Wall clock time and date at job start Tue Mar 31 2020 10:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48505 * 109.46941 * 270.00713 * 3 2 1 5 5 H 1.48500 * 109.46962 * 29.99981 * 3 2 1 6 6 H 1.48497 * 109.47146 * 150.00407 * 3 2 1 7 7 C 1.37876 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00099 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.52608 * 59.91837 * 9 7 2 11 11 C 1.53046 * 109.49623 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47169 * 179.97438 * 18 17 15 20 20 O 1.21215 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.47550 * 120.00062 * 180.02562 * 19 18 17 22 22 C 1.39553 * 119.74228 * 179.73022 * 21 19 18 23 23 C 1.38564 * 119.03930 * 179.79422 * 22 21 19 24 24 C 1.38634 * 118.50333 * 0.47104 * 23 22 21 25 25 C 1.38661 * 119.38425 * 359.75093 * 24 23 22 26 26 N 1.31436 * 120.93278 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 28 28 H 0.96996 * 119.99616 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 30 30 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 31 31 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 32 32 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 33 33 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 34 34 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 35 35 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 36 36 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 37 37 H 1.09000 * 109.47791 * 300.00853 * 18 17 15 38 38 H 1.08998 * 109.47237 * 60.00591 * 18 17 15 39 39 H 1.08003 * 120.47716 * 0.02562 * 22 21 19 40 40 H 1.07998 * 120.74686 * 180.21815 * 23 22 21 41 41 H 1.07998 * 120.30991 * 179.72677 * 24 23 22 42 42 H 1.08009 * 119.53069 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.58905 * 293.82203 * 27 14 13 44 44 H 1.09008 * 109.58585 * 173.39403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8762 -0.6794 0.8878 11 6 4.0223 -2.6368 -0.0010 12 6 5.5524 -2.6381 0.0315 13 6 6.0863 -1.9362 -1.2212 14 7 5.4856 -0.5980 -1.3058 15 6 6.2621 0.4968 -1.4280 16 8 5.7542 1.5959 -1.4964 17 6 7.7616 0.3550 -1.4796 18 6 8.4000 1.7383 -1.6202 19 6 9.8994 1.5967 -1.6712 20 8 10.4072 0.4982 -1.6024 21 6 10.7496 2.7953 -1.8049 22 6 12.1378 2.6584 -1.8459 23 6 12.9220 3.7933 -1.9761 24 6 12.2935 5.0268 -2.0508 25 6 10.9093 5.0893 -1.9990 26 7 10.1876 3.9972 -1.8797 27 6 4.0223 -0.4760 -1.2542 28 1 -0.4849 0.8400 0.0004 29 1 3.6400 -3.1573 0.8771 30 1 3.6778 -3.1441 -0.9022 31 1 5.8978 -2.1094 0.9199 32 1 5.9149 -3.6657 0.0551 33 1 5.8182 -2.5137 -2.1059 34 1 7.1708 -1.8466 -1.1582 35 1 8.1138 -0.1166 -0.5623 36 1 8.0389 -0.2613 -2.3348 37 1 8.0477 2.2096 -2.5377 38 1 8.1226 2.3551 -0.7654 39 1 12.5940 1.6816 -1.7809 40 1 13.9987 3.7190 -2.0143 41 1 12.8766 5.9306 -2.1482 42 1 10.4172 6.0490 -2.0566 43 1 3.5859 -0.9344 -2.1415 44 1 3.7449 0.5773 -1.2103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617294646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:29 Heat of formation + Delta-G solvation = -38.249974 kcal Electronic energy + Delta-G solvation = -25861.948396 eV Core-core repulsion = 22165.255600 eV Total energy + Delta-G solvation = -3696.692796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91603 -39.83211 -39.00508 -36.98525 -33.58196 -33.29765 -32.54805 -31.93495 -31.79281 -30.46272 -27.06973 -25.15585 -24.90891 -23.97487 -23.16642 -21.99130 -20.41051 -19.53761 -18.46649 -17.76286 -17.13926 -16.71261 -16.45175 -16.22380 -16.05380 -15.36179 -14.93670 -14.75185 -14.61014 -14.18438 -13.95967 -13.88531 -13.68296 -13.38682 -13.08299 -12.84530 -12.70141 -12.49796 -12.26773 -12.10701 -11.87351 -11.22541 -11.17400 -11.03223 -10.57090 -10.49911 -10.43460 -10.36214 -10.07150 -9.74590 -9.73857 -9.65595 -9.50856 -9.15197 -9.03914 -8.56911 -8.01877 -6.07858 -4.09345 0.07405 0.76686 1.93448 3.01799 3.25320 3.41004 3.41332 3.48569 3.60642 3.61063 4.02529 4.34735 4.45482 4.51421 4.55285 4.62344 4.80054 4.98016 5.08606 5.13605 5.21347 5.24367 5.25134 5.38330 5.52525 5.56102 5.59006 5.65595 5.83002 5.86813 5.98820 6.04923 6.11638 6.13343 6.22108 6.43390 6.56651 6.68019 6.78514 6.91705 7.00112 7.17779 7.46818 7.47621 7.74711 7.91710 8.48803 8.62094 8.95167 9.53946 11.04109 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.003006 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.745236 B = 9312.846315 C =10512.922974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.296 1.296 6 H -0.264 1.264 7 C -0.516 4.516 8 H 0.077 0.923 9 C 0.004 3.996 10 H 0.030 0.970 11 C -0.101 4.101 12 C -0.137 4.137 13 C 0.108 3.892 14 N -0.608 5.608 15 C 0.506 3.494 16 O -0.547 6.547 17 C -0.133 4.133 18 C -0.136 4.136 19 C 0.415 3.585 20 O -0.445 6.445 21 C 0.046 3.954 22 C -0.116 4.116 23 C -0.087 4.087 24 C -0.147 4.147 25 C 0.096 3.904 26 N -0.439 5.439 27 C 0.102 3.898 28 H 0.265 0.735 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.066 0.934 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.367 5.149 -4.689 28.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.130 4.130 3 Si 0.711 3.289 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.189 1.189 7 C -0.554 4.554 8 H 0.095 0.905 9 C -0.015 4.015 10 H 0.048 0.952 11 C -0.138 4.138 12 C -0.175 4.175 13 C -0.015 4.015 14 N -0.341 5.341 15 C 0.293 3.707 16 O -0.425 6.425 17 C -0.173 4.173 18 C -0.174 4.174 19 C 0.291 3.709 20 O -0.318 6.318 21 C -0.089 4.089 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.167 4.167 25 C -0.064 4.064 26 N -0.150 5.150 27 C -0.019 4.019 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.084 0.916 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 26.265 5.246 -4.656 27.186 hybrid contribution 1.339 1.025 -0.084 1.689 sum 27.605 6.271 -4.740 28.702 Atomic orbital electron populations 1.69897 1.06281 1.27123 1.50139 1.25051 0.94768 0.99147 0.94080 0.86959 0.79616 0.83335 0.78992 1.19905 1.22372 1.18854 1.20959 0.88244 0.94597 1.51600 0.90502 1.19489 0.96811 0.92242 0.92998 0.95202 1.21443 0.92058 0.98822 1.01509 1.21986 0.98546 0.99551 0.97420 1.21726 0.97446 0.83520 0.98854 1.48432 1.08353 1.05938 1.71335 1.20528 0.88982 0.84414 0.76745 1.90694 1.75595 1.25601 1.50614 1.21521 0.92570 0.98233 1.04928 1.21618 0.90556 0.98321 1.06905 1.22493 0.91678 0.86216 0.70523 1.90524 1.77469 1.27674 1.36089 1.21794 0.92342 0.93597 1.01209 1.22338 0.93890 1.00696 0.96731 1.21651 1.00955 0.92130 0.96552 1.22491 0.96485 0.98991 0.98693 1.22948 0.90994 0.97115 0.95344 1.67709 1.40777 0.98016 1.08526 1.22583 0.75851 1.02459 1.01002 0.92543 0.92247 0.92517 0.92021 0.91611 0.91515 0.90418 0.88553 0.88624 0.86986 0.86991 0.83602 0.84089 0.84116 0.81795 0.91608 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 3 Si 0.88 23.63 24.33 -169.99 -4.14 19.49 16 4 H -0.27 -7.38 6.92 56.52 0.39 -6.99 16 5 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 6 H -0.26 -7.08 6.53 56.52 0.37 -6.71 16 7 C -0.52 -14.48 9.14 -34.44 -0.31 -14.79 16 8 H 0.08 2.30 7.99 -52.48 -0.42 1.88 16 9 C 0.00 0.10 1.84 -91.65 -0.17 -0.07 16 10 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 11 C -0.10 -1.91 5.11 -26.68 -0.14 -2.05 16 12 C -0.14 -2.04 6.08 -26.61 -0.16 -2.20 16 13 C 0.11 1.54 6.34 -3.71 -0.02 1.52 16 14 N -0.61 -11.41 2.97 -172.77 -0.51 -11.92 16 15 C 0.51 9.36 7.70 -10.98 -0.08 9.27 16 16 O -0.55 -12.30 15.39 5.56 0.09 -12.22 16 17 C -0.13 -1.79 3.34 -27.88 -0.09 -1.88 16 18 C -0.14 -1.76 4.47 -27.88 -0.12 -1.88 16 19 C 0.41 4.92 7.13 -30.51 -0.22 4.70 16 20 O -0.45 -5.77 15.95 5.61 0.09 -5.68 16 21 C 0.05 0.50 6.73 -83.12 -0.56 -0.06 16 22 C -0.12 -0.98 9.64 -38.97 -0.38 -1.36 16 23 C -0.09 -0.53 10.17 -39.32 -0.40 -0.93 16 24 C -0.15 -0.83 10.12 -39.28 -0.40 -1.23 16 25 C 0.10 0.74 11.18 -17.56 -0.20 0.54 16 26 N -0.44 -4.75 9.79 -9.88 -0.10 -4.84 16 27 C 0.10 2.32 5.11 -3.71 -0.02 2.30 16 28 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 29 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 0.90 5.93 -51.93 -0.31 0.59 16 35 H 0.10 1.20 7.65 -51.93 -0.40 0.80 16 36 H 0.10 1.13 7.90 -51.93 -0.41 0.72 16 37 H 0.11 1.48 8.10 -51.93 -0.42 1.06 16 38 H 0.11 1.53 8.10 -51.93 -0.42 1.11 16 39 H 0.15 1.10 7.64 -52.48 -0.40 0.70 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 41 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 42 H 0.16 0.84 8.06 -52.48 -0.42 0.41 16 43 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 2.02 2.34 -51.92 -0.12 1.90 16 LS Contribution 356.66 15.07 5.37 5.37 Total: -1.00 -35.36 356.66 -8.05 -43.40 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -6.26 Total: -0.52 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -3.37 Total: -6.10 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 0.16 Total: -43.75 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: 0.18 Total: -17.90 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.14 Total: 19.49 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.36 -8.05 -43.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.155 kcal (2) G-P(sol) polarization free energy of solvation -35.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds