Wall clock time and date at job start Tue Mar 31 2020 10:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86796 * 120.00475 * 2 1 4 4 H 1.48503 * 109.47348 * 240.00387 * 3 2 1 5 5 H 1.48508 * 109.47044 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47253 * 120.00047 * 3 2 1 7 7 C 1.38654 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99890 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00170 * 359.97438 * 7 2 1 10 10 C 1.35746 * 117.00378 * 185.43883 * 9 7 2 11 11 C 1.38952 * 120.03830 * 185.81919 * 10 9 7 12 12 C 1.38121 * 120.07380 * 179.97438 * 11 10 9 13 13 C 1.38199 * 120.13847 * 0.02562 * 12 11 10 14 14 C 1.38922 * 120.06495 * 0.02562 * 13 12 11 15 15 N 1.39941 * 120.03525 * 179.97438 * 14 13 12 16 16 C 1.34780 * 120.00194 * 33.41573 * 15 14 13 17 17 O 1.21586 * 119.99470 * 5.17198 * 16 15 14 18 18 N 1.34777 * 120.00063 * 185.17283 * 16 15 14 19 19 C 1.47416 * 125.64937 * 5.10550 * 18 16 15 20 20 C 1.54911 * 104.92867 * 155.89099 * 19 18 16 21 21 C 1.55156 * 101.58003 * 36.95417 * 20 19 18 22 22 C 1.47184 * 125.73220 * 184.96681 * 18 16 15 23 23 H 1.09000 * 109.94812 * 300.49598 * 22 18 16 24 24 C 1.53000 * 109.92426 * 61.57637 * 22 18 16 25 25 C 1.53005 * 117.49975 * 242.32824 * 24 22 18 26 26 C 1.52998 * 117.50123 * 173.66788 * 24 22 18 27 27 C 1.38735 * 120.03490 * 6.11281 * 10 9 7 28 28 H 0.97006 * 119.99637 * 359.97438 * 1 2 3 29 29 H 1.08008 * 119.96352 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.93223 * 180.02562 * 12 11 10 31 31 H 1.08002 * 119.96828 * 179.97438 * 13 12 11 32 32 H 0.97003 * 119.99967 * 213.42014 * 15 14 13 33 33 H 1.08996 * 110.37091 * 36.99885 * 19 18 16 34 34 H 1.09005 * 110.36948 * 274.78236 * 19 18 16 35 35 H 1.09005 * 111.00520 * 155.02500 * 20 19 18 36 36 H 1.08997 * 111.00280 * 278.84060 * 20 19 18 37 37 H 1.08998 * 110.72148 * 82.86570 * 21 20 19 38 38 H 1.09009 * 110.71837 * 206.13483 * 21 20 19 39 39 H 1.08999 * 115.55066 * 27.99103 * 24 22 18 40 40 H 1.09003 * 117.49573 * 359.97438 * 25 24 22 41 41 H 1.08998 * 117.50116 * 145.01626 * 25 24 22 42 42 H 1.09001 * 117.50477 * 214.97887 * 26 24 22 43 43 H 1.09003 * 117.49739 * 359.97438 * 26 24 22 44 44 H 1.08009 * 120.06441 * 359.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1034 1.6963 -1.2126 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6962 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0691 -3.5043 0.1136 11 6 1.4539 -4.7449 -0.0007 12 6 2.2006 -5.9011 0.1148 13 6 3.5614 -5.8282 0.3447 14 6 4.1823 -4.5909 0.4609 15 7 5.5602 -4.5177 0.6942 16 6 6.3824 -5.4496 0.1726 17 8 5.9407 -6.2988 -0.5771 18 7 7.6942 -5.4400 0.4819 19 6 8.3412 -4.5400 1.4538 20 6 9.6207 -5.2897 1.9015 21 6 10.0624 -5.9694 0.5785 22 6 8.7190 -6.3273 -0.0914 23 1 8.4675 -7.3677 0.1145 24 6 8.8155 -6.1047 -1.6021 25 6 8.4790 -7.2869 -2.5133 26 6 9.9319 -6.8324 -2.3536 27 6 3.4340 -3.4278 0.3504 28 1 -0.4850 0.8401 0.0004 29 1 0.3906 -4.8052 -0.1807 30 1 1.7201 -6.8642 0.0252 31 1 4.1426 -6.7340 0.4349 32 1 5.9235 -3.7964 1.2315 33 1 7.6846 -4.3676 2.3066 34 1 8.6022 -3.5939 0.9795 35 1 10.3797 -4.5911 2.2541 36 1 9.3913 -6.0324 2.6655 37 1 10.6296 -5.2750 -0.0412 38 1 10.6434 -6.8690 0.7824 39 1 8.5418 -5.1082 -1.9489 40 1 8.1893 -8.2233 -2.0364 41 1 7.9844 -7.0681 -3.4596 42 1 10.3927 -6.3149 -3.1950 43 1 10.5981 -7.4695 -1.7716 44 1 3.9138 -2.4646 0.4439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728688174.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:06 Heat of formation + Delta-G solvation = -12.805337 kcal Electronic energy + Delta-G solvation = -26084.273737 eV Core-core repulsion = 22388.684303 eV Total energy + Delta-G solvation = -3695.589434 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88151 -40.70173 -39.47460 -37.98444 -37.13856 -35.60816 -34.24074 -32.66690 -30.91843 -30.15842 -29.60993 -27.30660 -25.28756 -23.50526 -23.45754 -23.36778 -22.53013 -21.50966 -20.72164 -19.77080 -19.49580 -18.79382 -17.57686 -17.07837 -16.80062 -16.66819 -16.23255 -15.92431 -15.72555 -15.45655 -15.43731 -15.04535 -14.60326 -14.39254 -14.11180 -14.02532 -13.59186 -13.56098 -13.28928 -13.15003 -12.74716 -12.69184 -12.45793 -12.40824 -12.26957 -12.14297 -12.11552 -11.60561 -11.51199 -11.34956 -11.27199 -11.10340 -10.80608 -10.71165 -9.76829 -9.31728 -8.83477 -8.46452 -6.15421 0.44549 0.70371 1.35129 1.41342 1.46343 1.51752 2.03737 2.18054 2.75463 2.84467 2.97125 3.17598 3.48975 3.61831 3.69633 3.73375 4.07639 4.10698 4.11666 4.17286 4.27602 4.32795 4.44479 4.46495 4.56690 4.62333 4.72096 4.73882 4.78840 4.94554 5.00071 5.00717 5.03837 5.10189 5.10945 5.17803 5.24931 5.25461 5.39353 5.45860 5.52112 5.67147 5.67696 5.98757 6.01722 6.19631 6.82290 6.97636 7.42938 7.77245 8.76412 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.003217 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.066758 B = 8702.353298 C = 9547.136438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.260 1.260 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.415 4.415 8 H 0.100 0.900 9 O -0.225 6.225 10 C 0.137 3.863 11 C -0.215 4.215 12 C -0.050 4.050 13 C -0.200 4.200 14 C 0.207 3.793 15 N -0.675 5.675 16 C 0.715 3.285 17 O -0.599 6.599 18 N -0.628 5.628 19 C 0.082 3.918 20 C -0.121 4.121 21 C -0.114 4.114 22 C 0.182 3.818 23 H 0.063 0.937 24 C -0.169 4.169 25 C -0.186 4.186 26 C -0.144 4.144 27 C -0.262 4.262 28 H 0.273 0.727 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.127 0.873 32 H 0.415 0.585 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.088 0.912 41 H 0.077 0.923 42 H 0.103 0.897 43 H 0.117 0.883 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.415 -10.437 3.800 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.117 0.883 9 O -0.131 6.131 10 C 0.086 3.914 11 C -0.235 4.235 12 C -0.068 4.068 13 C -0.221 4.221 14 C 0.112 3.888 15 N -0.323 5.323 16 C 0.418 3.582 17 O -0.477 6.477 18 N -0.365 5.365 19 C -0.040 4.040 20 C -0.159 4.159 21 C -0.152 4.152 22 C 0.079 3.921 23 H 0.081 0.919 24 C -0.188 4.188 25 C -0.223 4.223 26 C -0.182 4.182 27 C -0.284 4.284 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.171 0.829 31 H 0.145 0.855 32 H 0.252 0.748 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.098 0.902 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.095 0.905 42 H 0.121 0.879 43 H 0.135 0.865 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 24.686 -10.890 3.245 27.176 hybrid contribution -0.395 1.235 -0.059 1.298 sum 24.291 -9.656 3.186 26.333 Atomic orbital electron populations 1.70183 1.08034 1.28912 1.48587 1.26584 0.96834 1.02693 0.95750 0.84667 0.77443 0.74280 0.79942 1.18473 1.19645 1.17726 1.21741 0.92422 0.81428 1.53484 0.88250 1.83981 1.35460 1.12455 1.81231 1.19560 0.90649 0.88011 0.93182 1.20463 1.00635 0.89988 1.12437 1.20900 0.92851 0.97611 0.95472 1.20835 0.94821 0.96193 1.10216 1.17202 0.81740 0.93153 0.96712 1.42506 1.04412 1.30114 1.55233 1.15546 0.80631 0.81753 0.80281 1.90916 1.75341 1.40515 1.40974 1.47757 1.04236 1.39714 1.44806 1.22668 0.95861 0.93815 0.91612 1.22765 0.95747 1.00201 0.97149 1.22706 0.93586 1.02877 0.96054 1.21196 0.87676 0.93030 0.90225 0.91891 1.22522 1.05932 0.96676 0.93715 1.22901 0.99742 0.98630 1.01007 1.23054 0.90531 1.02369 1.02210 1.20763 0.94170 0.97915 1.15591 0.91784 0.86151 0.82870 0.85503 0.74770 0.90150 0.90370 0.87063 0.90195 0.89112 0.87816 0.90181 0.89350 0.90475 0.87897 0.86471 0.85483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.39 13.67 21.61 0.30 -56.09 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.71 16 3 Si 1.02 42.37 29.55 68.60 2.03 44.39 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 6 H -0.25 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.41 -24.14 9.44 67.92 0.64 -23.50 16 8 H 0.10 5.29 5.30 -2.91 -0.02 5.28 16 9 O -0.23 -13.65 9.76 -22.68 -0.22 -13.87 16 10 C 0.14 7.04 6.64 22.56 0.15 7.19 16 11 C -0.22 -9.65 9.99 22.41 0.22 -9.43 16 12 C -0.05 -1.89 10.03 22.23 0.22 -1.67 16 13 C -0.20 -7.81 8.65 22.42 0.19 -7.61 16 14 C 0.21 8.21 6.27 38.13 0.24 8.45 16 15 N -0.67 -21.42 5.28 -317.23 -1.68 -23.09 16 16 C 0.72 22.75 7.98 179.05 1.43 24.18 16 17 O -0.60 -23.50 14.01 -3.99 -0.06 -23.55 16 18 N -0.63 -14.12 3.07 -805.51 -2.47 -16.59 16 19 C 0.08 1.15 6.43 86.86 0.56 1.71 16 20 C -0.12 -0.99 7.09 31.99 0.23 -0.76 16 21 C -0.11 -1.07 5.99 31.78 0.19 -0.88 16 22 C 0.18 3.39 3.08 45.31 0.14 3.53 16 23 H 0.06 1.33 7.90 -2.39 -0.02 1.31 16 24 C -0.17 -3.51 4.74 -10.79 -0.05 -3.56 16 25 C -0.19 -4.07 10.19 30.62 0.31 -3.76 16 26 C -0.14 -2.09 9.81 30.62 0.30 -1.79 16 27 C -0.26 -11.88 9.04 22.51 0.20 -11.68 16 28 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 29 H 0.12 5.21 8.06 -2.91 -0.02 5.19 16 30 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 31 H 0.13 4.87 6.41 -2.91 -0.02 4.85 16 32 H 0.41 10.57 7.50 -92.71 -0.70 9.88 16 33 H 0.08 1.05 7.59 -2.39 -0.02 1.03 16 34 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.11 0.41 8.14 -2.38 -0.02 0.40 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.09 0.74 7.85 -2.39 -0.02 0.72 16 38 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 39 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.09 2.00 8.04 -2.39 -0.02 1.98 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.12 1.17 8.06 -2.39 -0.02 1.15 16 44 H 0.13 5.66 5.72 -2.91 -0.02 5.65 16 Total: -1.00 -77.67 363.33 3.67 -74.00 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.33 Total: 35.12 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 5.45 Total: -20.31 kcal Atomic # 7 Polarization: -91.92 SS G_CDS: -3.85 Total: -95.78 kcal Atomic # 8 Polarization: -37.15 SS G_CDS: -0.28 Total: -37.42 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -77.67 3.67 -74.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728688174.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.193 kcal (2) G-P(sol) polarization free energy of solvation -77.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds