Wall clock time and date at job start Tue Mar 31 2020 12:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99981 * 2 1 4 4 C 1.38218 * 119.99728 * 180.23349 * 3 2 1 5 5 C 1.38261 * 119.99934 * 359.81208 * 4 3 2 6 6 C 1.38211 * 119.99905 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99401 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.55980 * 176.05573 * 7 6 5 9 9 C 1.50428 * 109.56951 * 55.81925 * 7 6 5 10 10 O 1.21281 * 118.49303 * 72.90790 * 9 7 6 11 11 N 1.33387 * 123.02097 * 252.87899 * 9 7 6 12 12 C 1.45637 * 124.58915 * 355.68734 * 11 9 7 13 13 C 1.52993 * 110.77529 * 21.89366 * 12 11 9 14 14 N 1.47052 * 109.56741 * 296.28591 * 7 6 5 15 15 C 1.34772 * 121.35537 * 257.06563 * 14 7 6 16 16 O 1.21289 * 120.00204 * 359.97438 * 15 14 7 17 17 C 1.50704 * 120.00063 * 180.02562 * 15 14 7 18 18 C 1.52998 * 109.46867 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46587 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00207 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99724 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46938 * 89.99862 * 23 21 19 25 25 H 1.48497 * 109.47072 * 210.00029 * 23 21 19 26 26 H 1.48499 * 109.46829 * 330.00093 * 23 21 19 27 27 C 1.38215 * 120.00083 * 179.81426 * 2 1 3 28 28 H 1.08999 * 109.46799 * 270.18564 * 1 2 3 29 29 H 1.08998 * 109.46999 * 30.18785 * 1 2 3 30 30 H 1.09002 * 109.47062 * 150.18597 * 1 2 3 31 31 H 1.07999 * 120.00008 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.99802 * 179.78984 * 4 3 2 33 33 H 1.07997 * 119.99333 * 179.97438 * 5 4 3 34 34 H 0.97003 * 117.70165 * 175.70126 * 11 9 7 35 35 H 1.09005 * 109.22010 * 142.22775 * 12 11 9 36 36 H 1.09007 * 109.21783 * 261.60785 * 12 11 9 37 37 H 1.09003 * 109.71392 * 72.95127 * 13 12 11 38 38 H 1.09000 * 109.71966 * 193.55318 * 13 12 11 39 39 H 1.08997 * 109.46566 * 299.99849 * 17 15 14 40 40 H 1.09000 * 109.46925 * 59.99548 * 17 15 14 41 41 H 1.08997 * 109.47413 * 299.99341 * 18 17 15 42 42 H 1.09000 * 109.47708 * 60.00038 * 18 17 15 43 43 H 0.96998 * 119.99883 * 179.97438 * 22 21 19 44 44 H 1.08005 * 119.99685 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0024 7 6 4.3342 -2.5021 -0.0041 8 1 3.6295 -3.3305 0.0697 9 6 5.2798 -2.5394 1.1652 10 8 4.8194 -2.6895 2.2771 11 7 6.6016 -2.4154 1.0353 12 6 7.3019 -2.3205 -0.2381 13 6 6.3568 -1.8442 -1.3430 14 7 5.1074 -2.6228 -1.2490 15 6 4.6921 -3.4129 -2.2588 16 8 3.6613 -4.0430 -2.1512 17 6 5.5089 -3.5143 -3.5212 18 6 4.8208 -4.4695 -4.4984 19 6 5.6374 -4.5704 -5.7611 20 1 6.5550 -4.0090 -5.8571 21 6 5.2130 -5.3794 -6.7937 22 7 4.0958 -6.0634 -6.6766 23 14 6.2247 -5.5039 -8.3591 24 1 7.2070 -6.6097 -8.2269 25 1 5.3255 -5.7753 -9.5093 26 1 6.9458 -4.2256 -8.5853 27 6 2.1981 -1.1970 0.0039 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 -0.0083 33 1 5.3517 -0.0001 -0.0101 34 1 7.1336 -2.3867 1.8459 35 1 8.1266 -1.6142 -0.1423 36 1 7.6981 -3.3007 -0.5036 37 1 6.1407 -0.7841 -1.2103 38 1 6.8185 -2.0062 -2.3170 39 1 5.5965 -2.5282 -3.9773 40 1 6.5023 -3.8934 -3.2816 41 1 4.7336 -5.4555 -4.0421 42 1 3.8272 -4.0908 -4.7380 43 1 3.7970 -6.6323 -7.4032 44 1 1.6581 -2.1323 0.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598425313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:50 Heat of formation + Delta-G solvation = -46.277022 kcal Electronic energy + Delta-G solvation = -26598.983570 eV Core-core repulsion = 22901.942696 eV Total energy + Delta-G solvation = -3697.040875 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.18 seconds Orbital eigenvalues (eV) -41.18662 -39.09573 -38.89766 -36.56769 -34.50351 -33.57752 -32.85177 -32.02851 -30.82411 -29.52620 -27.52502 -26.87751 -25.33979 -24.16291 -22.42934 -21.86511 -21.38844 -19.67324 -18.69731 -17.62346 -17.19364 -16.68396 -16.56331 -16.07819 -15.59257 -15.50041 -15.19789 -14.99431 -14.47137 -14.30051 -13.90248 -13.77424 -13.72292 -13.36794 -13.09138 -12.69173 -12.42805 -12.26248 -12.22442 -12.15154 -12.02779 -11.90314 -11.32859 -11.18277 -11.08789 -10.96734 -10.64218 -10.39344 -10.03375 -9.70429 -9.41243 -9.32389 -9.14309 -8.86256 -8.71313 -8.66349 -8.35829 -5.99790 -4.04740 1.13061 1.28948 2.39714 2.81088 3.01619 3.09962 3.30553 3.37081 3.39070 3.67215 4.26696 4.42680 4.45513 4.54710 4.72161 4.76100 4.78640 4.89140 4.97609 5.11226 5.23547 5.29596 5.31765 5.35373 5.47428 5.49386 5.52741 5.61077 5.71212 5.91138 6.01593 6.06086 6.09967 6.24466 6.31092 6.39716 6.48948 6.54405 6.77229 6.86859 7.01542 7.50106 7.69387 7.79884 7.94806 8.02028 8.31779 8.55694 9.03205 9.59141 11.11095 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003575 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.440213 B = 7830.502777 C = 8851.946954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.085 4.085 3 C -0.116 4.116 4 C -0.117 4.117 5 C -0.116 4.116 6 C -0.081 4.081 7 C 0.171 3.829 8 H 0.133 0.867 9 C 0.526 3.474 10 O -0.541 6.541 11 N -0.717 5.717 12 C 0.093 3.907 13 C 0.083 3.917 14 N -0.622 5.622 15 C 0.519 3.481 16 O -0.522 6.522 17 C -0.126 4.126 18 C 0.037 3.963 19 C -0.528 4.528 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.889 5.889 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 C -0.090 4.090 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.122 0.878 34 H 0.400 0.600 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.115 0.885 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.024 0.976 42 H 0.024 0.976 43 H 0.261 0.739 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 15.640 15.185 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.085 4.085 3 C -0.134 4.134 4 C -0.135 4.135 5 C -0.134 4.134 6 C -0.083 4.083 7 C 0.064 3.936 8 H 0.151 0.849 9 C 0.311 3.689 10 O -0.418 6.418 11 N -0.369 5.369 12 C -0.033 4.033 13 C -0.041 4.041 14 N -0.359 5.359 15 C 0.310 3.690 16 O -0.395 6.395 17 C -0.166 4.166 18 C -0.001 4.001 19 C -0.566 4.566 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.720 3.280 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 C -0.108 4.108 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.235 0.765 35 H 0.109 0.891 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.071 0.929 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.526 15.022 15.467 21.709 hybrid contribution 0.961 -0.039 -0.670 1.173 sum 3.487 14.983 14.796 21.345 Atomic orbital electron populations 1.20804 0.90929 1.03079 1.02340 1.19919 0.96298 0.92895 0.99399 1.21053 0.94253 0.97485 1.00622 1.21052 0.94348 0.97648 1.00485 1.21074 0.99634 0.92070 1.00643 1.19618 0.93927 0.93357 1.01387 1.20032 0.93107 0.98063 0.82364 0.84909 1.20089 0.83015 0.75297 0.90470 1.90773 1.75825 1.49220 1.25939 1.45339 1.07036 1.74571 1.10003 1.21843 0.95104 1.02947 0.83359 1.22300 0.84713 0.96534 1.00517 1.48631 1.23771 1.47543 1.15992 1.21713 0.86238 0.76669 0.84368 1.90687 1.24774 1.43689 1.80364 1.21911 0.99341 1.03380 0.91928 1.18922 0.95813 0.93702 0.91653 1.21184 1.08119 1.27117 1.00227 0.92581 1.25020 0.95063 0.95577 0.98634 1.69997 1.21513 1.28474 1.32707 0.86594 0.79995 0.78354 0.83020 1.20669 1.21211 1.19870 1.20984 0.93085 0.98237 0.98528 0.91115 0.91500 0.91168 0.86033 0.85930 0.86075 0.76468 0.89078 0.90600 0.89921 0.86684 0.89979 0.90032 0.95762 0.95749 0.92901 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.09 -1.01 5.88 -104.62 -0.62 -1.63 16 3 C -0.12 -1.23 9.70 -39.58 -0.38 -1.62 16 4 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 5 C -0.12 -1.35 8.30 -39.58 -0.33 -1.68 16 6 C -0.08 -1.12 5.01 -104.63 -0.52 -1.65 16 7 C 0.17 2.51 2.76 -70.06 -0.19 2.31 16 8 H 0.13 2.24 6.97 -51.93 -0.36 1.87 16 9 C 0.53 7.28 6.56 -11.73 -0.08 7.20 16 10 O -0.54 -9.25 17.80 5.56 0.10 -9.15 16 11 N -0.72 -7.03 5.42 -61.32 -0.33 -7.36 16 12 C 0.09 0.68 7.34 -4.51 -0.03 0.65 16 13 C 0.08 0.78 6.00 -3.49 -0.02 0.76 16 14 N -0.62 -8.83 2.62 -167.66 -0.44 -9.27 16 15 C 0.52 9.69 7.73 -10.99 -0.08 9.61 16 16 O -0.52 -11.98 15.54 5.55 0.09 -11.90 16 17 C -0.13 -2.40 4.02 -27.88 -0.11 -2.51 16 18 C 0.04 0.95 4.26 -27.88 -0.12 0.83 16 19 C -0.53 -14.49 9.11 -34.44 -0.31 -14.81 16 20 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 23 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 27 C -0.09 -1.24 9.33 -39.59 -0.37 -1.61 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 30 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.12 1.18 5.59 -52.49 -0.29 0.89 16 34 H 0.40 3.24 8.80 -40.82 -0.36 2.88 16 35 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.08 0.68 5.10 -51.93 -0.26 0.42 16 38 H 0.12 0.98 6.07 -51.93 -0.31 0.66 16 39 H 0.08 1.41 7.84 -51.93 -0.41 1.00 16 40 H 0.08 1.37 7.88 -51.93 -0.41 0.96 16 41 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 42 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.13 1.75 7.95 -52.48 -0.42 1.33 16 LS Contribution 362.18 15.07 5.46 5.46 Total: -1.00 -36.26 362.18 -8.89 -45.15 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -6.16 Total: 2.03 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: -3.31 Total: -4.89 kcal Atomic # 7 Polarization: -42.81 SS G_CDS: -0.04 Total: -42.85 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: 0.19 Total: -21.05 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.26 -8.89 -45.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598425313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.131 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds