Wall clock time and date at job start Tue Mar 31 2020 10:59:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00013 * 2 1 4 4 H 1.48504 * 109.47179 * 264.78931 * 3 2 1 5 5 H 1.48504 * 109.47032 * 24.78730 * 3 2 1 6 6 H 1.48501 * 109.47490 * 144.78876 * 3 2 1 7 7 C 1.37875 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00274 * 4.98975 * 7 2 1 9 9 C 1.50710 * 120.00082 * 184.98615 * 7 2 1 10 10 H 1.08998 * 109.49461 * 335.18995 * 9 7 2 11 11 C 1.53036 * 109.49741 * 215.12694 * 9 7 2 12 12 C 1.53039 * 109.53822 * 178.65236 * 11 9 7 13 13 C 1.53194 * 109.31352 * 61.35882 * 12 11 9 14 14 N 1.46929 * 108.77933 * 305.37066 * 13 12 11 15 15 C 1.34774 * 120.62797 * 233.61094 * 14 13 12 16 16 O 1.21284 * 119.99506 * 179.97438 * 15 14 13 17 17 C 1.50691 * 120.00378 * 359.97438 * 15 14 13 18 18 C 1.52999 * 109.47549 * 180.02562 * 17 15 14 19 19 C 1.50695 * 109.47644 * 180.02562 * 18 17 15 20 20 O 1.21214 * 119.99889 * 359.97438 * 19 18 17 21 21 C 1.47548 * 120.00374 * 179.97438 * 19 18 17 22 22 C 1.39544 * 119.74523 * 179.97438 * 21 19 18 23 23 C 1.38566 * 119.04246 * 179.97438 * 22 21 19 24 24 C 1.38633 * 118.49869 * 0.02562 * 23 22 21 25 25 C 1.38655 * 119.38953 * 359.97438 * 24 23 22 26 26 N 1.31447 * 120.92995 * 359.74383 * 25 24 23 27 27 C 1.46925 * 118.73892 * 53.60163 * 14 13 12 28 28 H 0.96999 * 120.00142 * 0.02562 * 1 2 3 29 29 H 1.09009 * 109.45941 * 298.66470 * 11 9 7 30 30 H 1.08993 * 109.46320 * 58.62973 * 11 9 7 31 31 H 1.08999 * 109.50110 * 181.31324 * 12 11 9 32 32 H 1.08997 * 109.49506 * 301.41577 * 12 11 9 33 33 H 1.09009 * 109.58436 * 65.15633 * 13 12 11 34 34 H 1.08998 * 109.59044 * 185.58093 * 13 12 11 35 35 H 1.08996 * 109.47246 * 300.00434 * 17 15 14 36 36 H 1.09005 * 109.47313 * 60.00280 * 17 15 14 37 37 H 1.09009 * 109.47043 * 300.00264 * 18 17 15 38 38 H 1.08998 * 109.47302 * 59.99457 * 18 17 15 39 39 H 1.08001 * 120.48344 * 0.02562 * 22 21 19 40 40 H 1.07999 * 120.75420 * 180.02562 * 23 22 21 41 41 H 1.08003 * 120.30542 * 180.02562 * 24 23 22 42 42 H 1.08008 * 119.53599 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.58707 * 186.60575 * 27 14 13 44 44 H 1.09006 * 109.58572 * 66.18245 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6068 1.9829 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4873 1.4745 0.8073 7 6 2.0045 -1.1940 0.0005 8 1 1.4677 -2.1276 -0.0804 9 6 3.5074 -1.1964 0.1140 10 1 3.9010 -0.2467 -0.2481 11 6 4.0811 -2.3403 -0.7253 12 6 5.6089 -2.3231 -0.6376 13 6 6.0352 -2.5309 0.8190 14 7 5.3714 -1.5212 1.6548 15 6 6.0895 -0.7290 2.4752 16 8 5.5297 0.1010 3.1598 17 6 7.5879 -0.8744 2.5419 18 6 8.1544 0.1354 3.5420 19 6 9.6529 -0.0096 3.6083 20 8 10.2124 -0.8389 2.9238 21 6 10.4391 0.8578 4.5063 22 6 11.8264 0.7185 4.5638 23 6 12.5505 1.5411 5.4118 24 6 11.8642 2.4741 6.1737 25 6 10.4843 2.5578 6.0663 26 7 9.8211 1.7693 5.2500 27 6 3.9098 -1.3915 1.5791 28 1 -0.4850 0.8400 -0.0004 29 1 3.7065 -3.2916 -0.3470 30 1 3.7756 -2.2172 -1.7642 31 1 6.0178 -3.1236 -1.2542 32 1 5.9828 -1.3627 -0.9925 33 1 5.7408 -3.5279 1.1472 34 1 7.1164 -2.4209 0.9026 35 1 7.8410 -1.8847 2.8634 36 1 8.0152 -0.6891 1.5564 37 1 7.9014 1.1459 3.2209 38 1 7.7271 -0.0502 4.5274 39 1 12.3287 -0.0191 3.9555 40 1 13.6252 1.4574 5.4778 41 1 12.3995 3.1303 6.8440 42 1 9.9472 3.2835 6.6591 43 1 3.5887 -0.5298 2.1642 44 1 3.4421 -2.2955 1.9693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617294647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:30 Heat of formation + Delta-G solvation = -68.347969 kcal Electronic energy + Delta-G solvation = -25696.302044 eV Core-core repulsion = 21998.304101 eV Total energy + Delta-G solvation = -3697.997943 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.66134 -41.08926 -39.86870 -38.47185 -35.30164 -34.27725 -33.64928 -33.26440 -32.47876 -32.05612 -28.23796 -26.92932 -26.02542 -24.68232 -24.10144 -23.34508 -21.48029 -20.89442 -19.88500 -19.04876 -18.55604 -17.98323 -17.29100 -17.12768 -16.88518 -16.50728 -16.45769 -15.97092 -15.58662 -15.34317 -15.24460 -15.03524 -14.80398 -14.53766 -14.29944 -14.15274 -14.02130 -13.80605 -13.53098 -13.14699 -13.02846 -12.92065 -12.71069 -12.56937 -12.22676 -12.00482 -11.74497 -11.62732 -11.30617 -11.27285 -11.08232 -10.96762 -10.75110 -10.68633 -10.40670 -10.22778 -9.53916 -8.35931 -6.38032 -0.56704 0.25114 1.18400 1.24421 1.31362 1.41975 1.63925 2.04725 2.28209 2.69664 2.81393 3.02581 3.35353 3.59501 3.83497 3.94823 4.02787 4.04401 4.07329 4.09342 4.16486 4.17226 4.24955 4.47292 4.49712 4.56305 4.62982 4.73727 4.75171 4.78079 4.81509 4.95725 4.99294 5.01926 5.07438 5.13108 5.14015 5.25395 5.43275 5.58001 5.62604 5.64538 5.74338 6.16591 6.27767 6.54647 6.70564 6.86471 7.21365 7.28538 8.80467 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.019827 B = 0.002857 C = 0.002596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.876253 B = 9797.948907 C =10781.493958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.021 3.979 3 Si 0.933 3.067 4 H -0.261 1.261 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.510 4.510 8 H 0.043 0.957 9 C 0.004 3.996 10 H 0.022 0.978 11 C -0.103 4.103 12 C -0.130 4.130 13 C 0.102 3.898 14 N -0.612 5.612 15 C 0.500 3.500 16 O -0.594 6.594 17 C -0.120 4.120 18 C -0.132 4.132 19 C 0.423 3.577 20 O -0.460 6.460 21 C 0.015 3.985 22 C -0.120 4.120 23 C -0.085 4.085 24 C -0.131 4.131 25 C 0.081 3.919 26 N -0.473 5.473 27 C 0.124 3.876 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.151 0.849 40 H 0.175 0.825 41 H 0.178 0.822 42 H 0.184 0.816 43 H 0.044 0.956 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.031 0.912 10.011 32.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.177 4.177 3 Si 0.758 3.242 4 H -0.186 1.186 5 H -0.215 1.215 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.062 0.938 9 C -0.016 4.016 10 H 0.040 0.960 11 C -0.140 4.140 12 C -0.168 4.168 13 C -0.019 4.019 14 N -0.344 5.344 15 C 0.290 3.710 16 O -0.475 6.475 17 C -0.159 4.159 18 C -0.170 4.170 19 C 0.300 3.700 20 O -0.334 6.334 21 C -0.120 4.120 22 C -0.141 4.141 23 C -0.110 4.110 24 C -0.150 4.150 25 C -0.080 4.080 26 N -0.186 5.186 27 C 0.002 3.998 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.132 0.868 35 H 0.137 0.863 36 H 0.131 0.869 37 H 0.116 0.884 38 H 0.121 0.879 39 H 0.169 0.831 40 H 0.193 0.807 41 H 0.196 0.804 42 H 0.201 0.799 43 H 0.063 0.937 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 29.959 1.018 9.879 31.562 hybrid contribution -0.047 0.949 0.102 0.956 sum 29.911 1.967 9.981 31.594 Atomic orbital electron populations 1.70021 1.07815 1.27962 1.52336 1.25803 0.95327 1.02323 0.94280 0.85954 0.79010 0.80016 0.79180 1.18600 1.21477 1.19211 1.21215 0.91288 0.93165 1.49201 0.93841 1.19445 0.93979 0.96158 0.92029 0.95957 1.21481 0.95106 0.98004 0.99455 1.21970 0.95352 1.03049 0.96408 1.22080 0.98597 0.91320 0.89903 1.48528 1.07638 1.36680 1.41543 1.21334 0.90998 0.79913 0.78776 1.90669 1.73924 1.37476 1.45462 1.21500 0.88997 1.02739 1.02672 1.21515 0.92138 1.01488 1.01869 1.22355 0.90948 0.79128 0.77531 1.90502 1.74372 1.31139 1.37394 1.21625 0.93005 0.97867 0.99458 1.22504 0.93458 0.99647 0.98464 1.22092 1.02590 0.93114 0.93232 1.22911 0.95287 0.98128 0.98672 1.23441 0.93112 0.96559 0.94843 1.67639 1.42022 1.03835 1.05071 1.21836 0.78514 1.00264 0.99235 0.92466 0.92485 0.92827 0.87661 0.92423 0.89778 0.86821 0.86257 0.86863 0.88404 0.87862 0.83120 0.80710 0.80420 0.79908 0.93738 0.92286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.82 13.96 21.45 0.30 -59.52 16 2 C 0.02 1.25 5.47 84.65 0.46 1.71 16 3 Si 0.93 47.83 26.99 68.60 1.85 49.68 16 4 H -0.26 -12.59 7.11 99.48 0.71 -11.88 16 5 H -0.29 -14.66 7.11 99.48 0.71 -13.96 16 6 H -0.27 -13.97 6.81 99.48 0.68 -13.30 16 7 C -0.51 -29.21 8.87 25.60 0.23 -28.98 16 8 H 0.04 2.70 8.06 -2.91 -0.02 2.68 16 9 C 0.00 0.17 1.92 -11.46 -0.02 0.15 16 10 H 0.02 1.09 5.28 -2.39 -0.01 1.08 16 11 C -0.10 -3.78 5.15 30.62 0.16 -3.62 16 12 C -0.13 -3.45 6.08 30.67 0.19 -3.26 16 13 C 0.10 2.55 6.34 86.36 0.55 3.09 16 14 N -0.61 -21.67 2.97 -818.89 -2.43 -24.11 16 15 C 0.50 17.81 7.70 87.65 0.67 18.48 16 16 O -0.59 -26.78 15.39 -3.04 -0.05 -26.82 16 17 C -0.12 -2.98 3.34 29.84 0.10 -2.88 16 18 C -0.13 -3.35 4.47 29.85 0.13 -3.21 16 19 C 0.42 9.66 7.13 28.14 0.20 9.86 16 20 O -0.46 -11.19 15.95 -2.82 -0.05 -11.23 16 21 C 0.01 0.31 6.73 41.76 0.28 0.59 16 22 C -0.12 -1.80 9.64 22.66 0.22 -1.58 16 23 C -0.08 -0.74 10.17 22.44 0.23 -0.51 16 24 C -0.13 -1.01 10.12 22.46 0.23 -0.78 16 25 C 0.08 1.08 11.18 84.85 0.95 2.03 16 26 N -0.47 -9.93 9.79 -185.17 -1.81 -11.74 16 27 C 0.12 5.57 5.70 86.36 0.49 6.06 16 28 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 29 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 30 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.03 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.11 2.06 5.93 -2.39 -0.01 2.04 16 35 H 0.12 2.43 7.90 -2.39 -0.02 2.41 16 36 H 0.11 2.47 7.65 -2.38 -0.02 2.45 16 37 H 0.10 2.74 8.10 -2.38 -0.02 2.72 16 38 H 0.10 2.76 8.10 -2.39 -0.02 2.74 16 39 H 0.15 2.00 7.64 -2.91 -0.02 1.97 16 40 H 0.18 0.29 8.06 -2.91 -0.02 0.26 16 41 H 0.18 0.03 8.06 -2.91 -0.02 0.00 16 42 H 0.18 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.04 2.31 7.00 -2.39 -0.02 2.29 16 44 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 Total: -1.00 -80.24 363.07 3.85 -76.39 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.97 Total: 10.19 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 5.06 Total: -2.85 kcal Atomic # 7 Polarization: -91.43 SS G_CDS: -3.95 Total: -95.37 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -0.09 Total: -38.05 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 1.85 Total: 49.68 kcal Total: -80.24 3.85 -76.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617294647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.047 kcal (2) G-P(sol) polarization free energy of solvation -80.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds