Wall clock time and date at job start Tue Mar 31 2020 10:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48493 * 109.47168 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47187 * 300.00054 * 3 2 1 6 6 H 1.48503 * 109.46920 * 59.99899 * 3 2 1 7 7 C 1.38653 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00421 * 179.97438 * 7 2 1 9 9 O 1.34826 * 119.99831 * 0.02562 * 7 2 1 10 10 C 1.35757 * 117.00289 * 174.97458 * 9 7 2 11 11 C 1.38957 * 120.02656 * 5.67024 * 10 9 7 12 12 C 1.38123 * 120.06479 * 180.23000 * 11 10 9 13 13 C 1.38204 * 120.14181 * 359.49814 * 12 11 10 14 14 C 1.38920 * 120.06294 * 0.22695 * 13 12 11 15 15 N 1.39949 * 120.03439 * 180.02562 * 14 13 12 16 16 C 1.34772 * 119.99945 * 144.87373 * 15 14 13 17 17 O 1.21586 * 120.00267 * 4.50236 * 16 15 14 18 18 N 1.34774 * 120.00003 * 184.50282 * 16 15 14 19 19 C 1.47251 * 135.94322 * 359.62215 * 18 16 15 20 20 C 1.52767 * 87.63697 * 153.80616 * 19 18 16 21 21 C 1.47253 * 135.94742 * 180.02562 * 18 16 15 22 22 C 1.53353 * 115.68439 * 141.55327 * 20 19 18 23 23 C 1.55111 * 103.91453 * 108.95591 * 22 20 19 24 24 C 1.54974 * 102.89772 * 37.09592 * 23 22 20 25 25 C 1.52955 * 116.25088 * 269.30263 * 20 19 18 26 26 C 1.38730 * 120.03638 * 185.37578 * 10 9 7 27 27 H 0.97005 * 119.99395 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.96892 * 0.02562 * 11 10 9 29 29 H 1.07998 * 119.93003 * 179.76926 * 12 11 10 30 30 H 1.07992 * 119.96835 * 180.25153 * 13 12 11 31 31 H 0.96996 * 119.99515 * 324.87025 * 15 14 13 32 32 H 1.09002 * 113.51413 * 268.47996 * 19 18 16 33 33 H 1.08997 * 113.50820 * 39.05085 * 19 18 16 34 34 H 1.09001 * 113.50383 * 320.95535 * 21 18 16 35 35 H 1.09001 * 113.50766 * 91.45771 * 21 18 16 36 36 H 1.09008 * 110.53639 * 227.55809 * 22 20 19 37 37 H 1.09002 * 110.54268 * 350.34596 * 22 20 19 38 38 H 1.09001 * 110.73033 * 278.74430 * 23 22 20 39 39 H 1.09006 * 110.73216 * 155.44389 * 23 22 20 40 40 H 1.09001 * 110.47763 * 203.87805 * 24 23 22 41 41 H 1.08994 * 110.47906 * 81.25527 * 24 23 22 42 42 H 1.09002 * 110.11099 * 347.27451 * 25 20 19 43 43 H 1.08996 * 110.11205 * 108.85208 * 25 20 19 44 44 H 1.08001 * 120.06944 * 0.04197 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 0.0006 5 1 1.8909 2.3964 -1.2125 6 1 1.8909 2.3964 1.2125 7 6 2.0088 -1.2008 0.0005 8 1 3.0888 -1.2009 0.0001 9 8 1.3346 -2.3684 0.0005 10 6 2.0699 -3.5047 -0.1049 11 6 3.4578 -3.4389 -0.0878 12 6 4.2067 -4.5941 -0.1998 13 6 3.5788 -5.8195 -0.3187 14 6 2.1915 -5.8923 -0.3306 15 7 1.5563 -7.1335 -0.4505 16 6 0.3974 -7.3628 0.1982 17 8 -0.1385 -6.4665 0.8209 18 7 -0.1676 -8.5857 0.1566 19 6 0.1542 -9.8794 -0.4688 20 6 -0.6474 -10.5467 0.6474 21 6 -1.3803 -9.2106 0.7109 22 6 -1.4945 -11.7539 0.2270 23 6 -0.7574 -12.9645 0.8572 24 6 -0.2665 -12.4018 2.2152 25 6 0.1368 -10.9440 1.8991 26 6 1.4364 -4.7332 -0.2236 27 1 -0.4849 0.8401 0.0004 28 1 3.9515 -2.4834 0.0097 29 1 5.2853 -4.5401 -0.1901 30 1 4.1670 -6.7213 -0.4020 31 1 1.9501 -7.8287 -1.0004 32 1 -0.2876 -10.0065 -1.4571 33 1 1.2169 -10.1206 -0.4467 34 1 -1.6100 -8.8884 1.7265 35 1 -2.2417 -9.1539 0.0453 36 1 -2.5048 -11.6704 0.6279 37 1 -1.5193 -11.8443 -0.8590 38 1 0.0865 -13.2676 0.2375 39 1 -1.4439 -13.7973 1.0102 40 1 0.5944 -12.9666 2.5731 41 1 -1.0708 -12.4241 2.9504 42 1 1.2078 -10.8850 1.7048 43 1 -0.1292 -10.2917 2.7308 44 1 0.3578 -4.7872 -0.2330 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000779405058.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:56 Heat of formation + Delta-G solvation = -14.106352 kcal Electronic energy + Delta-G solvation = -25642.869793 eV Core-core repulsion = 21947.223943 eV Total energy + Delta-G solvation = -3695.645850 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18991 -41.05888 -40.03892 -38.18640 -36.57014 -35.53140 -34.26647 -31.56109 -30.76120 -29.69053 -29.30889 -27.35465 -27.14988 -25.79172 -23.74872 -23.01408 -21.63754 -21.27176 -20.01608 -19.44058 -19.28395 -18.69590 -17.50794 -17.09005 -16.76024 -16.57199 -16.29068 -16.06786 -15.86119 -15.50814 -15.46290 -15.11274 -14.72882 -14.37004 -14.27024 -14.23479 -13.60726 -13.57394 -13.22175 -12.95665 -12.71626 -12.59696 -12.49923 -12.37057 -12.08860 -12.00594 -11.90459 -11.79088 -11.46248 -11.35247 -11.34511 -11.18847 -10.90965 -10.78067 -9.86839 -9.30582 -8.86198 -8.47132 -6.16930 0.44247 0.69789 1.28862 1.34274 1.43960 1.54310 1.98893 2.17463 2.73568 2.83107 3.15845 3.16876 3.50882 3.59570 3.75681 4.04160 4.14141 4.26533 4.34863 4.39534 4.41292 4.42229 4.52458 4.52927 4.59553 4.68190 4.71681 4.77065 4.78463 4.88718 5.02824 5.03856 5.08044 5.11337 5.15406 5.29182 5.32616 5.41599 5.44240 5.46728 5.55363 5.62857 5.73470 6.03124 6.13599 6.21088 6.86664 6.96377 7.42511 7.79928 8.77341 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.002477 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.197616 B =11300.251546 C =11920.877007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.030 4.030 3 Si 1.026 2.974 4 H -0.245 1.245 5 H -0.267 1.267 6 H -0.270 1.270 7 C -0.413 4.413 8 H 0.108 0.892 9 O -0.237 6.237 10 C 0.127 3.873 11 C -0.254 4.254 12 C -0.046 4.046 13 C -0.204 4.204 14 C 0.200 3.800 15 N -0.662 5.662 16 C 0.719 3.281 17 O -0.624 6.624 18 N -0.667 5.667 19 C 0.111 3.889 20 C -0.082 4.082 21 C 0.123 3.877 22 C -0.103 4.103 23 C -0.119 4.119 24 C -0.123 4.123 25 C -0.101 4.101 26 C -0.215 4.215 27 H 0.272 0.728 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.424 0.576 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.048 0.952 44 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.351 -29.480 -2.022 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.227 4.227 3 Si 0.845 3.155 4 H -0.168 1.168 5 H -0.192 1.192 6 H -0.195 1.195 7 C -0.489 4.489 8 H 0.126 0.874 9 O -0.144 6.144 10 C 0.076 3.924 11 C -0.274 4.274 12 C -0.064 4.064 13 C -0.225 4.225 14 C 0.105 3.895 15 N -0.311 5.311 16 C 0.423 3.577 17 O -0.504 6.504 18 N -0.406 5.406 19 C -0.010 4.010 20 C -0.083 4.083 21 C 0.000 4.000 22 C -0.141 4.141 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.139 4.139 26 C -0.237 4.237 27 H 0.081 0.919 28 H 0.143 0.857 29 H 0.181 0.819 30 H 0.181 0.819 31 H 0.263 0.737 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.626 -28.526 -1.534 28.797 hybrid contribution -0.275 1.174 0.007 1.206 sum 3.350 -27.352 -1.527 27.599 Atomic orbital electron populations 1.70250 1.08373 1.28725 1.49157 1.26773 0.96900 1.03146 0.95842 0.84433 0.78373 0.74220 0.78488 1.16840 1.19245 1.19482 1.21988 0.92762 0.81205 1.52933 0.87448 1.83968 1.36320 1.12770 1.81316 1.19669 0.91811 0.87243 0.93692 1.21329 0.92280 1.00914 1.12906 1.21040 1.00631 0.90223 0.94528 1.20856 0.90641 0.99551 1.11427 1.17126 0.91566 0.82637 0.98186 1.42140 1.23571 1.14395 1.51005 1.15579 0.80905 0.81385 0.79833 1.90996 1.65304 1.44190 1.49921 1.48854 1.27846 1.07945 1.55922 1.23461 1.02411 0.77408 0.97731 1.22122 0.96629 0.93296 0.96228 1.23167 0.88428 0.89058 0.99310 1.22182 0.98377 0.91672 1.01833 1.22525 1.00297 0.97208 0.95598 1.22421 1.01168 0.94182 0.98239 1.21821 0.99615 0.97216 0.95209 1.20180 0.99460 0.90359 1.13689 0.91906 0.85686 0.81905 0.81863 0.73718 0.87329 0.88605 0.92305 0.88545 0.90439 0.89324 0.90491 0.90502 0.90980 0.91726 0.91237 0.93297 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.80 13.67 21.61 0.30 -60.51 16 2 C -0.03 -1.81 5.49 84.83 0.47 -1.35 16 3 Si 1.03 44.89 29.55 68.60 2.03 46.92 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.41 -25.56 9.49 67.92 0.64 -24.91 16 8 H 0.11 5.98 5.20 -2.91 -0.02 5.97 16 9 O -0.24 -15.75 9.75 -22.78 -0.22 -15.97 16 10 C 0.13 7.06 6.64 22.56 0.15 7.21 16 11 C -0.25 -11.60 9.16 22.41 0.21 -11.40 16 12 C -0.05 -1.56 10.03 22.23 0.22 -1.33 16 13 C -0.20 -6.42 9.96 22.43 0.22 -6.20 16 14 C 0.20 7.81 6.30 38.13 0.24 8.05 16 15 N -0.66 -20.55 5.34 -317.23 -1.69 -22.24 16 16 C 0.72 25.96 8.63 179.06 1.55 27.51 16 17 O -0.62 -30.95 14.55 -3.99 -0.06 -31.01 16 18 N -0.67 -16.48 3.67 -875.87 -3.21 -19.70 16 19 C 0.11 1.40 7.53 83.54 0.63 2.03 16 20 C -0.08 -1.01 1.24 -52.31 -0.07 -1.07 16 21 C 0.12 2.47 7.88 83.46 0.66 3.12 16 22 C -0.10 -0.74 6.24 31.44 0.20 -0.54 16 23 C -0.12 -0.74 6.91 31.99 0.22 -0.52 16 24 C -0.12 -1.14 6.85 31.79 0.22 -0.92 16 25 C -0.10 -1.36 6.33 31.10 0.20 -1.16 16 26 C -0.21 -11.15 8.64 22.51 0.19 -10.95 16 27 H 0.27 16.23 8.31 -92.70 -0.77 15.46 16 28 H 0.13 5.66 5.63 -2.91 -0.02 5.64 16 29 H 0.16 3.96 8.06 -2.91 -0.02 3.93 16 30 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 31 H 0.42 8.75 8.54 -92.71 -0.79 7.96 16 32 H 0.11 0.93 7.96 -2.39 -0.02 0.92 16 33 H 0.10 0.88 7.93 -2.39 -0.02 0.86 16 34 H 0.06 1.41 7.91 -2.39 -0.02 1.39 16 35 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.08 0.57 8.13 -2.38 -0.02 0.55 16 37 H 0.09 0.40 7.83 -2.39 -0.02 0.38 16 38 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 39 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 40 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.93 7.82 -2.39 -0.02 0.91 16 43 H 0.05 0.87 7.80 -2.39 -0.02 0.86 16 44 H 0.10 5.64 6.23 -2.91 -0.02 5.62 16 Total: -1.00 -90.92 361.31 3.32 -87.61 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.23 Total: 27.33 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: 5.95 Total: -12.43 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -4.61 Total: -102.44 kcal Atomic # 8 Polarization: -46.70 SS G_CDS: -0.28 Total: -46.98 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -90.92 3.32 -87.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000779405058.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.500 kcal (2) G-P(sol) polarization free energy of solvation -90.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds