Wall clock time and date at job start Tue Mar 31 2020 10:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00313 * 2 1 4 4 H 1.48505 * 109.46941 * 270.00713 * 3 2 1 5 5 H 1.48500 * 109.46962 * 29.99981 * 3 2 1 6 6 H 1.48497 * 109.47146 * 150.00407 * 3 2 1 7 7 C 1.37876 * 119.99891 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99881 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00099 * 179.97438 * 7 2 1 10 10 H 1.08995 * 109.52608 * 59.91837 * 9 7 2 11 11 C 1.53046 * 109.49623 * 179.97438 * 9 7 2 12 12 C 1.53046 * 109.53579 * 181.31259 * 11 9 7 13 13 C 1.53187 * 109.31363 * 298.63645 * 12 11 9 14 14 N 1.46928 * 108.77625 * 54.63376 * 13 12 11 15 15 C 1.34780 * 120.63038 * 126.37031 * 14 13 12 16 16 O 1.21275 * 120.00065 * 180.02562 * 15 14 13 17 17 C 1.50704 * 119.99769 * 0.02562 * 15 14 13 18 18 C 1.52998 * 109.46827 * 179.97438 * 17 15 14 19 19 C 1.50700 * 109.47169 * 179.97438 * 18 17 15 20 20 O 1.21215 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.47550 * 120.00062 * 180.02562 * 19 18 17 22 22 C 1.39553 * 119.74228 * 179.73022 * 21 19 18 23 23 C 1.38564 * 119.03930 * 179.79422 * 22 21 19 24 24 C 1.38634 * 118.50333 * 0.47104 * 23 22 21 25 25 C 1.38661 * 119.38425 * 359.75093 * 24 23 22 26 26 N 1.31436 * 120.93278 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.73936 * 306.39044 * 14 13 12 28 28 H 0.96996 * 119.99616 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.45866 * 301.33434 * 11 9 7 30 30 H 1.09000 * 109.45949 * 61.29770 * 11 9 7 31 31 H 1.09001 * 109.49519 * 58.58791 * 12 11 9 32 32 H 1.08996 * 109.49601 * 178.68448 * 12 11 9 33 33 H 1.09000 * 109.59097 * 294.84726 * 13 12 11 34 34 H 1.09002 * 109.70548 * 174.49212 * 13 12 11 35 35 H 1.08994 * 109.47487 * 300.00418 * 17 15 14 36 36 H 1.09000 * 109.46482 * 60.00935 * 17 15 14 37 37 H 1.09000 * 109.47791 * 300.00853 * 18 17 15 38 38 H 1.08998 * 109.47237 * 60.00591 * 18 17 15 39 39 H 1.08003 * 120.47716 * 0.02562 * 22 21 19 40 40 H 1.07998 * 120.74686 * 180.21815 * 23 22 21 41 41 H 1.07998 * 120.30991 * 179.72677 * 24 23 22 42 42 H 1.08009 * 119.53069 * 179.97438 * 25 24 23 43 43 H 1.08996 * 109.58905 * 293.82203 * 27 14 13 44 44 H 1.09008 * 109.58585 * 173.39403 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8762 -0.6794 0.8878 11 6 4.0223 -2.6368 -0.0010 12 6 5.5524 -2.6381 0.0315 13 6 6.0863 -1.9362 -1.2212 14 7 5.4856 -0.5980 -1.3058 15 6 6.2621 0.4968 -1.4280 16 8 5.7542 1.5959 -1.4964 17 6 7.7616 0.3550 -1.4796 18 6 8.4000 1.7383 -1.6202 19 6 9.8994 1.5967 -1.6712 20 8 10.4072 0.4982 -1.6024 21 6 10.7496 2.7953 -1.8049 22 6 12.1378 2.6584 -1.8459 23 6 12.9220 3.7933 -1.9761 24 6 12.2935 5.0268 -2.0508 25 6 10.9093 5.0893 -1.9990 26 7 10.1876 3.9972 -1.8797 27 6 4.0223 -0.4760 -1.2542 28 1 -0.4849 0.8400 0.0004 29 1 3.6400 -3.1573 0.8771 30 1 3.6778 -3.1441 -0.9022 31 1 5.8978 -2.1094 0.9199 32 1 5.9149 -3.6657 0.0551 33 1 5.8182 -2.5137 -2.1059 34 1 7.1708 -1.8466 -1.1582 35 1 8.1138 -0.1166 -0.5623 36 1 8.0389 -0.2613 -2.3348 37 1 8.0477 2.2096 -2.5377 38 1 8.1226 2.3551 -0.7654 39 1 12.5940 1.6816 -1.7809 40 1 13.9987 3.7190 -2.0143 41 1 12.8766 5.9306 -2.1482 42 1 10.4172 6.0490 -2.0566 43 1 3.5859 -0.9344 -2.1415 44 1 3.7449 0.5773 -1.2103 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617294646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:28 Heat of formation + Delta-G solvation = -62.007903 kcal Electronic energy + Delta-G solvation = -25862.978617 eV Core-core repulsion = 22165.255600 eV Total energy + Delta-G solvation = -3697.723017 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.68244 -41.15227 -39.88465 -38.54052 -35.37390 -34.29521 -33.68731 -33.29968 -32.49586 -32.12910 -28.23921 -26.92969 -26.09143 -24.69202 -24.10687 -23.54803 -21.50735 -20.92831 -19.83290 -18.96074 -18.69740 -18.07135 -17.36788 -17.14236 -16.93924 -16.62887 -16.36065 -16.05211 -15.63292 -15.36575 -15.32338 -15.02979 -14.89231 -14.66979 -14.43045 -14.15763 -14.04763 -13.75054 -13.56113 -13.28715 -13.04232 -12.93998 -12.69277 -12.34466 -12.24899 -12.11148 -11.78716 -11.60188 -11.31212 -11.26630 -11.06084 -10.97477 -10.82319 -10.73106 -10.41505 -10.23455 -9.58010 -8.40409 -6.42054 -0.57487 0.24472 1.17519 1.22011 1.28476 1.40134 1.59398 1.99763 2.20243 2.68352 2.80654 2.96759 3.33625 3.56965 3.79566 3.94085 4.02019 4.03274 4.05517 4.08300 4.13560 4.15655 4.21545 4.44138 4.45793 4.52155 4.57604 4.66677 4.73225 4.74673 4.79147 4.89854 4.95248 4.98978 5.06716 5.13279 5.15795 5.22309 5.39780 5.52426 5.61807 5.62211 5.70007 6.15522 6.25228 6.49143 6.66785 6.85762 7.16129 7.23623 8.75686 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020215 B = 0.003006 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.745236 B = 9312.846315 C =10512.922974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.028 3.972 3 Si 0.939 3.061 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.511 4.511 8 H 0.051 0.949 9 C 0.004 3.996 10 H 0.013 0.987 11 C -0.099 4.099 12 C -0.128 4.128 13 C 0.101 3.899 14 N -0.611 5.611 15 C 0.499 3.501 16 O -0.595 6.595 17 C -0.118 4.118 18 C -0.133 4.133 19 C 0.424 3.576 20 O -0.460 6.460 21 C 0.015 3.985 22 C -0.120 4.120 23 C -0.085 4.085 24 C -0.130 4.130 25 C 0.081 3.919 26 N -0.474 5.474 27 C 0.107 3.893 28 H 0.267 0.733 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.152 0.848 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.063 0.937 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.755 4.977 -5.121 32.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.550 4.550 8 H 0.069 0.931 9 C -0.016 4.016 10 H 0.031 0.969 11 C -0.136 4.136 12 C -0.166 4.166 13 C -0.020 4.020 14 N -0.343 5.343 15 C 0.289 3.711 16 O -0.476 6.476 17 C -0.158 4.158 18 C -0.171 4.171 19 C 0.301 3.699 20 O -0.333 6.333 21 C -0.120 4.120 22 C -0.140 4.140 23 C -0.110 4.110 24 C -0.150 4.150 25 C -0.080 4.080 26 N -0.186 5.186 27 C -0.016 4.016 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.196 0.804 42 H 0.201 0.799 43 H 0.081 0.919 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 30.683 5.037 -5.082 31.506 hybrid contribution 0.014 1.099 0.036 1.100 sum 30.697 6.136 -5.046 31.709 Atomic orbital electron populations 1.69988 1.07480 1.27865 1.52432 1.25628 0.95210 1.01684 0.94545 0.86045 0.78185 0.80685 0.78220 1.20858 1.22031 1.19386 1.21326 0.90930 0.93198 1.49515 0.93108 1.19428 0.93858 0.95618 0.92706 0.96875 1.21387 0.95526 0.95170 1.01548 1.21949 0.94841 1.02196 0.97629 1.22116 0.99392 0.81111 0.99357 1.48490 1.06560 1.08136 1.71138 1.21417 0.90923 0.83459 0.75327 1.90669 1.76810 1.27539 1.52623 1.21501 0.88310 0.99116 1.06841 1.21524 0.91825 0.97800 1.05957 1.22336 0.91002 0.86712 0.69867 1.90503 1.77487 1.28143 1.37200 1.21627 0.93188 0.93157 1.04001 1.22508 0.93102 1.02018 0.96399 1.22094 1.02508 0.91327 0.95082 1.22911 0.95759 1.00369 0.95941 1.23435 0.92353 0.97008 0.95179 1.67632 1.42300 0.98839 1.09861 1.22085 0.79135 1.00176 1.00162 0.92352 0.92612 0.92217 0.92304 0.87421 0.89664 0.86602 0.86648 0.86130 0.87914 0.88378 0.83077 0.80679 0.80413 0.79949 0.91871 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.03 1.69 5.45 84.65 0.46 2.15 16 3 Si 0.94 51.14 24.33 68.60 1.67 52.81 16 4 H -0.28 -15.58 6.92 99.48 0.69 -14.90 16 5 H -0.29 -15.56 7.11 99.48 0.71 -14.85 16 6 H -0.27 -14.64 6.53 99.48 0.65 -13.99 16 7 C -0.51 -29.49 9.14 25.60 0.23 -29.26 16 8 H 0.05 3.14 7.99 -2.91 -0.02 3.11 16 9 C 0.00 0.17 1.84 -11.46 -0.02 0.15 16 10 H 0.01 0.67 7.20 -2.39 -0.02 0.65 16 11 C -0.10 -3.61 5.11 30.63 0.16 -3.45 16 12 C -0.13 -3.36 6.08 30.67 0.19 -3.18 16 13 C 0.10 2.52 6.34 86.36 0.55 3.07 16 14 N -0.61 -22.06 2.97 -818.91 -2.43 -24.49 16 15 C 0.50 18.05 7.70 87.66 0.67 18.73 16 16 O -0.59 -27.26 15.39 -3.01 -0.05 -27.31 16 17 C -0.12 -2.96 3.34 29.85 0.10 -2.86 16 18 C -0.13 -3.40 4.47 29.85 0.13 -3.27 16 19 C 0.42 9.70 7.13 28.14 0.20 9.90 16 20 O -0.46 -11.14 15.95 -2.83 -0.05 -11.19 16 21 C 0.01 0.31 6.73 41.76 0.28 0.59 16 22 C -0.12 -1.80 9.64 22.67 0.22 -1.58 16 23 C -0.08 -0.74 10.17 22.44 0.23 -0.51 16 24 C -0.13 -1.02 10.12 22.47 0.23 -0.80 16 25 C 0.08 1.10 11.18 84.85 0.95 2.05 16 26 N -0.47 -10.04 9.79 -185.16 -1.81 -11.85 16 27 C 0.11 4.90 5.11 86.36 0.44 5.34 16 28 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 29 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.12 2.07 5.93 -2.39 -0.01 2.05 16 35 H 0.12 2.50 7.65 -2.39 -0.02 2.48 16 36 H 0.12 2.46 7.90 -2.39 -0.02 2.44 16 37 H 0.10 2.79 8.10 -2.39 -0.02 2.77 16 38 H 0.10 2.76 8.10 -2.39 -0.02 2.74 16 39 H 0.15 2.00 7.64 -2.91 -0.02 1.97 16 40 H 0.18 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.18 0.05 8.06 -2.91 -0.02 0.02 16 42 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.06 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.05 2.52 2.34 -2.38 -0.01 2.51 16 Total: -1.00 -81.51 356.66 3.58 -77.94 By element: Atomic # 1 Polarization: 5.64 SS G_CDS: 0.93 Total: 6.57 kcal Atomic # 6 Polarization: -7.94 SS G_CDS: 5.02 Total: -2.93 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -3.95 Total: -95.89 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -0.09 Total: -38.49 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 1.67 Total: 52.81 kcal Total: -81.51 3.58 -77.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.928 kcal (2) G-P(sol) polarization free energy of solvation -81.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds