Wall clock time and date at job start Tue Mar 31 2020 10:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 120.00475 * 2 1 4 4 H 1.48503 * 109.47348 * 240.00387 * 3 2 1 5 5 H 1.48508 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47253 * 120.00047 * 3 2 1 7 7 C 1.38654 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99890 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00378 * 185.43883 * 9 7 2 11 11 C 1.38952 * 120.03830 * 185.81919 * 10 9 7 12 12 C 1.38121 * 120.07380 * 179.97438 * 11 10 9 13 13 C 1.38199 * 120.13847 * 0.02562 * 12 11 10 14 14 C 1.38922 * 120.06495 * 0.02562 * 13 12 11 15 15 N 1.39941 * 120.03525 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00194 * 33.41573 * 15 14 13 17 17 O 1.21586 * 119.99470 * 5.17198 * 16 15 14 18 18 N 1.34777 * 120.00063 * 185.17283 * 16 15 14 19 19 C 1.47416 * 125.64937 * 5.10550 * 18 16 15 20 20 C 1.54911 * 104.92867 * 155.89099 * 19 18 16 21 21 C 1.55156 * 101.58003 * 36.95417 * 20 19 18 22 22 C 1.47184 * 125.73220 * 184.96681 * 18 16 15 23 23 H 1.09000 * 109.94812 * 300.49598 * 22 18 16 24 24 C 1.53000 * 109.92426 * 61.57637 * 22 18 16 25 25 C 1.53005 * 117.49975 * 242.32824 * 24 22 18 26 26 C 1.52998 * 117.50123 * 173.66788 * 24 22 18 27 27 C 1.38735 * 120.03490 * 6.11281 * 10 9 7 28 28 H 0.97006 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.96352 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.93223 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96828 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99967 * 213.42014 * 15 14 13 33 33 H 1.08996 * 110.37091 * 36.99885 * 19 18 16 34 34 H 1.09005 * 110.36948 * 274.78236 * 19 18 16 35 35 H 1.09005 * 111.00520 * 155.02500 * 20 19 18 36 36 H 1.08997 * 111.00280 * 278.84060 * 20 19 18 37 37 H 1.08998 * 110.72148 * 82.86570 * 21 20 19 38 38 H 1.09009 * 110.71837 * 206.13483 * 21 20 19 39 39 H 1.08999 * 115.55066 * 27.99103 * 24 22 18 40 40 H 1.09003 * 117.49573 * 359.97438 * 25 24 22 41 41 H 1.08998 * 117.50116 * 145.01626 * 25 24 22 42 42 H 1.09001 * 117.50477 * 214.97887 * 26 24 22 43 43 H 1.09003 * 117.49739 * 359.97438 * 26 24 22 44 44 H 1.08009 * 120.06441 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0691 -3.5043 0.1136 11 6 1.4539 -4.7449 -0.0007 12 6 2.2006 -5.9011 0.1148 13 6 3.5614 -5.8282 0.3447 14 6 4.1823 -4.5909 0.4609 15 7 5.5602 -4.5177 0.6942 16 6 6.3824 -5.4496 0.1726 17 8 5.9407 -6.2988 -0.5771 18 7 7.6942 -5.4400 0.4819 19 6 8.3412 -4.5400 1.4538 20 6 9.6207 -5.2897 1.9015 21 6 10.0624 -5.9694 0.5785 22 6 8.7190 -6.3273 -0.0914 23 1 8.4675 -7.3677 0.1145 24 6 8.8155 -6.1047 -1.6021 25 6 8.4790 -7.2869 -2.5133 26 6 9.9319 -6.8324 -2.3536 27 6 3.4340 -3.4278 0.3504 28 1 -0.4850 0.8401 0.0004 29 1 0.3906 -4.8052 -0.1807 30 1 1.7201 -6.8642 0.0252 31 1 4.1426 -6.7340 0.4349 32 1 5.9235 -3.7964 1.2315 33 1 7.6846 -4.3676 2.3066 34 1 8.6022 -3.5939 0.9795 35 1 10.3797 -4.5911 2.2541 36 1 9.3913 -6.0324 2.6655 37 1 10.6296 -5.2750 -0.0412 38 1 10.6434 -6.8690 0.7824 39 1 8.5418 -5.1082 -1.9489 40 1 8.1893 -8.2233 -2.0364 41 1 7.9844 -7.0681 -3.4596 42 1 10.3927 -6.3149 -3.1950 43 1 10.5981 -7.4695 -1.7716 44 1 3.9138 -2.4646 0.4439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728688174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:06 Heat of formation + Delta-G solvation = 7.329606 kcal Electronic energy + Delta-G solvation = -26083.400620 eV Core-core repulsion = 22388.684303 eV Total energy + Delta-G solvation = -3694.716317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.68865 -39.17546 -38.15403 -36.47533 -36.14993 -34.12166 -32.24312 -31.70697 -29.42278 -28.96625 -28.25778 -25.29733 -24.30862 -22.68018 -22.15522 -21.76977 -21.66065 -20.46073 -19.46557 -18.45479 -17.83493 -17.14626 -16.61504 -15.84604 -15.34572 -15.09546 -14.76869 -14.73267 -14.28152 -14.16728 -13.92343 -13.57296 -13.52202 -13.21647 -12.92735 -12.86295 -12.52878 -12.23372 -11.80916 -11.70158 -11.60206 -11.51799 -11.48606 -11.07678 -11.05027 -10.97657 -10.71787 -10.51156 -10.43659 -10.07710 -9.93484 -9.55564 -9.45132 -8.78415 -8.73814 -7.65051 -7.08856 -6.42520 -4.02114 2.11041 2.43736 2.55985 3.12485 3.13674 3.16746 3.35492 3.62603 3.97070 3.99983 4.22923 4.38598 4.47179 4.65323 4.70592 4.86502 4.89174 5.02502 5.13288 5.14909 5.21991 5.31923 5.36558 5.43711 5.48486 5.54017 5.65893 5.73063 5.84484 5.85623 6.02023 6.04806 6.07356 6.12577 6.15513 6.31210 6.37582 6.64866 6.91114 7.05488 7.15455 7.30796 7.39140 7.47015 7.87493 8.01793 8.04158 8.70322 9.02913 9.74313 10.75657 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003217 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.066758 B = 8702.353298 C = 9547.136438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.391 4.391 8 H 0.089 0.911 9 O -0.177 6.177 10 C 0.170 3.830 11 C -0.203 4.203 12 C -0.062 4.062 13 C -0.205 4.205 14 C 0.200 3.800 15 N -0.681 5.681 16 C 0.721 3.279 17 O -0.559 6.559 18 N -0.633 5.633 19 C 0.094 3.906 20 C -0.131 4.131 21 C -0.125 4.125 22 C 0.189 3.811 23 H 0.075 0.925 24 C -0.157 4.157 25 C -0.161 4.161 26 C -0.180 4.180 27 C -0.259 4.259 28 H 0.270 0.730 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.401 0.599 33 H 0.074 0.926 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.461 -10.044 2.826 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.106 0.894 9 O -0.080 6.080 10 C 0.116 3.884 11 C -0.223 4.223 12 C -0.081 4.081 13 C -0.226 4.226 14 C 0.107 3.893 15 N -0.328 5.328 16 C 0.424 3.576 17 O -0.434 6.434 18 N -0.372 5.372 19 C -0.029 4.029 20 C -0.169 4.169 21 C -0.163 4.163 22 C 0.085 3.915 23 H 0.093 0.907 24 C -0.176 4.176 25 C -0.198 4.198 26 C -0.218 4.218 27 C -0.281 4.281 28 H 0.080 0.920 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.138 0.862 32 H 0.235 0.765 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 20.638 -10.467 2.238 23.249 hybrid contribution 0.712 1.391 0.252 1.583 sum 21.350 -9.077 2.490 23.333 Atomic orbital electron populations 1.70031 1.05908 1.27685 1.46221 1.25260 0.95819 0.98729 0.96655 0.85813 0.78724 0.79987 0.79066 1.19577 1.20268 1.19600 1.21213 0.91612 0.80947 1.53017 0.89383 1.84015 1.33863 1.11342 1.78822 1.19055 0.89442 0.88085 0.91855 1.20232 1.00057 0.90003 1.11973 1.20519 0.93098 0.96886 0.97628 1.20564 0.94506 0.95944 1.11569 1.17187 0.80084 0.93915 0.98149 1.42636 1.05757 1.29343 1.55070 1.15376 0.79334 0.82317 0.80607 1.90952 1.74109 1.39118 1.39236 1.47675 1.05475 1.39276 1.44803 1.22322 0.94722 0.93681 0.92191 1.22750 0.96665 0.99988 0.97490 1.22689 0.95780 1.01608 0.96191 1.20946 0.86328 0.93878 0.90345 0.90699 1.22560 1.03922 0.97989 0.93136 1.22907 0.96920 0.98589 1.01374 1.22973 0.91928 1.04071 1.02783 1.20759 0.94813 0.97097 1.15423 0.92009 0.86442 0.86687 0.86244 0.76455 0.90713 0.91380 0.89697 0.90472 0.90051 0.89983 0.87989 0.88747 0.88994 0.88961 0.88859 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.42 13.67 55.48 0.76 -24.66 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.39 -10.98 9.44 30.89 0.29 -10.69 16 8 H 0.09 2.28 5.30 -52.49 -0.28 2.00 16 9 O -0.18 -5.10 9.76 0.06 0.00 -5.10 16 10 C 0.17 4.20 6.64 -39.13 -0.26 3.94 16 11 C -0.20 -4.46 9.99 -39.36 -0.39 -4.86 16 12 C -0.06 -1.22 10.03 -39.64 -0.40 -1.62 16 13 C -0.20 -4.10 8.65 -39.34 -0.34 -4.44 16 14 C 0.20 4.00 6.27 -83.72 -0.53 3.48 16 15 N -0.68 -11.10 5.28 -14.24 -0.08 -11.17 16 16 C 0.72 11.73 7.98 -86.91 -0.69 11.03 16 17 O -0.56 -10.98 14.01 5.29 0.07 -10.91 16 18 N -0.63 -7.62 3.07 -168.58 -0.52 -8.13 16 19 C 0.09 0.79 6.43 -2.53 -0.02 0.77 16 20 C -0.13 -0.80 7.09 -24.58 -0.17 -0.97 16 21 C -0.12 -0.83 5.99 -24.90 -0.15 -0.98 16 22 C 0.19 1.94 3.08 -66.87 -0.21 1.73 16 23 H 0.08 0.84 7.90 -51.93 -0.41 0.43 16 24 C -0.16 -1.71 4.74 -90.62 -0.43 -2.14 16 25 C -0.16 -1.78 10.19 -26.69 -0.27 -2.05 16 26 C -0.18 -1.52 9.81 -26.69 -0.26 -1.78 16 27 C -0.26 -5.76 9.04 -39.21 -0.35 -6.11 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.12 2.46 8.06 -52.48 -0.42 2.04 16 30 H 0.12 1.88 8.06 -52.48 -0.42 1.45 16 31 H 0.12 2.37 6.41 -52.49 -0.34 2.03 16 32 H 0.40 5.35 7.50 -40.82 -0.31 5.05 16 33 H 0.07 0.59 7.59 -51.93 -0.39 0.19 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.51 7.85 -51.93 -0.41 0.10 16 38 H 0.08 0.43 8.14 -51.92 -0.42 0.01 16 39 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.09 1.06 8.04 -51.93 -0.42 0.64 16 41 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.09 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.13 2.79 5.72 -52.48 -0.30 2.49 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -33.52 363.33 -9.79 -43.32 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.21 Total: 9.42 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: -4.28 Total: -13.69 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.17 Total: -43.97 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.07 Total: -16.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.52 -9.79 -43.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728688174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.649 kcal (2) G-P(sol) polarization free energy of solvation -33.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds