Wall clock time and date at job start Tue Mar 31 2020 10:49:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47210 * 300.00242 * 3 2 1 6 6 H 1.48501 * 109.47358 * 60.00454 * 3 2 1 7 7 C 1.37882 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99465 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00458 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47506 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00175 * 170.00259 * 10 9 7 12 12 C 1.53237 * 109.34150 * 187.25649 * 11 10 9 13 13 N 1.47075 * 108.52346 * 306.17086 * 12 11 10 14 14 S 1.65603 * 120.88526 * 231.18722 * 13 12 11 15 15 O 1.42102 * 104.27650 * 333.92690 * 14 13 12 16 16 O 1.42098 * 104.27898 * 206.06749 * 14 13 12 17 17 C 1.81408 * 104.44779 * 89.99456 * 14 13 12 18 18 C 1.53000 * 109.46799 * 180.02562 * 17 14 13 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 14 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.47081 * 118.23929 * 51.45476 * 13 12 11 24 24 C 1.46894 * 111.00143 * 294.30759 * 10 9 7 25 25 H 0.97000 * 119.99236 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46701 * 60.00120 * 9 7 2 27 27 H 1.08997 * 109.47620 * 300.00734 * 9 7 2 28 28 H 1.09001 * 109.49611 * 67.29501 * 11 10 9 29 29 H 1.08998 * 109.49849 * 307.21452 * 11 10 9 30 30 H 1.09001 * 109.63032 * 186.45876 * 12 11 10 31 31 H 1.09001 * 109.62988 * 65.88128 * 12 11 10 32 32 H 1.08992 * 109.47429 * 300.00345 * 17 14 13 33 33 H 1.09002 * 109.47398 * 300.00340 * 18 17 14 34 34 H 1.09001 * 109.47194 * 60.00520 * 18 17 14 35 35 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 37 37 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 39 39 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 40 40 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 43 43 H 1.09002 * 109.62925 * 68.25029 * 23 13 12 44 44 H 1.08993 * 109.63236 * 188.83858 * 23 13 12 45 45 H 1.09002 * 109.49648 * 292.70076 * 24 10 9 46 46 H 1.09006 * 109.49688 * 52.78310 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5210 -4.8935 0.2375 12 6 2.5635 -6.0033 0.4104 13 7 3.4614 -5.9864 -0.7543 14 16 3.7691 -7.3700 -1.6106 15 8 3.5624 -8.4165 -0.6717 16 8 5.0474 -7.1470 -2.1896 17 6 2.4865 -7.4032 -2.8931 18 6 2.6650 -8.6506 -3.7608 19 6 1.5837 -8.6783 -4.8428 20 6 1.7042 -7.4280 -5.7164 21 6 1.5258 -6.1805 -4.8487 22 6 2.6071 -6.1528 -3.7666 23 6 4.0837 -4.7092 -1.1348 24 6 2.9767 -3.6492 -1.2503 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 0.8794 -5.1264 -0.6123 29 1 0.9158 -4.8192 1.1410 30 1 2.0629 -6.9695 0.4728 31 1 3.1391 -5.8266 1.3190 32 1 1.5033 -7.4255 -2.4233 33 1 3.6483 -8.6287 -4.2307 34 1 2.5795 -9.5414 -3.1384 35 1 1.7105 -9.5672 -5.4607 36 1 0.6003 -8.7000 -4.3732 37 1 0.9336 -7.4475 -6.4870 38 1 2.6876 -7.4063 -6.1859 39 1 0.5423 -6.2021 -4.3791 40 1 1.6121 -5.2897 -5.4710 41 1 2.4802 -5.2639 -3.1489 42 1 3.5905 -6.1312 -4.2363 43 1 4.8026 -4.4104 -0.3718 44 1 4.5885 -4.8193 -2.0945 45 1 2.3149 -3.8994 -2.0796 46 1 3.4272 -2.6723 -1.4260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:37 Heat of formation + Delta-G solvation = -80.628293 kcal Electronic energy + Delta-G solvation = -26385.155507 eV Core-core repulsion = 22822.069000 eV Total energy + Delta-G solvation = -3563.086506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -38.72527 -38.30718 -37.15322 -35.95176 -34.42890 -32.34911 -31.35564 -31.17073 -30.67846 -27.85385 -25.12081 -23.39629 -23.27436 -23.03772 -21.78042 -20.32409 -19.97807 -18.61526 -17.58445 -16.91370 -16.44000 -15.96893 -15.38155 -14.87935 -14.55303 -14.53871 -14.44235 -14.31124 -14.16269 -13.78870 -13.62272 -13.36601 -12.90522 -12.53616 -12.45169 -12.22160 -12.10432 -12.01471 -11.94000 -11.76390 -11.48637 -11.44836 -11.28360 -11.07031 -10.86395 -10.83306 -10.76935 -10.63957 -10.47623 -10.38900 -10.11216 -9.84595 -9.30680 -8.78359 -8.49316 -7.31965 -6.08916 -4.10502 0.23630 2.63165 3.27342 3.35468 3.39809 3.79050 3.97578 4.18295 4.37206 4.40886 4.55924 4.71386 4.81153 4.86763 4.94929 5.00036 5.13951 5.20585 5.21562 5.26992 5.38631 5.47739 5.51464 5.58469 5.63512 5.65199 5.70139 5.78321 5.80808 5.84973 5.93697 5.94883 6.03517 6.12527 6.18524 6.31082 6.45177 6.52534 6.74173 7.20559 7.24774 7.73193 8.00294 8.10774 8.46232 8.97502 9.54439 11.01893 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.003948 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.677169 B = 7091.032666 C = 7819.056444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.193 3.807 10 N -0.532 5.532 11 C 0.041 3.959 12 C 0.129 3.871 13 N -0.996 5.996 14 S 2.606 3.394 15 O -0.961 6.961 16 O -0.956 6.956 17 C -0.588 4.588 18 C -0.107 4.107 19 C -0.109 4.109 20 C -0.122 4.122 21 C -0.111 4.111 22 C -0.111 4.111 23 C 0.124 3.876 24 C 0.048 3.952 25 H 0.261 0.739 26 H -0.009 1.009 27 H 0.031 0.969 28 H 0.025 0.975 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.028 0.972 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.987 -16.157 -9.007 18.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.547 4.547 8 H 0.083 0.917 9 C 0.069 3.931 10 N -0.257 5.257 11 C -0.090 4.090 12 C 0.003 3.997 13 N -0.834 5.834 14 S 2.701 3.299 15 O -0.951 6.951 16 O -0.946 6.946 17 C -0.697 4.697 18 C -0.146 4.146 19 C -0.148 4.148 20 C -0.160 4.160 21 C -0.150 4.150 22 C -0.149 4.149 23 C -0.001 4.001 24 C -0.081 4.081 25 H 0.070 0.930 26 H 0.008 0.992 27 H 0.049 0.951 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.152 0.848 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.088 0.912 41 H 0.105 0.895 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.103 0.897 45 H 0.045 0.955 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.879 -16.574 -8.416 18.988 hybrid contribution -0.983 1.141 -0.863 1.736 sum 2.895 -15.432 -9.279 18.238 Atomic orbital electron populations 1.69968 1.06098 1.26729 1.50974 1.24988 0.94845 0.99357 0.95362 0.86452 0.80118 0.83399 0.77510 1.19591 1.21156 1.21021 1.21190 0.93559 0.89857 1.50107 0.91701 1.19732 0.89993 0.87267 0.96149 1.61972 1.27880 1.02491 1.33386 1.22414 0.94797 0.91031 1.00736 1.21559 0.91355 0.98684 0.88088 1.57673 1.60280 1.24395 1.41090 1.05226 0.76127 0.73283 0.75262 1.93566 1.87056 1.55374 1.59133 1.93561 1.36470 1.84800 1.79770 1.30561 1.19999 1.03710 1.15437 1.21352 1.01202 0.94406 0.97614 1.21432 0.98540 0.98212 0.96608 1.21576 1.02056 0.94541 0.97806 1.21439 0.98686 0.98054 0.96786 1.21499 1.01123 0.94643 0.97594 1.21779 0.95609 0.81896 1.00800 1.22525 0.95155 0.99292 0.91164 0.92958 0.99160 0.95086 0.95698 0.90144 0.89935 0.90288 0.84781 0.90483 0.90608 0.91435 0.91553 0.91755 0.91739 0.91648 0.91194 0.89536 0.90258 0.90296 0.89749 0.95454 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.84 13.29 55.43 0.74 -25.11 16 2 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 3 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -13.57 8.41 -34.44 -0.29 -13.86 16 8 H 0.06 1.71 7.12 -52.49 -0.37 1.34 16 9 C 0.19 4.74 4.72 -4.98 -0.02 4.71 16 10 N -0.53 -10.51 4.62 -235.48 -1.09 -11.60 16 11 C 0.04 0.66 5.62 -3.71 -0.02 0.64 16 12 C 0.13 1.80 6.46 -3.61 -0.02 1.78 16 13 N -1.00 -13.96 3.02 -112.97 -0.34 -14.30 16 14 S 2.61 34.79 4.85 -107.50 -0.52 34.27 16 15 O -0.96 -15.05 16.79 -57.54 -0.97 -16.01 16 16 O -0.96 -14.89 16.66 -57.54 -0.96 -15.84 16 17 C -0.59 -6.12 2.85 -26.73 -0.08 -6.19 16 18 C -0.11 -0.98 5.21 -26.73 -0.14 -1.12 16 19 C -0.11 -0.87 5.92 -26.73 -0.16 -1.03 16 20 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 21 C -0.11 -1.05 5.92 -26.73 -0.16 -1.21 16 22 C -0.11 -1.16 4.97 -26.73 -0.13 -1.30 16 23 C 0.12 1.82 5.63 -3.36 -0.02 1.80 16 24 C 0.05 0.84 5.33 -3.46 -0.02 0.82 16 25 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 26 H -0.01 -0.25 8.13 -51.93 -0.42 -0.67 16 27 H 0.03 0.82 7.97 -51.93 -0.41 0.40 16 28 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 1.28 7.99 -51.93 -0.41 0.87 16 30 H 0.08 1.00 7.19 -51.93 -0.37 0.63 16 31 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.13 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.99 4.60 -51.93 -0.24 0.76 16 42 H 0.08 0.81 8.11 -51.93 -0.42 0.39 16 43 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.08 1.09 7.18 -51.93 -0.37 0.72 16 45 H 0.03 0.46 5.93 -51.93 -0.31 0.15 16 46 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -32.00 359.42 -11.95 -43.95 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -7.89 Total: -2.05 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -1.32 Total: -14.68 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: -0.69 Total: -51.01 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: -1.92 Total: -31.86 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 34.79 SS G_CDS: -0.52 Total: 34.27 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -32.00 -11.95 -43.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.679 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds