Wall clock time and date at job start Tue Mar 31 2020 10:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48504 * 109.47179 * 264.78931 * 3 2 1 5 5 H 1.48504 * 109.47032 * 24.78730 * 3 2 1 6 6 H 1.48501 * 109.47490 * 144.78876 * 3 2 1 7 7 C 1.37875 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00274 * 4.98975 * 7 2 1 9 9 C 1.50710 * 120.00082 * 184.98615 * 7 2 1 10 10 H 1.08998 * 109.49461 * 335.18995 * 9 7 2 11 11 C 1.53036 * 109.49741 * 215.12694 * 9 7 2 12 12 C 1.53039 * 109.53822 * 178.65236 * 11 9 7 13 13 C 1.53194 * 109.31352 * 61.35882 * 12 11 9 14 14 N 1.46929 * 108.77933 * 305.37066 * 13 12 11 15 15 C 1.34774 * 120.62797 * 233.61094 * 14 13 12 16 16 O 1.21284 * 119.99506 * 179.97438 * 15 14 13 17 17 C 1.50691 * 120.00378 * 359.97438 * 15 14 13 18 18 C 1.52999 * 109.47549 * 180.02562 * 17 15 14 19 19 C 1.50695 * 109.47644 * 180.02562 * 18 17 15 20 20 O 1.21214 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.47548 * 120.00374 * 179.97438 * 19 18 17 22 22 C 1.39544 * 119.74523 * 179.97438 * 21 19 18 23 23 C 1.38566 * 119.04246 * 179.97438 * 22 21 19 24 24 C 1.38633 * 118.49869 * 0.02562 * 23 22 21 25 25 C 1.38655 * 119.38953 * 359.97438 * 24 23 22 26 26 N 1.31447 * 120.92995 * 359.74383 * 25 24 23 27 27 C 1.46925 * 118.73892 * 53.60163 * 14 13 12 28 28 H 0.96999 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.45941 * 298.66470 * 11 9 7 30 30 H 1.08993 * 109.46320 * 58.62973 * 11 9 7 31 31 H 1.08999 * 109.50110 * 181.31324 * 12 11 9 32 32 H 1.08997 * 109.49506 * 301.41577 * 12 11 9 33 33 H 1.09009 * 109.58436 * 65.15633 * 13 12 11 34 34 H 1.08998 * 109.59044 * 185.58093 * 13 12 11 35 35 H 1.08996 * 109.47246 * 300.00434 * 17 15 14 36 36 H 1.09005 * 109.47313 * 60.00280 * 17 15 14 37 37 H 1.09009 * 109.47043 * 300.00264 * 18 17 15 38 38 H 1.08998 * 109.47302 * 59.99457 * 18 17 15 39 39 H 1.08001 * 120.48344 * 0.02562 * 22 21 19 40 40 H 1.07999 * 120.75420 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.30542 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.53599 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58707 * 186.60575 * 27 14 13 44 44 H 1.09006 * 109.58572 * 66.18245 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6068 1.9829 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4873 1.4745 0.8073 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0804 9 6 3.5074 -1.1964 0.1140 10 1 3.9010 -0.2467 -0.2481 11 6 4.0811 -2.3403 -0.7253 12 6 5.6089 -2.3231 -0.6376 13 6 6.0352 -2.5309 0.8190 14 7 5.3714 -1.5212 1.6548 15 6 6.0895 -0.7290 2.4752 16 8 5.5297 0.1010 3.1598 17 6 7.5879 -0.8744 2.5419 18 6 8.1544 0.1354 3.5420 19 6 9.6529 -0.0096 3.6083 20 8 10.2124 -0.8389 2.9238 21 6 10.4391 0.8578 4.5063 22 6 11.8264 0.7185 4.5638 23 6 12.5505 1.5411 5.4118 24 6 11.8642 2.4741 6.1737 25 6 10.4843 2.5578 6.0663 26 7 9.8211 1.7693 5.2500 27 6 3.9098 -1.3915 1.5791 28 1 -0.4850 0.8400 -0.0004 29 1 3.7065 -3.2916 -0.3470 30 1 3.7756 -2.2172 -1.7642 31 1 6.0178 -3.1236 -1.2542 32 1 5.9828 -1.3627 -0.9925 33 1 5.7408 -3.5279 1.1472 34 1 7.1164 -2.4209 0.9026 35 1 7.8410 -1.8847 2.8634 36 1 8.0152 -0.6891 1.5564 37 1 7.9014 1.1459 3.2209 38 1 7.7271 -0.0502 4.5274 39 1 12.3287 -0.0191 3.9555 40 1 13.6252 1.4574 5.4778 41 1 12.3995 3.1303 6.8440 42 1 9.9472 3.2835 6.6591 43 1 3.5887 -0.5298 2.1642 44 1 3.4421 -2.2955 1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617294647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:31 Heat of formation + Delta-G solvation = -46.050166 kcal Electronic energy + Delta-G solvation = -25695.335139 eV Core-core repulsion = 21998.304101 eV Total energy + Delta-G solvation = -3697.031038 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91045 -39.78175 -38.98484 -36.93056 -33.53725 -33.28216 -32.54456 -31.90624 -31.74468 -30.42719 -27.06244 -25.16789 -24.86914 -23.97135 -23.16689 -21.82203 -20.40713 -19.49884 -18.45533 -17.76382 -17.13275 -16.77582 -16.39223 -16.17676 -16.05023 -15.25928 -14.96415 -14.70915 -14.57137 -14.23840 -13.91816 -13.78137 -13.67411 -13.40408 -13.00108 -12.79612 -12.50968 -12.47644 -12.33106 -12.09895 -11.88857 -11.20732 -11.13348 -11.00453 -10.70103 -10.51724 -10.48573 -10.43080 -10.02163 -9.73660 -9.68561 -9.65309 -9.58231 -9.23923 -9.03462 -8.54931 -7.99481 -6.09136 -4.09855 0.07838 0.76940 1.94002 3.04953 3.27183 3.33970 3.41359 3.43149 3.51813 3.62758 4.03178 4.35008 4.45373 4.51758 4.55746 4.63707 4.80893 4.99751 5.09792 5.14377 5.23230 5.24377 5.25115 5.40833 5.53383 5.58966 5.60671 5.66549 5.84215 5.89476 5.99587 6.06011 6.12047 6.19325 6.32943 6.46876 6.65493 6.71552 6.83467 6.97603 7.00802 7.29869 7.39488 7.47959 7.75441 7.96238 8.49405 8.65003 8.96013 9.54481 11.03364 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.002857 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.876253 B = 9797.948907 C =10781.493958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.075 3.925 3 Si 0.872 3.128 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.514 4.514 8 H 0.075 0.925 9 C 0.005 3.995 10 H 0.034 0.966 11 C -0.105 4.105 12 C -0.138 4.138 13 C 0.108 3.892 14 N -0.609 5.609 15 C 0.506 3.494 16 O -0.547 6.547 17 C -0.134 4.134 18 C -0.136 4.136 19 C 0.415 3.585 20 O -0.445 6.445 21 C 0.046 3.954 22 C -0.117 4.117 23 C -0.087 4.087 24 C -0.147 4.147 25 C 0.096 3.904 26 N -0.439 5.439 27 C 0.114 3.886 28 H 0.265 0.735 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.146 0.854 40 H 0.141 0.859 41 H 0.141 0.859 42 H 0.165 0.835 43 H 0.082 0.918 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.536 1.000 9.725 28.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.183 1.183 7 C -0.552 4.552 8 H 0.093 0.907 9 C -0.015 4.015 10 H 0.052 0.948 11 C -0.143 4.143 12 C -0.176 4.176 13 C -0.015 4.015 14 N -0.342 5.342 15 C 0.294 3.706 16 O -0.425 6.425 17 C -0.174 4.174 18 C -0.173 4.173 19 C 0.291 3.709 20 O -0.318 6.318 21 C -0.089 4.089 22 C -0.137 4.137 23 C -0.113 4.113 24 C -0.167 4.167 25 C -0.064 4.064 26 N -0.150 5.150 27 C -0.007 4.007 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.159 0.841 42 H 0.182 0.818 43 H 0.100 0.900 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 25.430 1.137 9.621 27.212 hybrid contribution 1.329 0.942 0.101 1.633 sum 26.759 2.079 9.722 28.546 Atomic orbital electron populations 1.69902 1.06346 1.27155 1.49923 1.25076 0.94698 0.99063 0.93928 0.86915 0.80813 0.83644 0.78712 1.20322 1.21492 1.18291 1.20894 0.88691 0.94637 1.50954 0.90703 1.19473 0.96848 0.94750 0.90382 0.94798 1.21578 0.91753 1.00023 1.00918 1.22010 0.99001 1.01504 0.95104 1.21712 0.96783 0.91759 0.91283 1.48500 1.09291 1.35635 1.40739 1.20483 0.89132 0.81098 0.79913 1.90690 1.72645 1.35530 1.43634 1.21526 0.93129 1.01247 1.01453 1.21612 0.90906 1.02347 1.02470 1.22502 0.91671 0.79192 0.77575 1.90524 1.74348 1.30356 1.36544 1.21795 0.92088 0.96823 0.98230 1.22336 0.94292 0.99094 0.97947 1.21652 1.00984 0.94166 0.94490 1.22489 0.96116 0.98667 0.99399 1.22949 0.91668 0.96644 0.95146 1.67715 1.40594 1.02834 1.03864 1.22404 0.75395 1.01960 1.00976 0.92547 0.92753 0.92234 0.91729 0.92172 0.91607 0.90561 0.88697 0.88663 0.87015 0.87001 0.83612 0.84097 0.84123 0.81789 0.89979 0.92175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 22.39 26.99 -169.99 -4.59 17.80 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.26 -6.71 6.81 56.52 0.39 -6.32 16 7 C -0.51 -14.20 8.87 -34.44 -0.31 -14.51 16 8 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 9 C 0.01 0.12 1.92 -91.65 -0.18 -0.06 16 10 H 0.03 0.83 5.28 -51.93 -0.27 0.56 16 11 C -0.10 -2.00 5.15 -26.69 -0.14 -2.14 16 12 C -0.14 -2.08 6.08 -26.61 -0.16 -2.24 16 13 C 0.11 1.54 6.34 -3.71 -0.02 1.52 16 14 N -0.61 -11.14 2.97 -172.76 -0.51 -11.66 16 15 C 0.51 9.16 7.70 -10.99 -0.08 9.08 16 16 O -0.55 -11.99 15.39 5.55 0.09 -11.90 16 17 C -0.13 -1.79 3.34 -27.89 -0.09 -1.88 16 18 C -0.14 -1.73 4.47 -27.89 -0.12 -1.86 16 19 C 0.41 4.89 7.13 -30.52 -0.22 4.67 16 20 O -0.45 -5.77 15.95 5.61 0.09 -5.68 16 21 C 0.05 0.50 6.73 -83.13 -0.56 -0.06 16 22 C -0.12 -0.98 9.64 -38.97 -0.38 -1.36 16 23 C -0.09 -0.53 10.17 -39.31 -0.40 -0.92 16 24 C -0.15 -0.82 10.12 -39.28 -0.40 -1.22 16 25 C 0.10 0.73 11.18 -17.56 -0.20 0.53 16 26 N -0.44 -4.70 9.79 -9.88 -0.10 -4.80 16 27 C 0.11 2.50 5.70 -3.71 -0.02 2.48 16 28 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.05 1.01 8.14 -51.92 -0.42 0.59 16 30 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 34 H 0.08 0.89 5.93 -51.93 -0.31 0.58 16 35 H 0.09 1.12 7.90 -51.93 -0.41 0.71 16 36 H 0.10 1.19 7.65 -51.93 -0.40 0.79 16 37 H 0.11 1.52 8.10 -51.92 -0.42 1.09 16 38 H 0.11 1.45 8.10 -51.93 -0.42 1.03 16 39 H 0.15 1.10 7.64 -52.49 -0.40 0.70 16 40 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 41 H 0.14 0.36 8.06 -52.48 -0.42 -0.06 16 42 H 0.16 0.82 8.06 -52.48 -0.42 0.40 16 43 H 0.08 2.05 7.00 -51.93 -0.36 1.68 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 363.07 15.07 5.47 5.47 Total: -1.00 -34.56 363.07 -8.52 -43.09 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: -6.38 Total: 0.25 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.37 Total: -5.89 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.16 Total: -43.13 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: 0.18 Total: -17.59 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.59 Total: 17.80 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.56 -8.52 -43.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.963 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds