Wall clock time and date at job start Tue Mar 31 2020 10:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48493 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47187 * 300.00054 * 3 2 1 6 6 H 1.48503 * 109.46920 * 59.99899 * 3 2 1 7 7 C 1.38653 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00421 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.35757 * 117.00289 * 174.97458 * 9 7 2 11 11 C 1.38957 * 120.02656 * 5.67024 * 10 9 7 12 12 C 1.38123 * 120.06479 * 180.23000 * 11 10 9 13 13 C 1.38204 * 120.14181 * 359.49814 * 12 11 10 14 14 C 1.38920 * 120.06294 * 0.22695 * 13 12 11 15 15 N 1.39949 * 120.03439 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99945 * 144.87373 * 15 14 13 17 17 O 1.21586 * 120.00267 * 4.50236 * 16 15 14 18 18 N 1.34774 * 120.00003 * 184.50282 * 16 15 14 19 19 C 1.47251 * 135.94322 * 359.62215 * 18 16 15 20 20 C 1.52767 * 87.63697 * 153.80616 * 19 18 16 21 21 C 1.47253 * 135.94742 * 180.02562 * 18 16 15 22 22 C 1.53353 * 115.68439 * 141.55327 * 20 19 18 23 23 C 1.55111 * 103.91453 * 108.95591 * 22 20 19 24 24 C 1.54974 * 102.89772 * 37.09592 * 23 22 20 25 25 C 1.52955 * 116.25088 * 269.30263 * 20 19 18 26 26 C 1.38730 * 120.03638 * 185.37578 * 10 9 7 27 27 H 0.97005 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.96892 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.93003 * 179.76926 * 12 11 10 30 30 H 1.07992 * 119.96835 * 180.25153 * 13 12 11 31 31 H 0.96996 * 119.99515 * 324.87025 * 15 14 13 32 32 H 1.09002 * 113.51413 * 268.47996 * 19 18 16 33 33 H 1.08997 * 113.50820 * 39.05085 * 19 18 16 34 34 H 1.09001 * 113.50383 * 320.95535 * 21 18 16 35 35 H 1.09001 * 113.50766 * 91.45771 * 21 18 16 36 36 H 1.09008 * 110.53639 * 227.55809 * 22 20 19 37 37 H 1.09002 * 110.54268 * 350.34596 * 22 20 19 38 38 H 1.09001 * 110.73033 * 278.74430 * 23 22 20 39 39 H 1.09006 * 110.73216 * 155.44389 * 23 22 20 40 40 H 1.09001 * 110.47763 * 203.87805 * 24 23 22 41 41 H 1.08994 * 110.47906 * 81.25527 * 24 23 22 42 42 H 1.09002 * 110.11099 * 347.27451 * 25 20 19 43 43 H 1.08996 * 110.11205 * 108.85208 * 25 20 19 44 44 H 1.08001 * 120.06944 * 0.04197 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5047 -0.1049 11 6 3.4578 -3.4389 -0.0878 12 6 4.2067 -4.5941 -0.1998 13 6 3.5788 -5.8195 -0.3187 14 6 2.1915 -5.8923 -0.3306 15 7 1.5563 -7.1335 -0.4505 16 6 0.3974 -7.3628 0.1982 17 8 -0.1385 -6.4665 0.8209 18 7 -0.1676 -8.5857 0.1566 19 6 0.1542 -9.8794 -0.4688 20 6 -0.6474 -10.5467 0.6474 21 6 -1.3803 -9.2106 0.7109 22 6 -1.4945 -11.7539 0.2270 23 6 -0.7574 -12.9645 0.8572 24 6 -0.2665 -12.4018 2.2152 25 6 0.1368 -10.9440 1.8991 26 6 1.4364 -4.7332 -0.2236 27 1 -0.4849 0.8401 0.0004 28 1 3.9515 -2.4834 0.0097 29 1 5.2853 -4.5401 -0.1901 30 1 4.1670 -6.7213 -0.4020 31 1 1.9501 -7.8287 -1.0004 32 1 -0.2876 -10.0065 -1.4571 33 1 1.2169 -10.1206 -0.4467 34 1 -1.6100 -8.8884 1.7265 35 1 -2.2417 -9.1539 0.0453 36 1 -2.5048 -11.6704 0.6279 37 1 -1.5193 -11.8443 -0.8590 38 1 0.0865 -13.2676 0.2375 39 1 -1.4439 -13.7973 1.0102 40 1 0.5944 -12.9666 2.5731 41 1 -1.0708 -12.4241 2.9504 42 1 1.2078 -10.8850 1.7048 43 1 -0.1292 -10.2917 2.7308 44 1 0.3578 -4.7872 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000779405058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:56 Heat of formation + Delta-G solvation = 10.499011 kcal Electronic energy + Delta-G solvation = -25641.802825 eV Core-core repulsion = 21947.223943 eV Total energy + Delta-G solvation = -3694.578881 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.21817 -39.61177 -38.39128 -36.52645 -35.73957 -33.94956 -32.18634 -30.22449 -29.22779 -29.06081 -27.99733 -26.38490 -25.31747 -24.85320 -22.15736 -21.30354 -21.12024 -19.96806 -18.75132 -18.25489 -17.88017 -16.98988 -16.34804 -15.95172 -15.50949 -15.22195 -14.99004 -14.64710 -14.49290 -14.11966 -13.95989 -13.62590 -13.58796 -13.40909 -13.00185 -12.75023 -12.45808 -11.96485 -11.79010 -11.66397 -11.47431 -11.45485 -11.43495 -11.24224 -11.09360 -10.97512 -10.90334 -10.72124 -10.54410 -10.40177 -9.83308 -9.68132 -9.13608 -8.78257 -8.75736 -7.59458 -7.11478 -6.36558 -3.95515 2.11613 2.41301 2.49530 3.17085 3.18271 3.24359 3.37834 3.78703 3.88333 4.04202 4.16435 4.31213 4.64241 4.69718 4.76882 4.96177 5.07051 5.12805 5.15064 5.18196 5.28041 5.31615 5.36818 5.45556 5.52456 5.53274 5.59975 5.63398 5.68312 5.75559 5.81406 5.89796 5.96067 5.99125 6.16306 6.30050 6.47553 6.70854 6.95559 7.10263 7.15598 7.39984 7.41088 7.55632 7.88949 8.07800 8.11090 8.75435 9.08419 9.81182 10.81615 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.002477 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.197616 B =11300.251546 C =11920.877007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.037 3.963 3 Si 0.942 3.058 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.174 6.174 10 C 0.167 3.833 11 C -0.246 4.246 12 C -0.059 4.059 13 C -0.237 4.237 14 C 0.193 3.807 15 N -0.678 5.678 16 C 0.729 3.271 17 O -0.557 6.557 18 N -0.665 5.665 19 C 0.109 3.891 20 C -0.099 4.099 21 C 0.137 3.863 22 C -0.108 4.108 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.097 4.097 26 C -0.186 4.186 27 H 0.269 0.731 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.400 0.600 32 H 0.084 0.916 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.945 -25.955 -0.826 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.167 4.167 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.110 0.890 9 O -0.077 6.077 10 C 0.113 3.887 11 C -0.266 4.266 12 C -0.078 4.078 13 C -0.258 4.258 14 C 0.099 3.901 15 N -0.325 5.325 16 C 0.433 3.567 17 O -0.432 6.432 18 N -0.406 5.406 19 C -0.014 4.014 20 C -0.100 4.100 21 C 0.014 3.986 22 C -0.146 4.146 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.134 4.134 26 C -0.208 4.208 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.234 0.766 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.187 -24.841 -0.302 24.844 hybrid contribution 0.748 0.508 -0.376 0.980 sum 0.935 -24.333 -0.679 24.360 Atomic orbital electron populations 1.70076 1.05960 1.27437 1.46156 1.25309 0.95838 0.98831 0.96694 0.85639 0.79106 0.80423 0.78175 1.19099 1.20204 1.20198 1.21397 0.91835 0.80827 1.52613 0.88951 1.84000 1.34243 1.11336 1.78166 1.19142 0.89981 0.87808 0.91782 1.21171 0.93738 0.99084 1.12612 1.20474 0.98320 0.91675 0.97283 1.20233 0.91753 0.97674 1.16167 1.16963 0.90533 0.82680 0.99912 1.42380 1.23942 1.15192 1.50971 1.15279 0.80779 0.80554 0.80118 1.91026 1.63593 1.41380 1.47165 1.48724 1.27250 1.08384 1.56254 1.23087 1.00671 0.80948 0.96707 1.22229 0.97181 0.94089 0.96484 1.22818 0.88187 0.87548 1.00069 1.22168 0.98728 0.92954 1.00718 1.22527 0.99873 0.97290 0.96447 1.22431 1.00917 0.95452 0.97424 1.21790 0.99571 0.96281 0.95802 1.20199 1.00747 0.88708 1.11139 0.92134 0.85470 0.87059 0.87531 0.76601 0.89830 0.90661 0.90243 0.89956 0.90685 0.91010 0.91400 0.91510 0.91606 0.91499 0.91298 0.91077 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.39 13.67 55.48 0.76 -25.63 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 3 Si 0.94 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.39 -11.40 9.49 30.89 0.29 -11.10 16 8 H 0.09 2.48 5.20 -52.49 -0.27 2.20 16 9 O -0.17 -5.33 9.75 0.04 0.00 -5.32 16 10 C 0.17 4.39 6.64 -39.13 -0.26 4.13 16 11 C -0.25 -5.62 9.16 -39.36 -0.36 -5.98 16 12 C -0.06 -1.11 10.03 -39.64 -0.40 -1.51 16 13 C -0.24 -4.26 9.96 -39.34 -0.39 -4.66 16 14 C 0.19 3.86 6.30 -83.71 -0.53 3.33 16 15 N -0.68 -11.02 5.34 -14.24 -0.08 -11.10 16 16 C 0.73 12.92 8.63 -86.92 -0.75 12.17 16 17 O -0.56 -12.84 14.55 5.29 0.08 -12.76 16 18 N -0.67 -8.46 3.67 -190.81 -0.70 -9.16 16 19 C 0.11 0.87 7.53 -7.79 -0.06 0.81 16 20 C -0.10 -0.72 1.24 -154.72 -0.19 -0.91 16 21 C 0.14 1.39 7.88 -7.91 -0.06 1.32 16 22 C -0.11 -0.56 6.24 -25.43 -0.16 -0.72 16 23 C -0.12 -0.61 6.91 -24.57 -0.17 -0.78 16 24 C -0.12 -0.72 6.85 -24.89 -0.17 -0.89 16 25 C -0.10 -0.72 6.33 -25.95 -0.16 -0.89 16 26 C -0.19 -4.55 8.64 -39.21 -0.34 -4.89 16 27 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.13 2.87 5.63 -52.49 -0.30 2.57 16 29 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.40 4.86 8.54 -40.82 -0.35 4.52 16 32 H 0.08 0.54 7.96 -51.93 -0.41 0.13 16 33 H 0.08 0.52 7.93 -51.93 -0.41 0.11 16 34 H 0.08 0.88 7.91 -51.93 -0.41 0.47 16 35 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.38 8.13 -51.92 -0.42 -0.05 16 37 H 0.07 0.32 7.83 -51.93 -0.41 -0.09 16 38 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.54 7.82 -51.93 -0.41 0.13 16 43 H 0.07 0.63 7.80 -51.93 -0.40 0.22 16 44 H 0.13 3.57 6.23 -52.49 -0.33 3.24 16 LS Contribution 361.31 15.07 5.44 5.44 Total: -1.00 -36.06 361.31 -9.54 -45.60 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -6.21 Total: 6.32 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -3.81 Total: -9.58 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.02 Total: -45.89 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.08 Total: -18.09 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.06 -9.54 -45.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779405058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.099 kcal (2) G-P(sol) polarization free energy of solvation -36.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds