS: 0.17 Total: -24.26 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.27 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.72 -8.56 -41.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597652042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.821 kcal (2) G-P(sol) polarization free energy of solvation -32.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds