Wall clock time and date at job start Tue Mar 31 2020 11:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53777 * 113.61223 * 2 1 4 4 C 1.53959 * 87.01861 * 220.04653 * 3 2 1 5 5 C 1.52999 * 113.74256 * 139.94465 * 4 3 2 6 6 N 1.46502 * 109.47249 * 87.40247 * 5 4 3 7 7 C 1.34780 * 120.00109 * 179.97438 * 6 5 4 8 8 O 1.21354 * 119.99892 * 0.02562 * 7 6 5 9 9 C 1.49354 * 119.99794 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99961 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99839 * 180.02562 * 9 7 6 12 12 C 1.39735 * 120.00346 * 174.89362 * 11 9 7 13 13 C 1.39343 * 119.96080 * 145.76292 * 12 11 9 14 14 C 1.38469 * 120.42872 * 179.97438 * 13 12 11 15 15 C 1.37696 * 120.32699 * 359.97438 * 14 13 12 16 16 C 1.40751 * 119.89833 * 0.02562 * 15 14 13 17 17 C 1.41400 * 120.20943 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00398 * 205.18408 * 17 16 15 19 19 C 1.39930 * 120.00098 * 25.18949 * 17 16 15 20 20 N 1.30835 * 119.99943 * 16.78292 * 19 17 16 21 21 Si 1.86801 * 120.00387 * 196.79213 * 19 17 16 22 22 H 1.48505 * 109.47344 * 59.98955 * 21 19 17 23 23 H 1.48498 * 109.47459 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46792 * 299.99917 * 21 19 17 25 25 C 1.38311 * 119.95296 * 325.48785 * 12 11 9 26 26 C 1.53777 * 113.61408 * 262.39383 * 2 1 3 27 27 H 1.09001 * 109.47646 * 159.13707 * 1 2 3 28 28 H 1.09002 * 109.47261 * 39.13304 * 1 2 3 29 29 H 1.09004 * 109.47331 * 279.14066 * 1 2 3 30 30 H 1.09000 * 112.84800 * 131.19273 * 2 1 3 31 31 H 1.08996 * 113.61784 * 334.56311 * 3 2 1 32 32 H 1.09004 * 113.61753 * 105.47224 * 3 2 1 33 33 H 1.09005 * 113.53905 * 270.81178 * 4 3 2 34 34 H 1.09000 * 109.47274 * 207.40564 * 5 4 3 35 35 H 1.09001 * 109.47261 * 327.40608 * 5 4 3 36 36 H 0.96997 * 119.99659 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00131 * 354.88576 * 11 9 7 38 38 H 1.07995 * 119.78264 * 359.95346 * 13 12 11 39 39 H 1.07996 * 119.83585 * 179.97438 * 14 13 12 40 40 H 1.07996 * 120.04929 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99843 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.16061 * 359.97438 * 25 12 11 43 43 H 1.09005 * 113.61237 * 254.52944 * 26 2 1 44 44 H 1.08999 * 113.61740 * 25.34762 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4090 0.0000 4 6 3.1923 0.8642 -0.9892 5 6 3.5475 1.8423 -2.1109 6 7 4.6310 2.7225 -1.6664 7 6 5.1120 3.6705 -2.4949 8 8 4.6473 3.7953 -3.6089 9 6 6.2170 4.5674 -2.0418 10 8 6.6822 4.4422 -0.9277 11 7 6.6977 5.5157 -2.8701 12 6 7.6560 6.4235 -2.4116 13 6 8.6432 6.8898 -3.2774 14 6 9.5972 7.7899 -2.8335 15 6 9.5803 8.2348 -1.5305 16 6 8.5894 7.7727 -0.6442 17 6 8.5655 8.2256 0.6951 18 1 8.1112 7.6171 1.4630 19 6 9.1304 9.4624 1.0256 20 7 9.3808 10.3390 0.0871 21 14 9.5274 9.8620 2.8067 22 1 10.5011 8.8711 3.3312 23 1 10.1140 11.2237 2.8897 24 1 8.2828 9.8086 3.6151 25 6 7.6199 6.8624 -1.1005 26 6 2.1459 -0.1865 -1.3966 27 1 -0.3634 -0.9603 -0.3660 28 1 -0.3634 0.7971 -0.6486 29 1 -0.3634 0.1633 1.0146 30 1 1.9532 -0.6615 0.7559 31 1 1.4945 2.1704 -0.4289 32 1 2.5650 1.7025 0.9625 33 1 4.0711 0.4399 -0.5036 34 1 3.8698 1.2850 -2.9904 35 1 2.6722 2.4417 -2.3611 36 1 5.0027 2.6224 -0.7760 37 1 6.3785 5.5680 -3.7846 38 1 8.6646 6.5467 -4.3012 39 1 10.3583 8.1447 -3.5126 40 1 10.3263 8.9371 -1.1892 41 1 9.7727 11.1962 0.3162 42 1 6.8523 6.5055 -0.4297 43 1 2.5650 -1.1795 -1.5599 44 1 1.4939 0.1365 -2.2081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598667285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:24 Heat of formation + Delta-G solvation = -40.058732 kcal Electronic energy + Delta-G solvation = -25042.143717 eV Core-core repulsion = 21345.372488 eV Total energy + Delta-G solvation = -3696.771229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63277 -39.66052 -38.54424 -37.11737 -35.17808 -34.31233 -33.02734 -30.72876 -29.87146 -28.57963 -27.21832 -26.03570 -25.35720 -24.11057 -21.59830 -21.22760 -20.86345 -20.00636 -19.48367 -18.36301 -17.50772 -16.59342 -16.16432 -15.79051 -15.53136 -15.29964 -14.98604 -14.67536 -14.47837 -14.17019 -13.89513 -13.68073 -13.41486 -13.05074 -12.92738 -12.80713 -12.67477 -12.20798 -11.87091 -11.73561 -11.54359 -11.37355 -11.27449 -11.13176 -10.99186 -10.91073 -10.57742 -10.51581 -10.50304 -10.10949 -9.70331 -9.44443 -9.31474 -9.10342 -9.01238 -7.49810 -6.99985 -6.74610 -4.37004 1.54422 2.50661 2.77077 2.93414 3.07572 3.10831 3.20729 3.57210 3.85066 3.94688 4.16734 4.23179 4.31943 4.42015 4.61825 4.73111 4.86199 5.01681 5.13877 5.24946 5.36749 5.41166 5.44645 5.45779 5.60917 5.66786 5.71487 5.76755 5.94779 6.10624 6.20848 6.21236 6.35754 6.60343 6.83982 6.97794 7.01277 7.11526 7.22530 7.44462 7.64733 7.81431 7.90452 8.03936 8.08889 8.16590 8.45339 8.63721 8.89469 8.93762 10.19127 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.002543 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.820401 B =11009.022254 C =12465.744292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.134 4.134 4 C -0.127 4.127 5 C 0.128 3.872 6 N -0.702 5.702 7 C 0.511 3.489 8 O -0.525 6.525 9 C 0.496 3.504 10 O -0.500 6.500 11 N -0.633 5.633 12 C 0.144 3.856 13 C -0.255 4.255 14 C -0.091 4.091 15 C -0.168 4.168 16 C 0.119 3.881 17 C -0.458 4.458 18 H 0.079 0.921 19 C 0.075 3.925 20 N -0.794 5.794 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.209 4.209 26 C -0.126 4.126 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.070 0.930 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.073 0.927 36 H 0.414 0.586 37 H 0.410 0.590 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.281 0.719 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.276 -16.102 -1.491 20.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.134 4.134 3 C -0.171 4.171 4 C -0.145 4.145 5 C 0.005 3.995 6 N -0.356 5.356 7 C 0.292 3.708 8 O -0.402 6.402 9 C 0.277 3.723 10 O -0.374 6.374 11 N -0.278 5.278 12 C 0.053 3.947 13 C -0.276 4.276 14 C -0.111 4.111 15 C -0.188 4.188 16 C 0.116 3.884 17 C -0.487 4.487 18 H 0.097 0.903 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.734 3.266 22 H -0.188 1.188 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.230 4.230 26 C -0.164 4.164 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.089 0.911 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.250 0.750 37 H 0.246 0.754 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.138 0.862 41 H 0.092 0.908 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -12.243 -15.870 -1.524 20.101 hybrid contribution 0.181 0.265 0.657 0.731 sum -12.062 -15.604 -0.867 19.742 Atomic orbital electron populations 1.21725 0.94761 1.01726 1.01802 1.22451 0.95722 0.97678 0.97593 1.23186 0.97593 0.96652 0.99678 1.22829 0.98157 0.96846 0.96710 1.21484 0.89688 0.91212 0.97084 1.45754 1.37314 1.33731 1.18754 1.20315 0.83731 0.81567 0.85226 1.90736 1.59605 1.69945 1.19867 1.19970 0.84072 0.82122 0.86180 1.90812 1.57918 1.69151 1.19521 1.43135 1.40042 1.29370 1.15280 1.17450 0.90162 0.92166 0.94927 1.20071 1.00394 1.08829 0.98332 1.20475 0.97329 0.97184 0.96065 1.21386 1.00566 1.03789 0.93016 1.17472 0.88750 0.88940 0.93217 1.19539 1.33022 1.02159 0.94017 0.90335 1.25911 0.93051 0.95659 0.99596 1.69815 1.31543 1.05725 1.34869 0.86344 0.79814 0.77993 0.82431 1.18783 1.20353 1.18999 1.20967 1.02318 1.05853 0.93856 1.22972 0.97310 0.98658 0.97421 0.92607 0.92527 0.92636 0.89256 0.89705 0.91104 0.88299 0.90941 0.90888 0.74962 0.75371 0.88977 0.88803 0.86180 0.90808 0.87600 0.91165 0.89645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 9.69 37.16 0.36 -0.46 16 2 C -0.12 -0.71 4.35 -89.81 -0.39 -1.10 16 3 C -0.13 -0.95 7.20 -25.83 -0.19 -1.14 16 4 C -0.13 -0.90 3.75 -89.72 -0.34 -1.24 16 5 C 0.13 1.20 5.52 -4.04 -0.02 1.18 16 6 N -0.70 -8.37 5.55 -60.76 -0.34 -8.71 16 7 C 0.51 7.85 7.89 -11.63 -0.09 7.76 16 8 O -0.53 -8.81 16.48 5.49 0.09 -8.72 16 9 C 0.50 9.13 7.61 -11.63 -0.09 9.05 16 10 O -0.50 -10.46 14.23 5.48 0.08 -10.38 16 11 N -0.63 -12.08 5.32 -10.34 -0.06 -12.14 16 12 C 0.14 3.30 6.25 -83.82 -0.52 2.78 16 13 C -0.26 -5.65 9.97 -39.09 -0.39 -6.04 16 14 C -0.09 -2.12 10.01 -39.69 -0.40 -2.52 16 15 C -0.17 -4.36 8.69 -38.83 -0.34 -4.70 16 16 C 0.12 3.24 5.57 -106.85 -0.59 2.65 16 17 C -0.46 -12.37 9.05 -37.75 -0.34 -12.71 16 18 H 0.08 2.07 7.90 -52.48 -0.41 1.66 16 19 C 0.08 1.91 5.16 -17.34 -0.09 1.82 16 20 N -0.79 -20.48 10.94 55.55 0.61 -19.88 16 21 Si 0.91 18.84 29.59 -169.99 -5.03 13.81 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 25 C -0.21 -5.35 8.39 -38.66 -0.32 -5.68 16 26 C -0.13 -0.76 7.20 -25.92 -0.19 -0.95 16 27 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.33 7.98 -51.93 -0.41 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 36 H 0.41 4.62 7.94 -40.82 -0.32 4.29 16 37 H 0.41 6.80 8.30 -40.82 -0.34 6.46 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 40 H 0.12 3.19 6.17 -52.49 -0.32 2.87 16 41 H 0.28 6.59 8.30 -40.82 -0.34 6.26 16 42 H 0.11 2.75 6.48 -52.48 -0.34 2.41 16 43 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.51 8.06 -51.93 -0.42 0.09 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -29.88 369.58 -9.34 -39.22 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.32 Total: 12.54 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -3.94 Total: -11.32 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.22 Total: -40.72 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: 0.17 Total: -19.10 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.88 -9.34 -39.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598667285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.834 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds