Wall clock time and date at job start Tue Mar 31 2020 12:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38253 * 120.00596 * 2 1 4 4 C 1.38214 * 120.00308 * 180.27490 * 3 2 1 5 5 C 1.38256 * 120.00052 * 359.74398 * 4 3 2 6 6 C 1.50698 * 120.00139 * 179.97438 * 5 4 3 7 7 H 1.08997 * 115.54716 * 154.30137 * 6 5 4 8 8 C 1.52995 * 117.49599 * 8.62658 * 6 5 4 9 9 C 1.53000 * 60.00233 * 252.51293 * 8 6 5 10 10 H 1.08993 * 117.50059 * 107.49059 * 9 8 6 11 11 C 1.50706 * 117.50165 * 252.51652 * 9 8 6 12 12 O 1.21275 * 119.99922 * 68.61808 * 11 9 8 13 13 N 1.34779 * 119.99658 * 248.61855 * 11 9 8 14 14 C 1.46499 * 119.99847 * 179.97438 * 13 11 9 15 15 C 1.50702 * 109.47075 * 180.02562 * 14 13 11 16 16 O 1.21295 * 119.99992 * 359.97438 * 15 14 13 17 17 N 1.34774 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.37097 * 119.99523 * 180.02562 * 17 15 14 19 19 H 1.07997 * 120.00616 * 359.97438 * 18 17 15 20 20 C 1.38956 * 119.99691 * 180.02562 * 18 17 15 21 21 N 1.31412 * 119.99825 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00101 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46953 * 90.00243 * 22 20 18 24 24 H 1.48500 * 109.47020 * 210.00389 * 22 20 18 25 25 H 1.48501 * 109.47080 * 330.00531 * 22 20 18 26 26 C 1.38216 * 119.99493 * 0.02562 * 5 4 3 27 27 C 1.38218 * 119.99818 * 179.76321 * 2 1 3 28 28 C 1.50703 * 119.99968 * 0.02562 * 27 2 1 29 29 H 1.08995 * 109.47734 * 270.23743 * 1 2 3 30 30 H 1.09002 * 109.46829 * 30.23687 * 1 2 3 31 31 H 1.09000 * 109.47496 * 150.23001 * 1 2 3 32 32 H 1.08000 * 119.99553 * 359.97438 * 3 2 1 33 33 H 1.08001 * 120.00174 * 179.72549 * 4 3 2 34 34 H 1.08992 * 117.50614 * 0.02562 * 8 6 5 35 35 H 1.09002 * 117.49773 * 145.02650 * 8 6 5 36 36 H 0.96999 * 119.99882 * 0.02562 * 13 11 9 37 37 H 1.08997 * 109.47376 * 300.00418 * 14 13 11 38 38 H 1.09000 * 109.47145 * 60.00063 * 14 13 11 39 39 H 0.97000 * 120.00321 * 0.02562 * 17 15 14 40 40 H 0.97001 * 119.99850 * 179.97438 * 21 20 18 41 41 H 1.08009 * 119.99396 * 179.97438 * 26 5 4 42 42 H 1.09002 * 109.47152 * 269.72462 * 28 27 2 43 43 H 1.09001 * 109.46980 * 149.72562 * 28 27 2 44 44 H 1.09004 * 109.47113 * 29.72543 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1983 1.1972 0.0000 4 6 3.5805 1.1972 -0.0057 5 6 4.2717 -0.0002 -0.0061 6 6 5.7787 -0.0003 -0.0130 7 1 6.2506 -0.8855 0.4133 8 6 6.4860 1.3419 0.1843 9 6 6.4797 0.6757 -1.1930 10 1 5.8510 1.1204 -1.9643 11 6 7.7703 0.0666 -1.6773 12 8 8.2152 -0.9225 -1.1347 13 7 8.4301 0.6212 -2.7136 14 6 9.6849 0.0294 -3.1840 15 6 10.2160 0.8333 -4.3429 16 8 9.6060 1.8047 -4.7373 17 7 11.3682 0.4722 -4.9416 18 6 11.8516 1.2039 -5.9954 19 1 11.3089 2.0692 -6.3461 20 6 13.0392 0.8313 -6.6131 21 7 13.5023 1.5323 -7.6236 22 14 13.9776 -0.6659 -6.0071 23 1 13.5096 -1.8719 -6.7363 24 1 15.4295 -0.4722 -6.2510 25 1 13.7394 -0.8438 -4.5521 26 6 3.5805 -1.1971 -0.0013 27 6 2.1980 -1.1970 0.0049 28 6 1.4444 -2.5021 0.0098 29 1 -0.3634 0.0043 1.0276 30 1 -0.3633 0.8879 -0.5175 31 1 -0.3634 -0.8920 -0.5102 32 1 1.6584 2.1326 -0.0004 33 1 4.1205 2.1324 -0.0102 34 1 5.8616 2.2249 0.3195 35 1 7.4237 1.3398 0.7401 36 1 8.0744 1.4125 -3.1473 37 1 10.4148 0.0339 -2.3745 38 1 9.5049 -0.9965 -3.5052 39 1 11.8555 -0.3052 -4.6269 40 1 14.3316 1.2724 -8.0545 41 1 4.1205 -2.1325 -0.0021 42 1 1.2666 -2.8152 1.0386 43 1 2.0316 -3.2625 -0.5051 44 1 0.4901 -2.3725 -0.5007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597652042.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:45 Heat of formation + Delta-G solvation = -53.541139 kcal Electronic energy + Delta-G solvation = -24568.590466 eV Core-core repulsion = 20871.234595 eV Total energy + Delta-G solvation = -3697.355871 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.44929 -40.66155 -40.02708 -37.73497 -36.30251 -35.33607 -33.86049 -33.73182 -32.98394 -29.87958 -28.64759 -27.39466 -26.51830 -24.51577 -23.70178 -22.94922 -21.50633 -21.29502 -20.54455 -20.21120 -18.78567 -17.54415 -17.44698 -16.81095 -16.76224 -16.68838 -16.43538 -15.76374 -15.54907 -15.48074 -15.10228 -14.90821 -14.63500 -14.35431 -14.09754 -14.00605 -13.71853 -13.65178 -13.57707 -13.30739 -13.03966 -12.98513 -12.72450 -12.68528 -12.46439 -12.01751 -11.97312 -11.79170 -11.60138 -11.51236 -11.39082 -11.03868 -10.68548 -10.35760 -10.21653 -9.62395 -9.23013 -8.47144 -6.09306 0.34727 0.49674 1.29581 1.32596 1.42093 1.42635 1.76882 1.94169 2.19038 2.62360 2.84446 3.06396 3.09025 3.50599 3.67970 3.82326 3.90640 3.97893 4.02546 4.11424 4.14117 4.21030 4.37040 4.37275 4.38419 4.46297 4.69362 4.73563 4.79011 4.87840 4.90706 4.95198 5.04012 5.05079 5.10443 5.22265 5.27547 5.41110 5.46747 5.57524 5.71809 5.78238 5.86225 6.15623 6.44671 6.47662 6.76211 7.10211 7.27432 7.75622 8.69197 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.027500 B = 0.002010 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.926123 B =13925.643448 C =14087.159193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.101 4.101 3 C -0.122 4.122 4 C -0.127 4.127 5 C -0.066 4.066 6 C -0.081 4.081 7 H 0.111 0.889 8 C -0.126 4.126 9 C -0.183 4.183 10 H 0.139 0.861 11 C 0.544 3.456 12 O -0.578 6.578 13 N -0.706 5.706 14 C 0.117 3.883 15 C 0.444 3.556 16 O -0.614 6.614 17 N -0.577 5.577 18 C -0.332 4.332 19 H 0.064 0.936 20 C -0.008 4.008 21 N -0.925 5.925 22 Si 0.959 3.041 23 H -0.257 1.257 24 H -0.272 1.272 25 H -0.233 1.233 26 C -0.124 4.124 27 C -0.097 4.097 28 C -0.117 4.117 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.104 0.896 36 H 0.414 0.586 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.392 0.608 40 H 0.281 0.719 41 H 0.121 0.879 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.297 -6.322 19.810 31.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.101 4.101 3 C -0.140 4.140 4 C -0.145 4.145 5 C -0.067 4.067 6 C -0.099 4.099 7 H 0.129 0.871 8 C -0.163 4.163 9 C -0.204 4.204 10 H 0.156 0.844 11 C 0.332 3.668 12 O -0.459 6.459 13 N -0.359 5.359 14 C -0.011 4.011 15 C 0.232 3.768 16 O -0.500 6.500 17 N -0.217 5.217 18 C -0.461 4.461 19 H 0.082 0.918 20 C -0.208 4.208 21 N -0.564 5.564 22 Si 0.779 3.221 23 H -0.181 1.181 24 H -0.197 1.197 25 H -0.157 1.157 26 C -0.142 4.142 27 C -0.097 4.097 28 C -0.173 4.173 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.151 0.849 35 H 0.122 0.878 36 H 0.253 0.747 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.228 0.772 40 H 0.091 0.909 41 H 0.139 0.861 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -23.203 -6.333 19.729 31.109 hybrid contribution 1.097 -0.201 -0.670 1.301 sum -22.106 -6.534 19.059 29.910 Atomic orbital electron populations 1.20895 0.89636 1.03625 1.03044 1.20133 0.97391 0.92553 1.00052 1.21285 0.94028 0.98373 1.00272 1.21251 0.94639 0.97872 1.00698 1.19126 0.92471 0.93939 1.01115 1.20974 0.90905 0.98420 0.99637 0.87087 1.23271 1.02931 0.96497 0.93647 1.22285 0.96000 1.07256 0.94816 0.84368 1.20056 0.85168 0.82956 0.78637 1.90657 1.69621 1.27310 1.58291 1.45685 1.23568 1.32571 1.34080 1.20898 0.87738 0.97202 0.95225 1.20492 0.82563 0.87177 0.86578 1.90530 1.60151 1.31349 1.67971 1.41930 1.21663 1.27886 1.30239 1.19033 1.07224 1.10900 1.08960 0.91827 1.26078 0.97297 1.01800 0.95657 1.69780 1.22503 1.41236 1.22894 0.85440 0.78322 0.77770 0.80561 1.18099 1.19735 1.15652 1.21023 0.94078 0.97800 1.01336 1.20029 0.93368 0.96228 1.00085 1.20903 1.00356 0.93028 1.03031 0.90340 0.90834 0.90482 0.84152 0.84288 0.84864 0.87781 0.74740 0.87789 0.87876 0.77226 0.90886 0.86125 0.90328 0.91597 0.89974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.60 71.23 0.68 -0.45 16 2 C -0.10 -1.56 5.88 -19.87 -0.12 -1.68 16 3 C -0.12 -1.86 9.70 22.27 0.22 -1.64 16 4 C -0.13 -2.11 9.30 22.27 0.21 -1.90 16 5 C -0.07 -1.30 5.61 -19.87 -0.11 -1.41 16 6 C -0.08 -1.66 5.55 -11.54 -0.06 -1.73 16 7 H 0.11 2.62 7.67 -2.39 -0.02 2.60 16 8 C -0.13 -2.18 9.56 30.59 0.29 -1.89 16 9 C -0.18 -3.99 5.82 -11.54 -0.07 -4.06 16 10 H 0.14 2.68 8.14 -2.39 -0.02 2.66 16 11 C 0.54 15.84 7.61 87.66 0.67 16.51 16 12 O -0.58 -20.04 16.26 -3.01 -0.05 -20.09 16 13 N -0.71 -21.76 5.53 -466.79 -2.58 -24.34 16 14 C 0.12 3.86 6.15 85.63 0.53 4.38 16 15 C 0.44 19.43 7.85 87.66 0.69 20.12 16 16 O -0.61 -31.72 15.24 -3.08 -0.05 -31.76 16 17 N -0.58 -26.60 5.09 -306.98 -1.56 -28.17 16 18 C -0.33 -18.88 10.16 84.04 0.85 -18.03 16 19 H 0.06 4.27 7.39 -2.91 -0.02 4.25 16 20 C -0.01 -0.44 5.50 84.93 0.47 0.02 16 21 N -0.92 -54.27 13.96 21.67 0.30 -53.97 16 22 Si 0.96 38.10 27.74 68.60 1.90 40.00 16 23 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 24 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 25 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 26 C -0.12 -2.45 9.39 22.27 0.21 -2.24 16 27 C -0.10 -1.65 5.88 -19.87 -0.12 -1.76 16 28 C -0.12 -1.40 9.61 71.24 0.68 -0.72 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.60 8.09 -2.39 -0.02 0.58 16 31 H 0.08 0.64 5.94 -2.39 -0.01 0.62 16 32 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 33 H 0.14 1.76 6.02 -2.91 -0.02 1.75 16 34 H 0.13 1.62 6.18 -2.39 -0.01 1.60 16 35 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.41 12.84 7.44 -92.71 -0.69 12.15 16 37 H 0.10 3.10 8.14 -2.39 -0.02 3.09 16 38 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 39 H 0.39 15.16 5.76 -92.71 -0.53 14.62 16 40 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 41 H 0.12 2.29 8.06 -2.91 -0.02 2.27 16 42 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.07 0.79 8.09 -2.39 -0.02 0.77 16 44 H 0.08 0.76 5.94 -2.38 -0.01 0.75 16 Total: -1.00 -74.03 369.52 2.75 -71.28 By element: Atomic # 1 Polarization: 43.75 SS G_CDS: -0.23 Total: 43.52 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: 5.02 Total: 3.54 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -3.84 Total: -106.48 kcal Atomic # 8 Polarization: -51.76 SS G_CDS: -0.10 Total: -51.86 kcal Atomic # 14 Polarization: 38.10 SS G_CDS: 1.90 Total: 40.00 kcal Total: -74.03 2.75 -71.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597652042.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.734 kcal (2) G-P(sol) polarization free energy of solvation -74.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds