Wall clock time and date at job start Tue Mar 31 2020 11:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53777 * 113.61223 * 2 1 4 4 C 1.53959 * 87.01861 * 220.04653 * 3 2 1 5 5 C 1.52999 * 113.74256 * 139.94465 * 4 3 2 6 6 N 1.46502 * 109.47249 * 87.40247 * 5 4 3 7 7 C 1.34780 * 120.00109 * 179.97438 * 6 5 4 8 8 O 1.21354 * 119.99892 * 0.02562 * 7 6 5 9 9 C 1.49354 * 119.99794 * 180.02562 * 7 6 5 10 10 O 1.21375 * 119.99961 * 0.02562 * 9 7 6 11 11 N 1.34774 * 119.99839 * 180.02562 * 9 7 6 12 12 C 1.39735 * 120.00346 * 174.89362 * 11 9 7 13 13 C 1.39343 * 119.96080 * 145.76292 * 12 11 9 14 14 C 1.38469 * 120.42872 * 179.97438 * 13 12 11 15 15 C 1.37696 * 120.32699 * 359.97438 * 14 13 12 16 16 C 1.40751 * 119.89833 * 0.02562 * 15 14 13 17 17 C 1.41400 * 120.20943 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00398 * 205.18408 * 17 16 15 19 19 C 1.39930 * 120.00098 * 25.18949 * 17 16 15 20 20 N 1.30835 * 119.99943 * 16.78292 * 19 17 16 21 21 Si 1.86801 * 120.00387 * 196.79213 * 19 17 16 22 22 H 1.48505 * 109.47344 * 59.98955 * 21 19 17 23 23 H 1.48498 * 109.47459 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46792 * 299.99917 * 21 19 17 25 25 C 1.38311 * 119.95296 * 325.48785 * 12 11 9 26 26 C 1.53777 * 113.61408 * 262.39383 * 2 1 3 27 27 H 1.09001 * 109.47646 * 159.13707 * 1 2 3 28 28 H 1.09002 * 109.47261 * 39.13304 * 1 2 3 29 29 H 1.09004 * 109.47331 * 279.14066 * 1 2 3 30 30 H 1.09000 * 112.84800 * 131.19273 * 2 1 3 31 31 H 1.08996 * 113.61784 * 334.56311 * 3 2 1 32 32 H 1.09004 * 113.61753 * 105.47224 * 3 2 1 33 33 H 1.09005 * 113.53905 * 270.81178 * 4 3 2 34 34 H 1.09000 * 109.47274 * 207.40564 * 5 4 3 35 35 H 1.09001 * 109.47261 * 327.40608 * 5 4 3 36 36 H 0.96997 * 119.99659 * 0.02562 * 6 5 4 37 37 H 0.97003 * 120.00131 * 354.88576 * 11 9 7 38 38 H 1.07995 * 119.78264 * 359.95346 * 13 12 11 39 39 H 1.07996 * 119.83585 * 179.97438 * 14 13 12 40 40 H 1.07996 * 120.04929 * 180.02562 * 15 14 13 41 41 H 0.96999 * 119.99843 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.16061 * 359.97438 * 25 12 11 43 43 H 1.09005 * 113.61237 * 254.52944 * 26 2 1 44 44 H 1.08999 * 113.61740 * 25.34762 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1459 1.4090 0.0000 4 6 3.1923 0.8642 -0.9892 5 6 3.5475 1.8423 -2.1109 6 7 4.6310 2.7225 -1.6664 7 6 5.1120 3.6705 -2.4949 8 8 4.6473 3.7953 -3.6089 9 6 6.2170 4.5674 -2.0418 10 8 6.6822 4.4422 -0.9277 11 7 6.6977 5.5157 -2.8701 12 6 7.6560 6.4235 -2.4116 13 6 8.6432 6.8898 -3.2774 14 6 9.5972 7.7899 -2.8335 15 6 9.5803 8.2348 -1.5305 16 6 8.5894 7.7727 -0.6442 17 6 8.5655 8.2256 0.6951 18 1 8.1112 7.6171 1.4630 19 6 9.1304 9.4624 1.0256 20 7 9.3808 10.3390 0.0871 21 14 9.5274 9.8620 2.8067 22 1 10.5011 8.8711 3.3312 23 1 10.1140 11.2237 2.8897 24 1 8.2828 9.8086 3.6151 25 6 7.6199 6.8624 -1.1005 26 6 2.1459 -0.1865 -1.3966 27 1 -0.3634 -0.9603 -0.3660 28 1 -0.3634 0.7971 -0.6486 29 1 -0.3634 0.1633 1.0146 30 1 1.9532 -0.6615 0.7559 31 1 1.4945 2.1704 -0.4289 32 1 2.5650 1.7025 0.9625 33 1 4.0711 0.4399 -0.5036 34 1 3.8698 1.2850 -2.9904 35 1 2.6722 2.4417 -2.3611 36 1 5.0027 2.6224 -0.7760 37 1 6.3785 5.5680 -3.7846 38 1 8.6646 6.5467 -4.3012 39 1 10.3583 8.1447 -3.5126 40 1 10.3263 8.9371 -1.1892 41 1 9.7727 11.1962 0.3162 42 1 6.8523 6.5055 -0.4297 43 1 2.5650 -1.1795 -1.5599 44 1 1.4939 0.1365 -2.2081 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598667285.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:20 Heat of formation + Delta-G solvation = -57.965104 kcal Electronic energy + Delta-G solvation = -25042.920196 eV Core-core repulsion = 21345.372488 eV Total energy + Delta-G solvation = -3697.547708 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.99771 -40.54472 -39.78407 -38.85332 -36.59487 -35.72807 -34.79553 -31.79573 -31.40414 -30.29790 -28.12599 -27.28841 -26.56907 -25.43453 -23.04558 -22.61898 -22.17742 -21.26291 -20.32676 -19.82687 -19.15996 -17.90961 -17.45331 -17.10106 -16.82298 -16.66205 -16.47983 -16.26715 -15.66330 -15.34659 -14.99848 -14.69439 -14.60197 -14.53961 -14.05044 -14.00949 -13.57765 -13.44291 -13.30361 -13.07528 -13.03598 -12.87941 -12.69112 -12.42347 -12.20143 -12.02625 -11.90259 -11.55523 -11.51777 -11.23116 -11.11338 -11.04047 -10.92743 -10.59841 -10.32687 -9.43453 -8.84874 -8.63407 -6.38156 0.12287 0.94656 1.03728 1.30396 1.37762 1.48869 1.53435 2.10552 2.21036 2.61269 2.72230 3.34193 3.60268 3.64530 3.70350 3.76652 3.87506 4.24678 4.41112 4.43226 4.58460 4.61143 4.65443 4.76885 4.87363 4.89738 4.92247 4.95157 4.99088 5.05471 5.07416 5.10595 5.14221 5.21108 5.28023 5.28629 5.46952 5.58804 5.65819 5.76736 5.96241 6.03952 6.07703 6.27177 6.37495 6.62797 6.72521 6.87885 6.95004 7.00683 8.32307 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016315 B = 0.002543 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.820401 B =11009.022254 C =12465.744292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C -0.139 4.139 4 C -0.123 4.123 5 C 0.127 3.873 6 N -0.685 5.685 7 C 0.520 3.480 8 O -0.538 6.538 9 C 0.494 3.506 10 O -0.528 6.528 11 N -0.629 5.629 12 C 0.150 3.850 13 C -0.247 4.247 14 C -0.089 4.089 15 C -0.193 4.193 16 C 0.089 3.911 17 C -0.499 4.499 18 H 0.068 0.932 19 C 0.037 3.963 20 N -0.821 5.821 21 Si 0.982 3.018 22 H -0.261 1.261 23 H -0.263 1.263 24 H -0.262 1.262 25 C -0.233 4.233 26 C -0.120 4.120 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.419 0.581 37 H 0.424 0.576 38 H 0.130 0.870 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.290 0.710 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.732 -17.277 -2.063 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.131 4.131 3 C -0.176 4.176 4 C -0.141 4.141 5 C 0.005 3.995 6 N -0.337 5.337 7 C 0.299 3.701 8 O -0.416 6.416 9 C 0.277 3.723 10 O -0.403 6.403 11 N -0.276 5.276 12 C 0.057 3.943 13 C -0.268 4.268 14 C -0.108 4.108 15 C -0.213 4.213 16 C 0.087 3.913 17 C -0.528 4.528 18 H 0.086 0.914 19 C -0.178 4.178 20 N -0.447 5.447 21 Si 0.803 3.197 22 H -0.186 1.186 23 H -0.187 1.187 24 H -0.186 1.186 25 C -0.254 4.254 26 C -0.157 4.157 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.112 0.888 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.091 0.909 36 H 0.256 0.744 37 H 0.263 0.737 38 H 0.148 0.852 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.098 0.902 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -12.731 -17.080 -2.117 21.408 hybrid contribution 0.257 0.536 0.738 0.948 sum -12.474 -16.544 -1.379 20.765 Atomic orbital electron populations 1.21724 0.94449 1.02029 1.01814 1.22444 0.95993 0.96885 0.97811 1.23217 0.97714 0.97284 0.99417 1.22833 0.98628 0.96673 0.95994 1.21708 0.88544 0.91068 0.98175 1.45813 1.37025 1.32554 1.18349 1.19676 0.83103 0.81873 0.85402 1.90737 1.59986 1.70548 1.20356 1.20589 0.84230 0.82011 0.85516 1.90802 1.58882 1.69913 1.20743 1.43052 1.39498 1.28909 1.16116 1.17523 0.90764 0.91962 0.94044 1.20485 0.99014 1.07495 0.99833 1.20836 0.98042 0.96526 0.95374 1.21367 1.00666 1.04822 0.94402 1.17821 0.89675 0.89888 0.93954 1.19727 1.35374 1.03501 0.94203 0.91391 1.26723 0.92162 0.94765 1.04159 1.69850 1.31652 1.06216 1.36942 0.85257 0.79570 0.78313 0.76582 1.18577 1.18655 1.18634 1.20943 1.02381 1.06905 0.95199 1.22966 0.96695 0.98643 0.97435 0.91917 0.92773 0.92653 0.88778 0.90161 0.91550 0.87706 0.90461 0.90937 0.74421 0.73704 0.85187 0.85648 0.87496 0.89922 0.89131 0.90215 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.69 71.98 0.70 -0.73 16 2 C -0.11 -1.19 4.35 -10.27 -0.04 -1.24 16 3 C -0.14 -1.81 7.20 31.18 0.22 -1.58 16 4 C -0.12 -1.53 3.75 -10.21 -0.04 -1.57 16 5 C 0.13 2.17 5.52 86.38 0.48 2.65 16 6 N -0.68 -15.52 5.55 -464.50 -2.58 -18.10 16 7 C 0.52 15.44 7.89 87.24 0.69 16.13 16 8 O -0.54 -17.25 16.48 -3.26 -0.05 -17.30 16 9 C 0.49 18.09 7.61 87.24 0.66 18.75 16 10 O -0.53 -22.44 14.23 -3.32 -0.05 -22.49 16 11 N -0.63 -23.52 5.32 -304.98 -1.62 -25.14 16 12 C 0.15 6.81 6.25 38.16 0.24 7.05 16 13 C -0.25 -10.52 9.97 22.59 0.23 -10.29 16 14 C -0.09 -4.04 10.01 22.20 0.22 -3.82 16 15 C -0.19 -10.24 8.69 22.76 0.20 -10.04 16 16 C 0.09 5.06 5.57 -21.31 -0.12 4.94 16 17 C -0.50 -28.19 9.05 23.46 0.21 -27.98 16 18 H 0.07 3.81 7.90 -2.91 -0.02 3.79 16 19 C 0.04 1.92 5.16 85.25 0.44 2.36 16 20 N -0.82 -43.20 10.94 21.82 0.24 -42.96 16 21 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 22 H -0.26 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 24 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 25 C -0.23 -12.34 8.39 22.86 0.19 -12.15 16 26 C -0.12 -1.20 7.20 31.12 0.22 -0.97 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.56 7.98 -2.39 -0.02 0.54 16 29 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.08 1.12 7.75 -2.39 -0.02 1.10 16 32 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.10 1.23 8.14 -2.38 -0.02 1.21 16 34 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.30 7.86 -2.39 -0.02 1.28 16 36 H 0.42 8.95 7.94 -92.71 -0.74 8.21 16 37 H 0.42 13.36 8.30 -92.71 -0.77 12.59 16 38 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 39 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 40 H 0.11 5.86 6.17 -2.91 -0.02 5.84 16 41 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 42 H 0.09 4.95 6.48 -2.91 -0.02 4.94 16 43 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 44 H 0.09 0.85 8.06 -2.39 -0.02 0.83 16 Total: -1.00 -65.94 369.58 2.00 -63.95 By element: Atomic # 1 Polarization: 39.86 SS G_CDS: -0.47 Total: 39.39 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 4.50 Total: -18.50 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -3.96 Total: -86.20 kcal Atomic # 8 Polarization: -39.69 SS G_CDS: -0.10 Total: -39.79 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -65.94 2.00 -63.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598667285.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.981 kcal (2) G-P(sol) polarization free energy of solvation -65.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds