Wall clock time and date at job start Tue Mar 31 2020 10:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86799 * 120.00109 * 2 1 4 4 H 1.48495 * 109.47388 * 240.00162 * 3 2 1 5 5 H 1.48498 * 109.47103 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46613 * 120.00060 * 3 2 1 7 7 C 1.38653 * 119.99816 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99845 * 180.02562 * 7 2 1 9 9 O 1.34832 * 120.00092 * 359.97438 * 7 2 1 10 10 C 1.35759 * 116.99819 * 185.06205 * 9 7 2 11 11 C 1.39023 * 119.98999 * 174.18296 * 10 9 7 12 12 C 1.38210 * 120.24594 * 179.76269 * 11 10 9 13 13 C 1.38018 * 120.23341 * 0.50979 * 12 11 10 14 14 C 1.39726 * 119.97645 * 359.74466 * 13 12 11 15 15 C 1.47496 * 120.12074 * 180.02562 * 14 13 12 16 16 N 1.29753 * 120.00087 * 359.97438 * 15 14 13 17 17 N 1.40101 * 119.99856 * 180.02562 * 16 15 14 18 18 C 1.34777 * 120.00048 * 179.97438 * 17 16 15 19 19 O 1.21313 * 119.99770 * 0.02562 * 18 17 16 20 20 C 1.50697 * 120.00119 * 179.97438 * 18 17 16 21 21 C 1.53004 * 109.47002 * 180.02562 * 20 18 17 22 22 C 1.54260 * 110.03112 * 292.90887 * 21 20 18 23 23 C 1.54963 * 104.16097 * 217.13751 * 22 21 20 24 24 C 1.54893 * 102.77732 * 37.88749 * 23 22 21 25 25 C 1.53878 * 110.03007 * 175.69106 * 21 20 18 26 26 C 1.38573 * 119.99489 * 354.45449 * 10 9 7 27 27 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 28 28 H 1.08002 * 119.87318 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.88596 * 180.23875 * 12 11 10 30 30 H 1.07997 * 120.01264 * 179.76641 * 13 12 11 31 31 H 1.07999 * 119.99372 * 179.97438 * 15 14 13 32 32 H 0.97005 * 119.99822 * 359.97438 * 17 16 15 33 33 H 1.08998 * 109.47294 * 300.00365 * 20 18 17 34 34 H 1.08998 * 109.47083 * 60.00084 * 20 18 17 35 35 H 1.08999 * 110.01623 * 54.29879 * 21 20 18 36 36 H 1.09004 * 110.49113 * 335.78479 * 22 21 20 37 37 H 1.08997 * 110.48859 * 98.42886 * 22 21 20 38 38 H 1.08999 * 110.72183 * 279.57980 * 23 22 21 39 39 H 1.09003 * 110.92776 * 156.29374 * 23 22 21 40 40 H 1.09000 * 110.48938 * 203.40711 * 24 23 22 41 41 H 1.08998 * 110.59614 * 80.81442 * 24 23 22 42 42 H 1.08994 * 110.02943 * 238.56868 * 25 21 20 43 43 H 1.09004 * 110.02964 * 0.02562 * 25 21 20 44 44 H 1.08004 * 120.11255 * 359.95860 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6962 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2008 -0.0001 9 8 1.3346 -2.3685 -0.0005 10 6 2.0700 -3.5047 0.1057 11 6 1.4343 -4.7344 0.2338 12 6 2.1777 -5.8949 0.3374 13 6 3.5567 -5.8403 0.3249 14 6 4.2056 -4.6090 0.2018 15 6 5.6791 -4.5470 0.1875 16 7 6.3754 -5.6371 0.2898 17 7 7.7751 -5.5781 0.2767 18 6 8.4983 -6.7103 0.3835 19 8 7.9373 -7.7806 0.4905 20 6 10.0039 -6.6470 0.3689 21 6 10.5752 -8.0600 0.5034 22 6 10.2566 -8.6278 1.9018 23 6 11.5216 -9.4397 2.2785 24 6 12.6695 -8.5681 1.7113 25 6 12.1087 -8.0223 0.3819 26 6 3.4540 -3.4379 0.0919 27 1 -0.4851 0.8401 0.0004 28 1 0.3555 -4.7834 0.2483 29 1 1.6778 -6.8475 0.4329 30 1 4.1341 -6.7490 0.4098 31 1 6.1785 -3.5942 0.0918 32 1 8.2237 -4.7223 0.1908 33 1 10.3400 -6.2074 -0.5702 34 1 10.3498 -6.0341 1.2012 35 1 10.1554 -8.7070 -0.2669 36 1 10.0963 -7.8189 2.6147 37 1 9.3833 -9.2787 1.8594 38 1 11.5079 -10.4191 1.8003 39 1 11.6116 -9.5408 3.3601 40 1 13.5562 -9.1756 1.5304 41 1 12.9016 -7.7492 2.3923 42 1 12.4331 -8.6516 -0.4467 43 1 12.4459 -6.9972 0.2276 44 1 3.9495 -2.4831 -0.0038 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749447698.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:36 Heat of formation + Delta-G solvation = -35.798578 kcal Electronic energy + Delta-G solvation = -24465.062408 eV Core-core repulsion = 20768.475913 eV Total energy + Delta-G solvation = -3696.586495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.02124 -40.73765 -38.95301 -38.40527 -37.18083 -34.35805 -33.85243 -32.50589 -31.17756 -30.28190 -29.51961 -27.41079 -26.84834 -24.74562 -23.29150 -21.95843 -21.64232 -21.49134 -20.41786 -19.87178 -18.85756 -18.03269 -17.96372 -16.78381 -16.73998 -16.38842 -16.27851 -15.98851 -15.78500 -15.52209 -15.25157 -14.93984 -14.46612 -14.35932 -14.17381 -14.15444 -13.80227 -13.51004 -13.06751 -12.84063 -12.50131 -12.45246 -12.39317 -12.14484 -12.12498 -11.92770 -11.84578 -11.69951 -11.52873 -11.39046 -11.29591 -11.22665 -10.90512 -10.81910 -10.49860 -9.34297 -8.94817 -8.42270 -6.10957 -0.18169 0.70091 1.24514 1.39457 1.46790 1.50330 1.55471 1.87772 2.21315 2.89666 3.21267 3.42782 3.52257 3.63682 3.70442 3.77346 3.89282 4.02973 4.26942 4.32385 4.36055 4.37343 4.39959 4.57958 4.60118 4.61943 4.71795 4.78481 4.84542 4.89708 4.96461 5.05494 5.11881 5.12689 5.13029 5.19600 5.27893 5.37554 5.51307 5.54443 5.61228 5.65501 5.65798 6.04283 6.12530 6.12814 6.50208 7.02099 7.39860 7.81510 8.80434 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.002088 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.523467 B =13409.713051 C =14493.094866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.017 2.983 4 H -0.255 1.255 5 H -0.277 1.277 6 H -0.256 1.256 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.229 6.229 10 C 0.112 3.888 11 C -0.182 4.182 12 C -0.075 4.075 13 C -0.158 4.158 14 C -0.021 4.021 15 C 0.129 3.871 16 N -0.268 5.268 17 N -0.580 5.580 18 C 0.521 3.479 19 O -0.552 6.552 20 C -0.118 4.118 21 C -0.078 4.078 22 C -0.118 4.118 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.201 4.201 27 H 0.271 0.729 28 H 0.120 0.880 29 H 0.153 0.847 30 H 0.129 0.871 31 H 0.149 0.851 32 H 0.405 0.595 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.086 0.914 44 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.749 -10.486 1.522 28.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.837 3.163 4 H -0.179 1.179 5 H -0.202 1.202 6 H -0.180 1.180 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.136 6.136 10 C 0.062 3.938 11 C -0.202 4.202 12 C -0.093 4.093 13 C -0.179 4.179 14 C -0.023 4.023 15 C -0.081 4.081 16 N -0.072 5.072 17 N -0.325 5.325 18 C 0.311 3.689 19 O -0.427 6.427 20 C -0.159 4.159 21 C -0.098 4.098 22 C -0.156 4.156 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.153 4.153 26 C -0.223 4.223 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.170 0.830 30 H 0.147 0.853 31 H 0.166 0.834 32 H 0.245 0.755 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 26.137 -12.087 1.668 28.844 hybrid contribution -0.208 1.926 -0.142 1.942 sum 25.929 -10.161 1.526 27.890 Atomic orbital electron populations 1.70186 1.08091 1.28776 1.48862 1.26588 0.96809 1.02795 0.95960 0.84660 0.77381 0.74260 0.80025 1.17913 1.20228 1.18010 1.21811 0.92695 0.81231 1.53106 0.87476 1.83985 1.35652 1.12443 1.81471 1.19694 0.91245 0.88106 0.94776 1.20652 1.00375 0.90452 1.08765 1.21003 0.93529 0.97478 0.97265 1.21180 0.94452 0.97084 1.05154 1.18209 0.90050 0.93021 1.01050 1.24504 0.92989 0.95377 0.95201 1.74884 0.91707 1.27478 1.13178 1.47082 1.01111 1.11307 1.72972 1.21712 0.90909 0.82044 0.74256 1.90706 1.73932 1.30081 1.48011 1.21969 0.86327 1.00345 1.07236 1.21551 0.96309 0.94222 0.97677 1.22396 0.97614 0.99383 0.96201 1.22544 0.94629 0.98605 1.00766 1.22368 0.97561 0.99350 0.96712 1.22206 0.92304 1.02679 0.98112 1.21238 0.92831 0.98738 1.09457 0.91973 0.86179 0.82981 0.85287 0.83417 0.75473 0.85521 0.85805 0.92204 0.92140 0.93852 0.91966 0.91391 0.90906 0.90856 0.91261 0.89533 0.84529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.16 13.67 21.61 0.30 -54.86 16 2 C -0.02 -1.31 5.49 84.83 0.47 -0.85 16 3 Si 1.02 40.76 29.55 68.60 2.03 42.79 16 4 H -0.25 -9.46 7.11 99.48 0.71 -8.75 16 5 H -0.28 -10.92 7.11 99.48 0.71 -10.21 16 6 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 7 C -0.41 -22.77 9.48 67.92 0.64 -22.13 16 8 H 0.11 5.24 5.20 -2.91 -0.02 5.23 16 9 O -0.23 -13.20 9.76 -22.86 -0.22 -13.43 16 10 C 0.11 5.34 6.64 22.54 0.15 5.48 16 11 C -0.18 -7.55 9.98 22.45 0.22 -7.33 16 12 C -0.07 -2.58 10.02 22.21 0.22 -2.35 16 13 C -0.16 -5.48 9.58 22.58 0.22 -5.26 16 14 C -0.02 -0.73 5.87 -20.15 -0.12 -0.85 16 15 C 0.13 3.60 10.75 87.44 0.94 4.54 16 16 N -0.27 -7.90 10.15 -52.16 -0.53 -8.43 16 17 N -0.58 -12.50 6.26 -173.51 -1.09 -13.58 16 18 C 0.52 11.79 7.73 87.66 0.68 12.46 16 19 O -0.55 -18.13 15.12 -3.13 -0.05 -18.18 16 20 C -0.12 -1.38 4.83 29.85 0.14 -1.23 16 21 C -0.08 -1.14 2.55 -10.07 -0.03 -1.16 16 22 C -0.12 -2.08 5.40 31.69 0.17 -1.91 16 23 C -0.13 -1.71 6.91 31.91 0.22 -1.49 16 24 C -0.12 -1.15 6.83 31.67 0.22 -0.94 16 25 C -0.12 -1.05 6.46 31.32 0.20 -0.85 16 26 C -0.20 -8.17 8.91 22.67 0.20 -7.97 16 27 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 28 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 29 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 30 H 0.13 4.32 7.55 -2.91 -0.02 4.30 16 31 H 0.15 3.00 8.02 -2.91 -0.02 2.98 16 32 H 0.40 5.16 8.65 -213.31 -1.85 3.31 16 33 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.12 0.84 8.02 -2.39 -0.02 0.83 16 35 H 0.06 1.13 7.95 -2.39 -0.02 1.11 16 36 H 0.06 1.04 7.77 -2.39 -0.02 1.02 16 37 H 0.04 1.03 7.63 -2.39 -0.02 1.01 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 43 H 0.09 0.46 7.67 -2.39 -0.02 0.45 16 44 H 0.14 5.31 5.63 -2.91 -0.02 5.29 16 Total: -1.00 -76.66 370.63 4.16 -72.50 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.83 Total: 25.00 kcal Atomic # 6 Polarization: -36.37 SS G_CDS: 4.55 Total: -31.82 kcal Atomic # 7 Polarization: -75.55 SS G_CDS: -1.32 Total: -76.87 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.27 Total: -31.60 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Total: -76.66 4.16 -72.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749447698.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.703 kcal (2) G-P(sol) polarization free energy of solvation -76.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds