Wall clock time and date at job start Tue Mar 31 2020 10:47:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31560 * 1
3 3 Si 1.86800 * 120.00182 * 2 1
4 4 H 1.48493 * 109.47168 * 179.97438 * 3 2 1
5 5 H 1.48502 * 109.47187 * 300.00054 * 3 2 1
6 6 H 1.48503 * 109.46920 * 59.99899 * 3 2 1
7 7 C 1.38653 * 119.99850 * 179.97438 * 2 1 3
8 8 H 1.07998 * 120.00421 * 179.97438 * 7 2 1
9 9 O 1.34826 * 119.99831 * 0.02562 * 7 2 1
10 10 C 1.35757 * 117.00289 * 174.97458 * 9 7 2
11 11 C 1.38957 * 120.02656 * 5.67024 * 10 9 7
12 12 C 1.38123 * 120.06479 * 180.23000 * 11 10 9
13 13 C 1.38204 * 120.14181 * 359.49814 * 12 11 10
14 14 C 1.38920 * 120.06294 * 0.22695 * 13 12 11
15 15 N 1.39949 * 120.03439 * 180.02562 * 14 13 12
16 16 C 1.34772 * 119.99945 * 144.87373 * 15 14 13
17 17 O 1.21586 * 120.00267 * 4.50236 * 16 15 14
18 18 N 1.34774 * 120.00003 * 184.50282 * 16 15 14
19 19 C 1.47251 * 135.94322 * 359.62215 * 18 16 15
20 20 C 1.52767 * 87.63697 * 153.80616 * 19 18 16
21 21 C 1.47253 * 135.94742 * 180.02562 * 18 16 15
22 22 C 1.53353 * 115.68439 * 141.55327 * 20 19 18
23 23 C 1.55111 * 103.91453 * 108.95591 * 22 20 19
24 24 C 1.54974 * 102.89772 * 37.09592 * 23 22 20
25 25 C 1.52955 * 116.25088 * 269.30263 * 20 19 18
26 26 C 1.38730 * 120.03638 * 185.37578 * 10 9 7
27 27 H 0.97005 * 119.99395 * 359.97438 * 1 2 3
28 28 H 1.07999 * 119.96892 * 0.02562 * 11 10 9
29 29 H 1.07998 * 119.93003 * 179.76926 * 12 11 10
30 30 H 1.07992 * 119.96835 * 180.25153 * 13 12 11
31 31 H 0.96996 * 119.99515 * 324.87025 * 15 14 13
32 32 H 1.09002 * 113.51413 * 268.47996 * 19 18 16
33 33 H 1.08997 * 113.50820 * 39.05085 * 19 18 16
34 34 H 1.09001 * 113.50383 * 320.95535 * 21 18 16
35 35 H 1.09001 * 113.50766 * 91.45771 * 21 18 16
36 36 H 1.09008 * 110.53639 * 227.55809 * 22 20 19
37 37 H 1.09002 * 110.54268 * 350.34596 * 22 20 19
38 38 H 1.09001 * 110.73033 * 278.74430 * 23 22 20
39 39 H 1.09006 * 110.73216 * 155.44389 * 23 22 20
40 40 H 1.09001 * 110.47763 * 203.87805 * 24 23 22
41 41 H 1.08994 * 110.47906 * 81.25527 * 24 23 22
42 42 H 1.09002 * 110.11099 * 347.27451 * 25 20 19
43 43 H 1.08996 * 110.11205 * 108.85208 * 25 20 19
44 44 H 1.08001 * 120.06944 * 0.04197 * 26 10 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3156 0.0000 0.0000
3 14 2.2497 1.6177 0.0000
4 1 3.7096 1.3463 0.0006
5 1 1.8909 2.3964 -1.2125
6 1 1.8909 2.3964 1.2125
7 6 2.0088 -1.2008 0.0005
8 1 3.0888 -1.2009 0.0001
9 8 1.3346 -2.3684 0.0005
10 6 2.0699 -3.5047 -0.1049
11 6 3.4578 -3.4389 -0.0878
12 6 4.2067 -4.5941 -0.1998
13 6 3.5788 -5.8195 -0.3187
14 6 2.1915 -5.8923 -0.3306
15 7 1.5563 -7.1335 -0.4505
16 6 0.3974 -7.3628 0.1982
17 8 -0.1385 -6.4665 0.8209
18 7 -0.1676 -8.5857 0.1566
19 6 0.1542 -9.8794 -0.4688
20 6 -0.6474 -10.5467 0.6474
21 6 -1.3803 -9.2106 0.7109
22 6 -1.4945 -11.7539 0.2270
23 6 -0.7574 -12.9645 0.8572
24 6 -0.2665 -12.4018 2.2152
25 6 0.1368 -10.9440 1.8991
26 6 1.4364 -4.7332 -0.2236
27 1 -0.4849 0.8401 0.0004
28 1 3.9515 -2.4834 0.0097
29 1 5.2853 -4.5401 -0.1901
30 1 4.1670 -6.7213 -0.4020
31 1 1.9501 -7.8287 -1.0004
32 1 -0.2876 -10.0065 -1.4571
33 1 1.2169 -10.1206 -0.4467
34 1 -1.6100 -8.8884 1.7265
35 1 -2.2417 -9.1539 0.0453
36 1 -2.5048 -11.6704 0.6279
37 1 -1.5193 -11.8443 -0.8590
38 1 0.0865 -13.2676 0.2375
39 1 -1.4439 -13.7973 1.0102
40 1 0.5944 -12.9666 2.5731
41 1 -1.0708 -12.4241 2.9504
42 1 1.2078 -10.8850 1.7048
43 1 -0.1292 -10.2917 2.7308
44 1 0.3578 -4.7872 -0.2330
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000779405058.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:47:56
Heat of formation + Delta-G solvation = -14.106352 kcal
Electronic energy + Delta-G solvation = -25642.869793 eV
Core-core repulsion = 21947.223943 eV
Total energy + Delta-G solvation = -3695.645850 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.18991 -41.05888 -40.03892 -38.18640 -36.57014 -35.53140 -34.26647 -31.56109
-30.76120 -29.69053 -29.30889 -27.35465 -27.14988 -25.79172 -23.74872 -23.01408
-21.63754 -21.27176 -20.01608 -19.44058 -19.28395 -18.69590 -17.50794 -17.09005
-16.76024 -16.57199 -16.29068 -16.06786 -15.86119 -15.50814 -15.46290 -15.11274
-14.72882 -14.37004 -14.27024 -14.23479 -13.60726 -13.57394 -13.22175 -12.95665
-12.71626 -12.59696 -12.49923 -12.37057 -12.08860 -12.00594 -11.90459 -11.79088
-11.46248 -11.35247 -11.34511 -11.18847 -10.90965 -10.78067 -9.86839 -9.30582
-8.86198 -8.47132 -6.16930 0.44247 0.69789 1.28862 1.34274 1.43960
1.54310 1.98893 2.17463 2.73568 2.83107 3.15845 3.16876 3.50882
3.59570 3.75681 4.04160 4.14141 4.26533 4.34863 4.39534 4.41292
4.42229 4.52458 4.52927 4.59553 4.68190 4.71681 4.77065 4.78463
4.88718 5.02824 5.03856 5.08044 5.11337 5.15406 5.29182 5.32616
5.41599 5.44240 5.46728 5.55363 5.62857 5.73470 6.03124 6.13599
6.21088 6.86664 6.96377 7.42511 7.79928 8.77341
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.028443 B = 0.002477 C = 0.002348
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 984.197616 B =11300.251546 C =11920.877007
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.927 5.927
2 C -0.030 4.030
3 Si 1.026 2.974
4 H -0.245 1.245
5 H -0.267 1.267
6 H -0.270 1.270
7 C -0.413 4.413
8 H 0.108 0.892
9 O -0.237 6.237
10 C 0.127 3.873
11 C -0.254 4.254
12 C -0.046 4.046
13 C -0.204 4.204
14 C 0.200 3.800
15 N -0.662 5.662
16 C 0.719 3.281
17 O -0.624 6.624
18 N -0.667 5.667
19 C 0.111 3.889
20 C -0.082 4.082
21 C 0.123 3.877
22 C -0.103 4.103
23 C -0.119 4.119
24 C -0.123 4.123
25 C -0.101 4.101
26 C -0.215 4.215
27 H 0.272 0.728
28 H 0.125 0.875
29 H 0.163 0.837
30 H 0.164 0.836
31 H 0.424 0.576
32 H 0.109 0.891
33 H 0.096 0.904
34 H 0.058 0.942
35 H 0.097 0.903
36 H 0.077 0.923
37 H 0.088 0.912
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.071 0.929
41 H 0.064 0.936
42 H 0.069 0.931
43 H 0.048 0.952
44 H 0.095 0.905
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.351 -29.480 -2.022 29.868
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.565 5.565
2 C -0.227 4.227
3 Si 0.845 3.155
4 H -0.168 1.168
5 H -0.192 1.192
6 H -0.195 1.195
7 C -0.489 4.489
8 H 0.126 0.874
9 O -0.144 6.144
10 C 0.076 3.924
11 C -0.274 4.274
12 C -0.064 4.064
13 C -0.225 4.225
14 C 0.105 3.895
15 N -0.311 5.311
16 C 0.423 3.577
17 O -0.504 6.504
18 N -0.406 5.406
19 C -0.010 4.010
20 C -0.083 4.083
21 C 0.000 4.000
22 C -0.141 4.141
23 C -0.156 4.156
24 C -0.160 4.160
25 C -0.139 4.139
26 C -0.237 4.237
27 H 0.081 0.919
28 H 0.143 0.857
29 H 0.181 0.819
30 H 0.181 0.819
31 H 0.263 0.737
32 H 0.127 0.873
33 H 0.114 0.886
34 H 0.077 0.923
35 H 0.115 0.885
36 H 0.096 0.904
37 H 0.107 0.893
38 H 0.095 0.905
39 H 0.095 0.905
40 H 0.090 0.910
41 H 0.083 0.917
42 H 0.088 0.912
43 H 0.067 0.933
44 H 0.114 0.886
Dipole moment (debyes) X Y Z Total
from point charges 3.626 -28.526 -1.534 28.797
hybrid contribution -0.275 1.174 0.007 1.206
sum 3.350 -27.352 -1.527 27.599
Atomic orbital electron populations
1.70250 1.08373 1.28725 1.49157 1.26773 0.96900 1.03146 0.95842
0.84433 0.78373 0.74220 0.78488 1.16840 1.19245 1.19482 1.21988
0.92762 0.81205 1.52933 0.87448 1.83968 1.36320 1.12770 1.81316
1.19669 0.91811 0.87243 0.93692 1.21329 0.92280 1.00914 1.12906
1.21040 1.00631 0.90223 0.94528 1.20856 0.90641 0.99551 1.11427
1.17126 0.91566 0.82637 0.98186 1.42140 1.23571 1.14395 1.51005
1.15579 0.80905 0.81385 0.79833 1.90996 1.65304 1.44190 1.49921
1.48854 1.27846 1.07945 1.55922 1.23461 1.02411 0.77408 0.97731
1.22122 0.96629 0.93296 0.96228 1.23167 0.88428 0.89058 0.99310
1.22182 0.98377 0.91672 1.01833 1.22525 1.00297 0.97208 0.95598
1.22421 1.01168 0.94182 0.98239 1.21821 0.99615 0.97216 0.95209
1.20180 0.99460 0.90359 1.13689 0.91906 0.85686 0.81905 0.81863
0.73718 0.87329 0.88605 0.92305 0.88545 0.90439 0.89324 0.90491
0.90502 0.90980 0.91726 0.91237 0.93297 0.88639
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -60.80 13.67 21.61 0.30 -60.51 16
2 C -0.03 -1.81 5.49 84.83 0.47 -1.35 16
3 Si 1.03 44.89 29.55 68.60 2.03 46.92 16
4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16
5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16
6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16
7 C -0.41 -25.56 9.49 67.92 0.64 -24.91 16
8 H 0.11 5.98 5.20 -2.91 -0.02 5.97 16
9 O -0.24 -15.75 9.75 -22.78 -0.22 -15.97 16
10 C 0.13 7.06 6.64 22.56 0.15 7.21 16
11 C -0.25 -11.60 9.16 22.41 0.21 -11.40 16
12 C -0.05 -1.56 10.03 22.23 0.22 -1.33 16
13 C -0.20 -6.42 9.96 22.43 0.22 -6.20 16
14 C 0.20 7.81 6.30 38.13 0.24 8.05 16
15 N -0.66 -20.55 5.34 -317.23 -1.69 -22.24 16
16 C 0.72 25.96 8.63 179.06 1.55 27.51 16
17 O -0.62 -30.95 14.55 -3.99 -0.06 -31.01 16
18 N -0.67 -16.48 3.67 -875.87 -3.21 -19.70 16
19 C 0.11 1.40 7.53 83.54 0.63 2.03 16
20 C -0.08 -1.01 1.24 -52.31 -0.07 -1.07 16
21 C 0.12 2.47 7.88 83.46 0.66 3.12 16
22 C -0.10 -0.74 6.24 31.44 0.20 -0.54 16
23 C -0.12 -0.74 6.91 31.99 0.22 -0.52 16
24 C -0.12 -1.14 6.85 31.79 0.22 -0.92 16
25 C -0.10 -1.36 6.33 31.10 0.20 -1.16 16
26 C -0.21 -11.15 8.64 22.51 0.19 -10.95 16
27 H 0.27 16.23 8.31 -92.70 -0.77 15.46 16
28 H 0.13 5.66 5.63 -2.91 -0.02 5.64 16
29 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16
30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16
31 H 0.42 8.75 8.54 -92.71 -0.79 7.96 16
32 H 0.11 0.93 7.96 -2.39 -0.02 0.92 16
33 H 0.10 0.88 7.93 -2.39 -0.02 0.86 16
34 H 0.06 1.41 7.91 -2.39 -0.02 1.39 16
35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16
36 H 0.08 0.57 8.13 -2.38 -0.02 0.55 16
37 H 0.09 0.40 7.83 -2.39 -0.02 0.38 16
38 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16
39 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16
40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16
41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16
42 H 0.07 0.93 7.82 -2.39 -0.02 0.91 16
43 H 0.05 0.87 7.80 -2.39 -0.02 0.86 16
44 H 0.10 5.64 6.23 -2.91 -0.02 5.62 16
Total: -1.00 -90.92 361.31 3.32 -87.61
By element:
Atomic # 1 Polarization: 27.09 SS G_CDS: 0.23 Total: 27.33 kcal
Atomic # 6 Polarization: -18.38 SS G_CDS: 5.95 Total: -12.43 kcal
Atomic # 7 Polarization: -97.83 SS G_CDS: -4.61 Total: -102.44 kcal
Atomic # 8 Polarization: -46.70 SS G_CDS: -0.28 Total: -46.98 kcal
Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal
Total: -90.92 3.32 -87.61 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000779405058.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.500 kcal
(2) G-P(sol) polarization free energy of solvation -90.922 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.606 kcal
(6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds