Wall clock time and date at job start Tue Mar 31 2020 12:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38256 * 119.99981 * 2 1 4 4 C 1.38218 * 119.99728 * 180.23349 * 3 2 1 5 5 C 1.38261 * 119.99934 * 359.81208 * 4 3 2 6 6 C 1.38211 * 119.99905 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99401 * 179.97438 * 6 5 4 8 8 H 1.09006 * 109.55980 * 176.05573 * 7 6 5 9 9 C 1.50428 * 109.56951 * 55.81925 * 7 6 5 10 10 O 1.21281 * 118.49303 * 72.90790 * 9 7 6 11 11 N 1.33387 * 123.02097 * 252.87899 * 9 7 6 12 12 C 1.45637 * 124.58915 * 355.68734 * 11 9 7 13 13 C 1.52993 * 110.77529 * 21.89366 * 12 11 9 14 14 N 1.47052 * 109.56741 * 296.28591 * 7 6 5 15 15 C 1.34772 * 121.35537 * 257.06563 * 14 7 6 16 16 O 1.21289 * 120.00204 * 359.97438 * 15 14 7 17 17 C 1.50704 * 120.00063 * 180.02562 * 15 14 7 18 18 C 1.52998 * 109.46867 * 179.97438 * 17 15 14 19 19 C 1.50708 * 109.46587 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00207 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99976 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99724 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00227 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46938 * 89.99862 * 23 21 19 25 25 H 1.48497 * 109.47072 * 210.00029 * 23 21 19 26 26 H 1.48499 * 109.46829 * 330.00093 * 23 21 19 27 27 C 1.38215 * 120.00083 * 179.81426 * 2 1 3 28 28 H 1.08999 * 109.46799 * 270.18564 * 1 2 3 29 29 H 1.08998 * 109.46999 * 30.18785 * 1 2 3 30 30 H 1.09002 * 109.47062 * 150.18597 * 1 2 3 31 31 H 1.07999 * 120.00008 * 0.02562 * 3 2 1 32 32 H 1.07996 * 119.99802 * 179.78984 * 4 3 2 33 33 H 1.07997 * 119.99333 * 179.97438 * 5 4 3 34 34 H 0.97003 * 117.70165 * 175.70126 * 11 9 7 35 35 H 1.09005 * 109.22010 * 142.22775 * 12 11 9 36 36 H 1.09007 * 109.21783 * 261.60785 * 12 11 9 37 37 H 1.09003 * 109.71392 * 72.95127 * 13 12 11 38 38 H 1.09000 * 109.71966 * 193.55318 * 13 12 11 39 39 H 1.08997 * 109.46566 * 299.99849 * 17 15 14 40 40 H 1.09000 * 109.46925 * 59.99548 * 17 15 14 41 41 H 1.08997 * 109.47413 * 299.99341 * 18 17 15 42 42 H 1.09000 * 109.47708 * 60.00038 * 18 17 15 43 43 H 0.96998 * 119.99883 * 179.97438 * 22 21 19 44 44 H 1.08005 * 119.99685 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0049 5 6 4.2717 -0.0001 -0.0058 6 6 3.5806 -1.1970 -0.0024 7 6 4.3342 -2.5021 -0.0041 8 1 3.6295 -3.3305 0.0697 9 6 5.2798 -2.5394 1.1652 10 8 4.8194 -2.6895 2.2771 11 7 6.6016 -2.4154 1.0353 12 6 7.3019 -2.3205 -0.2381 13 6 6.3568 -1.8442 -1.3430 14 7 5.1074 -2.6228 -1.2490 15 6 4.6921 -3.4129 -2.2588 16 8 3.6613 -4.0430 -2.1512 17 6 5.5089 -3.5143 -3.5212 18 6 4.8208 -4.4695 -4.4984 19 6 5.6374 -4.5704 -5.7611 20 1 6.5550 -4.0090 -5.8571 21 6 5.2130 -5.3794 -6.7937 22 7 4.0958 -6.0634 -6.6766 23 14 6.2247 -5.5039 -8.3591 24 1 7.2070 -6.6097 -8.2269 25 1 5.3255 -5.7753 -9.5093 26 1 6.9458 -4.2256 -8.5853 27 6 2.1981 -1.1970 0.0039 28 1 -0.3633 0.0033 1.0277 29 1 -0.3633 0.8883 -0.5167 30 1 -0.3633 -0.8917 -0.5109 31 1 1.6583 2.1326 0.0004 32 1 4.1205 2.1325 -0.0083 33 1 5.3517 -0.0001 -0.0101 34 1 7.1336 -2.3867 1.8459 35 1 8.1266 -1.6142 -0.1423 36 1 7.6981 -3.3007 -0.5036 37 1 6.1407 -0.7841 -1.2103 38 1 6.8185 -2.0062 -2.3170 39 1 5.5965 -2.5282 -3.9773 40 1 6.5023 -3.8934 -3.2816 41 1 4.7336 -5.4555 -4.0421 42 1 3.8272 -4.0908 -4.7380 43 1 3.7970 -6.6323 -7.4032 44 1 1.6581 -2.1323 0.0073 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598425313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:12:48 Heat of formation + Delta-G solvation = -71.706875 kcal Electronic energy + Delta-G solvation = -26600.086292 eV Core-core repulsion = 22901.942696 eV Total energy + Delta-G solvation = -3698.143596 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.27171 -40.29902 -40.00704 -37.71067 -35.67200 -35.42673 -33.91973 -33.21925 -32.43091 -30.43563 -28.79593 -27.84546 -27.02912 -25.04741 -23.72655 -23.32799 -22.27895 -20.99948 -19.73019 -19.03967 -18.39142 -18.05836 -17.60718 -17.35611 -16.81844 -16.52728 -16.46027 -16.36405 -15.99983 -15.42831 -15.17864 -14.73415 -14.62500 -14.43760 -14.21482 -14.07806 -13.80596 -13.72628 -13.30384 -13.13920 -13.03512 -12.90715 -12.80541 -12.72152 -12.43862 -12.23647 -11.98071 -11.92317 -11.63066 -11.52644 -11.29300 -10.82662 -10.55201 -10.24631 -9.85953 -9.79640 -9.61677 -8.16013 -6.30175 0.20266 0.38017 1.30568 1.44521 1.47127 1.57831 1.58635 1.71861 2.09329 2.44753 2.76750 3.17776 3.33908 3.55300 3.60722 3.81750 3.83932 3.95700 4.02182 4.15185 4.20819 4.38180 4.40950 4.45049 4.48363 4.54222 4.68271 4.73295 4.76351 4.87112 4.92632 5.00447 5.04352 5.20209 5.22391 5.44410 5.47203 5.51924 5.60266 5.62694 5.71963 5.86303 6.00202 6.06043 6.17607 6.23538 6.88274 6.96910 7.13049 7.40581 8.96817 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013862 B = 0.003575 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.440213 B = 7830.502777 C = 8851.946954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.113 4.113 5 C -0.120 4.120 6 C -0.101 4.101 7 C 0.171 3.829 8 H 0.093 0.907 9 C 0.528 3.472 10 O -0.583 6.583 11 N -0.699 5.699 12 C 0.091 3.909 13 C 0.069 3.931 14 N -0.609 5.609 15 C 0.517 3.483 16 O -0.583 6.583 17 C -0.110 4.110 18 C 0.041 3.959 19 C -0.539 4.539 20 H 0.082 0.918 21 C -0.008 4.008 22 N -0.940 5.940 23 Si 0.973 3.027 24 H -0.272 1.272 25 H -0.290 1.290 26 H -0.251 1.251 27 C -0.125 4.125 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.145 0.855 34 H 0.413 0.587 35 H 0.145 0.855 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.111 0.889 40 H 0.115 0.885 41 H -0.020 1.020 42 H -0.022 1.022 43 H 0.261 0.739 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.426 19.218 14.776 25.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.138 4.138 6 C -0.103 4.103 7 C 0.064 3.936 8 H 0.111 0.889 9 C 0.313 3.687 10 O -0.463 6.463 11 N -0.351 5.351 12 C -0.033 4.033 13 C -0.052 4.052 14 N -0.344 5.344 15 C 0.308 3.692 16 O -0.462 6.462 17 C -0.149 4.149 18 C 0.004 3.996 19 C -0.576 4.576 20 H 0.100 0.900 21 C -0.205 4.205 22 N -0.580 5.580 23 Si 0.797 3.203 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.175 1.175 27 C -0.144 4.144 28 H 0.100 0.900 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.170 0.830 32 H 0.177 0.823 33 H 0.162 0.838 34 H 0.250 0.750 35 H 0.163 0.837 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.152 0.848 39 H 0.129 0.871 40 H 0.133 0.867 41 H -0.002 1.002 42 H -0.003 1.003 43 H 0.070 0.930 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 6.449 18.659 15.079 24.842 hybrid contribution -0.240 -1.111 -0.493 1.239 sum 6.209 17.547 14.586 23.648 Atomic orbital electron populations 1.20843 0.89596 1.03435 1.03173 1.20229 0.97549 0.92758 0.99028 1.21465 0.94851 0.97895 0.99321 1.21513 0.94459 0.98531 0.98545 1.21330 1.00807 0.91460 1.00243 1.19656 0.93897 0.93739 1.02975 1.19888 0.93139 0.97657 0.82900 0.88893 1.19853 0.84231 0.75374 0.89228 1.90750 1.76916 1.51585 1.27050 1.45267 1.05564 1.72376 1.11868 1.22152 0.95245 1.04802 0.81082 1.22818 0.82746 0.97032 1.02604 1.48504 1.25020 1.46403 1.14488 1.21650 0.85424 0.76833 0.85279 1.90671 1.27370 1.46578 1.81589 1.21668 0.99685 1.02999 0.90598 1.18707 0.94501 0.93056 0.93367 1.21710 1.08756 1.26827 1.00339 0.89968 1.26148 0.96208 0.95138 1.03007 1.70194 1.24000 1.29746 1.34088 0.85327 0.78063 0.79361 0.77529 1.19793 1.21628 1.17469 1.21072 0.93820 0.98522 1.00962 0.90010 0.89542 0.92359 0.83035 0.82319 0.83793 0.74975 0.83713 0.90142 0.87827 0.84836 0.87109 0.86745 1.00182 1.00307 0.92996 0.87728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.16 10.01 71.24 0.71 -1.45 16 2 C -0.10 -2.30 5.88 -19.86 -0.12 -2.41 16 3 C -0.12 -2.24 9.70 22.27 0.22 -2.02 16 4 C -0.11 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.12 -2.56 8.30 22.27 0.18 -2.38 16 6 C -0.10 -2.88 5.01 -19.87 -0.10 -2.98 16 7 C 0.17 5.28 2.76 43.31 0.12 5.40 16 8 H 0.09 3.58 6.97 -2.38 -0.02 3.56 16 9 C 0.53 14.60 6.56 87.79 0.58 15.18 16 10 O -0.58 -20.58 17.80 -3.03 -0.05 -20.64 16 11 N -0.70 -11.89 5.42 -467.09 -2.53 -14.42 16 12 C 0.09 0.93 7.34 86.54 0.63 1.56 16 13 C 0.07 1.05 6.00 86.18 0.52 1.57 16 14 N -0.61 -17.13 2.62 -802.76 -2.10 -19.23 16 15 C 0.52 20.01 7.73 87.66 0.68 20.69 16 16 O -0.58 -29.38 15.54 -3.06 -0.05 -29.42 16 17 C -0.11 -4.13 4.02 29.85 0.12 -4.01 16 18 C 0.04 2.25 4.26 29.85 0.13 2.37 16 19 C -0.54 -29.51 9.11 25.60 0.23 -29.28 16 20 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 21 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 22 N -0.94 -59.30 13.29 21.45 0.28 -59.02 16 23 Si 0.97 43.15 29.54 68.60 2.03 45.17 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 27 C -0.12 -3.76 9.33 22.27 0.21 -3.55 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 30 H 0.06 1.22 8.09 -2.39 -0.02 1.20 16 31 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 33 H 0.14 2.25 5.59 -2.91 -0.02 2.23 16 34 H 0.41 5.43 8.80 -92.71 -0.82 4.61 16 35 H 0.15 0.13 8.14 -2.38 -0.02 0.11 16 36 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.10 1.21 5.10 -2.39 -0.01 1.20 16 38 H 0.13 1.61 6.07 -2.39 -0.01 1.59 16 39 H 0.11 3.52 7.84 -2.39 -0.02 3.50 16 40 H 0.11 3.53 7.88 -2.39 -0.02 3.51 16 41 H -0.02 -1.26 8.10 -2.39 -0.02 -1.28 16 42 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.10 3.43 7.95 -2.91 -0.02 3.40 16 Total: -1.00 -87.86 362.18 2.58 -85.28 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.21 Total: 15.34 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.80 Total: -3.07 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -4.35 Total: -92.67 kcal Atomic # 8 Polarization: -49.96 SS G_CDS: -0.10 Total: -50.06 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Total: -87.86 2.58 -85.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598425313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.578 kcal (2) G-P(sol) polarization free energy of solvation -87.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds