Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48495 * 109.47388 * 240.00162 * 3 2 1 5 5 H 1.48498 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46613 * 120.00060 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.54260 * 110.03112 * 292.90887 * 21 20 18 23 23 C 1.54963 * 104.16097 * 217.13751 * 22 21 20 24 24 C 1.54893 * 102.77732 * 37.88749 * 23 22 21 25 25 C 1.53878 * 110.03007 * 175.69106 * 21 20 18 26 26 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 27 27 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 30 30 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 31 31 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 32 32 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 33 33 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 34 34 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 35 35 H 1.08999 * 110.01623 * 54.29879 * 21 20 18 36 36 H 1.09004 * 110.49113 * 335.78479 * 22 21 20 37 37 H 1.08997 * 110.48859 * 98.42886 * 22 21 20 38 38 H 1.08999 * 110.72183 * 279.57980 * 23 22 21 39 39 H 1.09003 * 110.92776 * 156.29374 * 23 22 21 40 40 H 1.09000 * 110.48938 * 203.40711 * 24 23 22 41 41 H 1.08998 * 110.59614 * 80.81442 * 24 23 22 42 42 H 1.08994 * 110.02943 * 238.56868 * 25 21 20 43 43 H 1.09004 * 110.02964 * 0.02562 * 25 21 20 44 44 H 1.08004 * 120.11255 * 359.95860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6962 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 6 10.2566 -8.6278 1.9018 23 6 11.5216 -9.4397 2.2785 24 6 12.6695 -8.5681 1.7113 25 6 12.1087 -8.0223 0.3819 26 6 3.4540 -3.4379 0.0919 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -4.7834 0.2483 29 1 1.6778 -6.8475 0.4329 30 1 4.1341 -6.7490 0.4098 31 1 6.1785 -3.5942 0.0918 32 1 8.2237 -4.7223 0.1908 33 1 10.3400 -6.2074 -0.5702 34 1 10.3498 -6.0341 1.2012 35 1 10.1554 -8.7070 -0.2669 36 1 10.0963 -7.8189 2.6147 37 1 9.3833 -9.2787 1.8594 38 1 11.5079 -10.4191 1.8003 39 1 11.6116 -9.5408 3.3601 40 1 13.5562 -9.1756 1.5304 41 1 12.9016 -7.7492 2.3923 42 1 12.4331 -8.6516 -0.4467 43 1 12.4459 -6.9972 0.2276 44 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749447698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = -15.982647 kcal Electronic energy + Delta-G solvation = -24464.203125 eV Core-core repulsion = 20768.475913 eV Total energy + Delta-G solvation = -3695.727212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.07059 -39.09189 -38.13964 -36.95368 -35.85594 -32.88137 -32.26627 -31.65336 -29.80255 -28.95490 -28.71902 -26.23755 -25.34628 -23.45255 -21.68522 -21.08483 -20.78057 -20.30775 -19.72860 -18.20619 -17.50541 -16.79391 -16.68844 -15.97862 -15.58800 -15.19386 -15.08910 -14.60705 -14.34347 -14.03806 -13.77755 -13.74587 -13.63748 -13.55635 -12.85993 -12.74268 -12.44695 -12.24413 -11.73096 -11.56169 -11.40707 -11.33806 -11.24640 -11.09938 -10.91847 -10.91224 -10.90105 -10.83093 -10.73409 -10.51736 -10.17020 -9.91477 -9.46672 -9.33232 -8.84391 -7.90075 -7.28225 -6.48024 -4.08226 1.19334 2.27793 2.44845 2.45943 3.01440 3.09379 3.12575 3.13687 3.92559 4.17378 4.26192 4.36781 4.56671 4.58307 4.79084 4.84010 4.91697 5.04369 5.07788 5.15032 5.17642 5.24858 5.31842 5.36163 5.44918 5.51116 5.59875 5.66957 5.70693 5.75430 5.82044 5.91767 5.99255 6.05605 6.12733 6.18882 6.28459 6.59305 6.73385 6.99913 7.04643 7.15123 7.22594 7.33590 7.56586 7.69926 7.94971 8.37621 8.96954 9.66136 10.69780 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002088 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.523467 B =13409.713051 C =14493.094866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.394 4.394 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.146 3.854 11 C -0.169 4.169 12 C -0.086 4.086 13 C -0.163 4.163 14 C -0.025 4.025 15 C 0.132 3.868 16 N -0.243 5.243 17 N -0.591 5.591 18 C 0.527 3.473 19 O -0.503 6.503 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.125 4.125 25 C -0.121 4.121 26 C -0.201 4.201 27 H 0.271 0.729 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.120 0.880 31 H 0.114 0.886 32 H 0.381 0.619 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.600 -10.734 1.527 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.108 0.892 9 O -0.081 6.081 10 C 0.093 3.907 11 C -0.189 4.189 12 C -0.104 4.104 13 C -0.184 4.184 14 C -0.027 4.027 15 C -0.078 4.078 16 N -0.047 5.047 17 N -0.333 5.333 18 C 0.314 3.686 19 O -0.375 6.375 20 C -0.170 4.170 21 C -0.096 4.096 22 C -0.153 4.153 23 C -0.165 4.165 24 C -0.163 4.163 25 C -0.159 4.159 26 C -0.223 4.223 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.138 0.862 31 H 0.132 0.868 32 H 0.219 0.781 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 21.938 -12.305 1.675 25.210 hybrid contribution 0.936 2.380 -0.176 2.564 sum 22.875 -9.925 1.499 24.980 Atomic orbital electron populations 1.70023 1.05936 1.27800 1.45862 1.25272 0.95836 0.98787 0.96551 0.85802 0.78737 0.79900 0.79100 1.19533 1.20278 1.19534 1.21227 0.91665 0.80845 1.53310 0.89193 1.84013 1.33950 1.11275 1.78833 1.19173 0.89835 0.88336 0.93353 1.20434 0.99911 0.90323 1.08278 1.20655 0.93544 0.96991 0.99244 1.20890 0.94188 0.96631 1.06697 1.17992 0.88021 0.93959 1.02771 1.24648 0.94626 0.93930 0.94623 1.75046 0.89189 1.26322 1.14128 1.47131 1.02633 1.09905 1.73601 1.20668 0.89103 0.82935 0.75930 1.90714 1.72688 1.28225 1.45838 1.21876 0.90468 1.00197 1.04500 1.21559 0.94646 0.94173 0.99228 1.22425 0.98011 0.99646 0.95220 1.22539 0.94833 0.98695 1.00431 1.22361 0.97971 0.99261 0.96687 1.22232 0.94390 1.01281 0.98007 1.21188 0.93763 0.97632 1.09672 0.91937 0.86195 0.86497 0.86196 0.86839 0.78147 0.88651 0.88580 0.89993 0.92048 0.90586 0.91553 0.91726 0.91854 0.91727 0.91576 0.91620 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.76 29.55 -169.99 -5.02 14.74 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 7 C -0.39 -10.56 9.48 30.89 0.29 -10.27 16 8 H 0.09 2.18 5.20 -52.48 -0.27 1.91 16 9 O -0.18 -4.86 9.76 0.01 0.00 -4.86 16 10 C 0.15 3.39 6.64 -39.17 -0.26 3.13 16 11 C -0.17 -3.45 9.98 -39.30 -0.39 -3.84 16 12 C -0.09 -1.54 10.02 -39.67 -0.40 -1.93 16 13 C -0.16 -2.96 9.58 -39.11 -0.37 -3.33 16 14 C -0.02 -0.45 5.87 -105.07 -0.62 -1.07 16 15 C 0.13 2.00 10.75 -14.66 -0.16 1.85 16 16 N -0.24 -3.86 10.15 32.16 0.33 -3.53 16 17 N -0.59 -7.23 6.26 31.22 0.20 -7.03 16 18 C 0.53 6.51 7.73 -10.99 -0.08 6.43 16 19 O -0.50 -8.35 15.12 5.53 0.08 -8.26 16 20 C -0.13 -0.98 4.83 -27.88 -0.13 -1.11 16 21 C -0.08 -0.63 2.55 -89.50 -0.23 -0.86 16 22 C -0.12 -1.05 5.40 -25.04 -0.14 -1.19 16 23 C -0.13 -0.93 6.91 -24.70 -0.17 -1.10 16 24 C -0.13 -0.77 6.83 -25.07 -0.17 -0.94 16 25 C -0.12 -0.75 6.46 -25.61 -0.17 -0.92 16 26 C -0.20 -4.10 8.91 -38.96 -0.35 -4.45 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 29 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 30 H 0.12 2.13 7.55 -52.49 -0.40 1.73 16 31 H 0.11 1.36 8.02 -52.49 -0.42 0.94 16 32 H 0.38 3.20 8.65 -182.59 -1.58 1.62 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.10 0.56 8.02 -51.93 -0.42 0.14 16 35 H 0.08 0.80 7.95 -51.93 -0.41 0.38 16 36 H 0.06 0.56 7.77 -51.93 -0.40 0.16 16 37 H 0.08 0.86 7.63 -51.93 -0.40 0.46 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.33 7.67 -51.93 -0.40 -0.06 16 44 H 0.13 2.59 5.63 -52.48 -0.30 2.30 16 LS Contribution 370.63 15.07 5.59 5.59 Total: -1.00 -32.79 370.63 -9.02 -41.81 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.51 Total: 4.08 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.44 Total: -18.64 kcal Atomic # 7 Polarization: -35.73 SS G_CDS: 1.28 Total: -34.45 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.13 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.79 -9.02 -41.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749447698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.832 kcal (2) G-P(sol) polarization free energy of solvation -32.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds