Wall clock time and date at job start Tue Mar 31 2020 10:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86794 * 120.00229 * 2 1 4 4 H 1.48502 * 109.47063 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47210 * 300.00242 * 3 2 1 6 6 H 1.48501 * 109.47358 * 60.00454 * 3 2 1 7 7 C 1.37882 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99465 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00458 * 359.97438 * 7 2 1 10 10 N 1.46897 * 109.47506 * 180.02562 * 9 7 2 11 11 C 1.46892 * 111.00175 * 170.00259 * 10 9 7 12 12 C 1.53237 * 109.34150 * 187.25649 * 11 10 9 13 13 N 1.47075 * 108.52346 * 306.17086 * 12 11 10 14 14 S 1.65603 * 120.88526 * 231.18722 * 13 12 11 15 15 O 1.42102 * 104.27650 * 333.92690 * 14 13 12 16 16 O 1.42098 * 104.27898 * 206.06749 * 14 13 12 17 17 C 1.81408 * 104.44779 * 89.99456 * 14 13 12 18 18 C 1.53000 * 109.46799 * 180.02562 * 17 14 13 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 14 20 20 C 1.52999 * 109.47317 * 59.99960 * 19 18 17 21 21 C 1.53005 * 109.47159 * 300.00546 * 20 19 18 22 22 C 1.52997 * 109.47452 * 59.99536 * 21 20 19 23 23 C 1.47081 * 118.23929 * 51.45476 * 13 12 11 24 24 C 1.46894 * 111.00143 * 294.30759 * 10 9 7 25 25 H 0.97000 * 119.99236 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46701 * 60.00120 * 9 7 2 27 27 H 1.08997 * 109.47620 * 300.00734 * 9 7 2 28 28 H 1.09001 * 109.49611 * 67.29501 * 11 10 9 29 29 H 1.08998 * 109.49849 * 307.21452 * 11 10 9 30 30 H 1.09001 * 109.63032 * 186.45876 * 12 11 10 31 31 H 1.09001 * 109.62988 * 65.88128 * 12 11 10 32 32 H 1.08992 * 109.47429 * 300.00345 * 17 14 13 33 33 H 1.09002 * 109.47398 * 300.00340 * 18 17 14 34 34 H 1.09001 * 109.47194 * 60.00520 * 18 17 14 35 35 H 1.08996 * 109.47853 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.47153 * 300.00319 * 19 18 17 37 37 H 1.09000 * 109.47486 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.46716 * 60.00091 * 20 19 18 39 39 H 1.09002 * 109.46935 * 299.99411 * 21 20 19 40 40 H 1.09001 * 109.46812 * 179.97438 * 21 20 19 41 41 H 1.08993 * 109.47194 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.46695 * 59.99734 * 22 21 20 43 43 H 1.09002 * 109.62925 * 68.25029 * 23 13 12 44 44 H 1.08993 * 109.63236 * 188.83858 * 23 13 12 45 45 H 1.09002 * 109.49648 * 292.70076 * 24 10 9 46 46 H 1.09006 * 109.49688 * 52.78310 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2055 -3.6158 -0.0005 11 6 1.5210 -4.8935 0.2375 12 6 2.5635 -6.0033 0.4104 13 7 3.4614 -5.9864 -0.7543 14 16 3.7691 -7.3700 -1.6106 15 8 3.5624 -8.4165 -0.6717 16 8 5.0474 -7.1470 -2.1896 17 6 2.4865 -7.4032 -2.8931 18 6 2.6650 -8.6506 -3.7608 19 6 1.5837 -8.6783 -4.8428 20 6 1.7042 -7.4280 -5.7164 21 6 1.5258 -6.1805 -4.8487 22 6 2.6071 -6.1528 -3.7666 23 6 4.0837 -4.7092 -1.1348 24 6 2.9767 -3.6492 -1.2503 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5572 0.8896 28 1 0.8794 -5.1264 -0.6123 29 1 0.9158 -4.8192 1.1410 30 1 2.0629 -6.9695 0.4728 31 1 3.1391 -5.8266 1.3190 32 1 1.5033 -7.4255 -2.4233 33 1 3.6483 -8.6287 -4.2307 34 1 2.5795 -9.5414 -3.1384 35 1 1.7105 -9.5672 -5.4607 36 1 0.6003 -8.7000 -4.3732 37 1 0.9336 -7.4475 -6.4870 38 1 2.6876 -7.4063 -6.1859 39 1 0.5423 -6.2021 -4.3791 40 1 1.6121 -5.2897 -5.4710 41 1 2.4802 -5.2639 -3.1489 42 1 3.5905 -6.1312 -4.2363 43 1 4.8026 -4.4104 -0.3718 44 1 4.5885 -4.8193 -2.0945 45 1 2.3149 -3.8994 -2.0796 46 1 3.4272 -2.6723 -1.4260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601535945.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:36 Heat of formation + Delta-G solvation = -102.573072 kcal Electronic energy + Delta-G solvation = -26386.107104 eV Core-core repulsion = 22822.069000 eV Total energy + Delta-G solvation = -3564.038103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 316.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.86431 -39.29234 -38.28949 -37.10250 -36.00571 -34.26064 -32.22564 -32.06233 -31.68052 -29.62736 -26.77542 -24.67258 -24.14124 -23.79369 -23.49650 -21.49787 -20.83571 -19.76491 -18.71403 -18.46450 -17.90010 -17.11037 -16.69693 -16.27135 -15.92539 -15.66019 -15.50851 -15.34625 -15.23553 -15.06648 -14.95688 -14.33596 -14.10550 -13.71275 -13.62969 -13.52020 -13.29686 -13.20800 -13.16561 -12.87264 -12.73156 -12.63227 -12.58813 -12.29513 -12.25643 -12.20603 -12.16460 -11.97199 -11.59284 -11.46183 -11.26611 -11.17979 -10.91342 -10.59609 -9.99772 -8.93140 -8.18358 -6.27329 -0.81224 1.42460 1.44413 1.53834 1.56850 2.42268 2.77897 2.98788 3.14843 3.29009 3.36739 3.53344 3.64396 3.87283 4.08905 4.13744 4.17771 4.25696 4.30677 4.34243 4.38175 4.39964 4.45460 4.50021 4.58391 4.76739 4.81514 4.85853 4.90965 4.94516 5.06598 5.09505 5.11971 5.13552 5.18542 5.24922 5.26521 5.29261 5.35140 5.46676 5.55295 5.68461 6.08366 6.36464 6.66550 6.89656 7.42671 8.92639 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.003948 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.677169 B = 7091.032666 C = 7819.056444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.065 0.935 9 C 0.209 3.791 10 N -0.542 5.542 11 C 0.040 3.960 12 C 0.133 3.867 13 N -1.000 6.000 14 S 2.610 3.390 15 O -0.985 6.985 16 O -0.980 6.980 17 C -0.566 4.566 18 C -0.115 4.115 19 C -0.108 4.108 20 C -0.122 4.122 21 C -0.112 4.112 22 C -0.114 4.114 23 C 0.133 3.867 24 C 0.050 3.950 25 H 0.263 0.737 26 H -0.035 1.035 27 H 0.005 0.995 28 H 0.033 0.967 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.076 0.924 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.103 0.897 45 H 0.035 0.965 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.440 -17.136 -10.172 20.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.194 4.194 3 Si 0.790 3.210 4 H -0.187 1.187 5 H -0.206 1.206 6 H -0.208 1.208 7 C -0.558 4.558 8 H 0.083 0.917 9 C 0.083 3.917 10 N -0.267 5.267 11 C -0.090 4.090 12 C 0.008 3.992 13 N -0.837 5.837 14 S 2.709 3.291 15 O -0.976 6.976 16 O -0.971 6.971 17 C -0.679 4.679 18 C -0.154 4.154 19 C -0.146 4.146 20 C -0.160 4.160 21 C -0.151 4.151 22 C -0.153 4.153 23 C 0.008 3.992 24 C -0.079 4.079 25 H 0.072 0.928 26 H -0.017 1.017 27 H 0.023 0.977 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.124 0.876 31 H 0.095 0.905 32 H 0.167 0.833 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.121 0.879 45 H 0.053 0.947 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.377 -17.573 -9.548 20.473 hybrid contribution -1.160 1.379 -0.548 1.883 sum 3.217 -16.194 -10.095 19.352 Atomic orbital electron populations 1.70086 1.07659 1.27692 1.52064 1.25839 0.95634 1.02958 0.94965 0.85401 0.79123 0.78970 0.77521 1.18676 1.20582 1.20794 1.21509 0.93704 0.91018 1.49567 0.91726 1.19358 0.90007 0.88712 0.93605 1.61862 1.27092 1.02813 1.34935 1.22493 0.95543 0.89960 1.01000 1.21536 0.90803 0.98765 0.88089 1.57649 1.60298 1.24166 1.41589 1.05072 0.76294 0.72400 0.75338 1.93531 1.87475 1.55966 1.60579 1.93524 1.38673 1.84902 1.79997 1.30366 1.18701 1.04704 1.14131 1.21525 1.02091 0.93806 0.98014 1.21460 0.98075 0.98806 0.96296 1.21598 1.02688 0.93844 0.97857 1.21463 0.97976 0.99033 0.96617 1.21545 1.01873 0.94026 0.97823 1.21650 0.94431 0.81422 1.01732 1.22508 0.95624 0.99411 0.90363 0.92818 1.01716 0.97718 0.94912 0.90222 0.87574 0.90522 0.83327 0.90110 0.89668 0.89690 0.91239 0.90642 0.91417 0.91920 0.91118 0.90725 0.89929 0.90763 0.87852 0.94690 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 2 C 0.00 0.22 5.46 84.66 0.46 0.68 16 3 Si 0.96 43.16 29.54 68.60 2.03 45.18 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 7 C -0.52 -28.19 8.41 25.60 0.22 -27.98 16 8 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 9 C 0.21 10.57 4.72 85.56 0.40 10.97 16 10 N -0.54 -21.67 4.62 -898.91 -4.15 -25.82 16 11 C 0.04 1.28 5.62 86.38 0.49 1.76 16 12 C 0.13 3.59 6.46 86.35 0.56 4.15 16 13 N -1.00 -26.88 3.02 -511.33 -1.54 -28.42 16 14 S 2.61 65.80 4.85 -56.49 -0.27 65.53 16 15 O -0.98 -29.36 16.79 -127.65 -2.14 -31.50 16 16 O -0.98 -29.35 16.66 -127.65 -2.13 -31.48 16 17 C -0.57 -10.56 2.85 30.60 0.09 -10.47 16 18 C -0.12 -1.80 5.21 30.59 0.16 -1.64 16 19 C -0.11 -1.38 5.92 30.59 0.18 -1.19 16 20 C -0.12 -1.66 5.92 30.60 0.18 -1.48 16 21 C -0.11 -1.91 5.92 30.60 0.18 -1.72 16 22 C -0.11 -2.21 4.97 30.59 0.15 -2.05 16 23 C 0.13 3.80 5.63 86.51 0.49 4.29 16 24 C 0.05 1.75 5.33 86.54 0.46 2.21 16 25 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 26 H -0.03 -1.90 8.13 -2.39 -0.02 -1.92 16 27 H 0.00 0.26 7.97 -2.39 -0.02 0.24 16 28 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 2.54 7.99 -2.39 -0.02 2.53 16 30 H 0.11 2.38 7.19 -2.39 -0.02 2.36 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.15 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.62 4.60 -2.39 -0.01 1.61 16 42 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 43 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.10 2.56 7.18 -2.39 -0.02 2.54 16 45 H 0.04 1.16 5.93 -2.39 -0.01 1.15 16 46 H 0.08 2.95 6.67 -2.38 -0.02 2.94 16 Total: -1.00 -68.52 359.42 -2.97 -71.48 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 0.94 Total: 11.91 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.02 Total: -22.48 kcal Atomic # 7 Polarization: -103.24 SS G_CDS: -5.41 Total: -108.65 kcal Atomic # 8 Polarization: -58.71 SS G_CDS: -4.27 Total: -62.98 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 65.80 SS G_CDS: -0.27 Total: 65.53 kcal Total: -68.52 -2.97 -71.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535945.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.089 kcal (2) G-P(sol) polarization free energy of solvation -68.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds