Wall clock time and date at job start Tue Mar 31 2020 10:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38867 * 119.97984 * 359.72209 * 12 11 10 14 14 C 1.38259 * 120.26408 * 179.72840 * 13 12 11 15 15 C 1.37992 * 120.20984 * 0.54765 * 14 13 12 16 16 C 1.39683 * 119.95540 * 359.72738 * 15 14 13 17 17 C 1.47488 * 120.12757 * 180.02562 * 16 15 14 18 18 N 1.29751 * 120.00157 * 359.97438 * 17 16 15 19 19 N 1.40099 * 119.99917 * 180.02562 * 18 17 16 20 20 C 1.34784 * 120.00176 * 180.02562 * 19 18 17 21 21 O 1.21304 * 119.99662 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00122 * 179.97438 * 20 19 18 23 23 C 1.53005 * 109.46928 * 179.97438 * 22 20 19 24 24 C 1.53005 * 117.49666 * 243.61925 * 23 22 20 25 25 C 1.53002 * 117.49662 * 174.99922 * 23 22 20 26 26 C 1.38426 * 119.97719 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08000 * 119.87307 * 359.97438 * 13 12 11 33 33 H 1.07994 * 119.89663 * 180.27467 * 14 13 12 34 34 H 1.08003 * 120.01551 * 179.74882 * 15 14 13 35 35 H 1.07999 * 120.00155 * 179.97438 * 17 16 15 36 36 H 0.96998 * 120.00279 * 359.97438 * 19 18 17 37 37 H 1.09004 * 109.47186 * 299.99676 * 22 20 19 38 38 H 1.09003 * 109.47036 * 59.99519 * 22 20 19 39 39 H 1.09000 * 115.55052 * 29.32880 * 23 22 20 40 40 H 1.08995 * 117.49739 * 359.97438 * 24 23 22 41 41 H 1.08992 * 117.49177 * 145.02209 * 24 23 22 42 42 H 1.09001 * 117.49873 * 214.98183 * 25 23 22 43 43 H 1.09006 * 117.50008 * 359.97438 * 25 23 22 44 44 H 1.08004 * 120.10906 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6575 -5.9663 -0.0044 14 6 4.4163 -7.1221 0.0017 15 6 3.8004 -8.3570 0.0012 16 6 2.4061 -8.4410 0.0003 17 6 1.7440 -9.7589 0.0004 18 7 2.4567 -10.8431 0.0008 19 7 1.8277 -12.0949 0.0003 20 6 2.5680 -13.2212 0.0012 21 8 3.7790 -13.1510 0.0020 22 6 1.8914 -14.5677 0.0013 23 6 2.9513 -15.6711 0.0018 24 6 3.0062 -16.5986 -1.2139 25 6 2.4657 -17.1172 0.1202 26 6 1.6418 -7.2726 0.0004 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1454 -5.0028 -0.0090 33 1 5.4943 -7.0583 0.0024 34 1 4.3962 -9.2578 0.0019 35 1 0.6658 -9.8215 0.0001 36 1 0.8593 -12.1512 0.0000 37 1 1.2685 -14.6614 0.8909 38 1 1.2696 -14.6620 -0.8891 39 1 3.8952 -15.4161 0.4837 40 1 2.2869 -16.4229 -2.0137 41 1 3.9863 -16.9537 -1.5320 42 1 3.0902 -17.8136 0.6798 43 1 1.3910 -17.2824 0.1982 44 1 0.5634 -7.3307 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000814988578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:57 Heat of formation + Delta-G solvation = 4.088885 kcal Electronic energy + Delta-G solvation = -23615.031913 eV Core-core repulsion = 19920.175068 eV Total energy + Delta-G solvation = -3694.856845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.15768 -39.78660 -37.89844 -37.37424 -36.28396 -33.44306 -33.04521 -31.12107 -30.58313 -29.46051 -28.77347 -25.28540 -24.03202 -22.84287 -22.43857 -21.96309 -21.18376 -20.62311 -20.06780 -18.24067 -17.36367 -17.26579 -16.28329 -16.15616 -15.67589 -15.66058 -15.36892 -15.16734 -14.69136 -14.49566 -14.33959 -14.11764 -13.58566 -13.40567 -12.96404 -12.90780 -12.35979 -12.34980 -11.99555 -11.96701 -11.60315 -11.46243 -11.43450 -10.93287 -10.85908 -10.80189 -10.63506 -10.55268 -10.46851 -10.20465 -9.94928 -9.70812 -9.68919 -9.31190 -8.49509 -8.43363 -7.88920 -6.12870 -4.17448 0.65880 1.60528 2.01846 2.07645 2.60160 3.25229 3.31490 3.32577 3.35968 3.72322 3.95594 4.08034 4.13555 4.36054 4.42062 4.42565 4.58951 4.74436 4.85490 4.97008 4.99882 5.08598 5.17284 5.18639 5.23955 5.29502 5.42085 5.44122 5.53855 5.64717 5.79552 5.82373 5.99971 6.00649 6.02895 6.44052 6.48717 6.53903 6.66896 6.74497 6.85677 7.19670 7.47030 7.60897 7.77573 8.00555 8.04511 8.21047 8.88395 9.47239 10.98699 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.054633 B = 0.001537 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.384565 B =18216.405497 C =18628.089359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.315 6.315 12 C 0.140 3.860 13 C -0.192 4.192 14 C -0.086 4.086 15 C -0.126 4.126 16 C -0.028 4.028 17 C 0.124 3.876 18 N -0.234 5.234 19 N -0.588 5.588 20 C 0.531 3.469 21 O -0.501 6.501 22 C -0.104 4.104 23 C -0.144 4.144 24 C -0.177 4.177 25 C -0.178 4.178 26 C -0.131 4.131 27 H 0.263 0.737 28 H 0.028 0.972 29 H 0.028 0.972 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.133 0.867 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.121 0.879 36 H 0.385 0.615 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.657 -30.373 -0.221 30.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.077 0.923 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.228 6.228 12 C 0.093 3.907 13 C -0.212 4.212 14 C -0.104 4.104 15 C -0.147 4.147 16 C -0.030 4.030 17 C -0.087 4.087 18 N -0.038 5.038 19 N -0.331 5.331 20 C 0.318 3.682 21 O -0.372 6.372 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.214 4.214 25 C -0.215 4.215 26 C -0.152 4.152 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.151 0.849 33 H 0.144 0.856 34 H 0.149 0.851 35 H 0.138 0.862 36 H 0.223 0.777 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.138 0.862 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.035 -30.757 -0.222 30.907 hybrid contribution -0.843 1.254 -0.025 1.512 sum 2.191 -29.502 -0.246 29.585 Atomic orbital electron populations 1.69986 1.06108 1.26875 1.49775 1.24985 0.94895 0.99390 0.94872 0.86435 0.80013 0.83250 0.77724 1.19613 1.20837 1.20841 1.21012 0.93114 0.90196 1.52170 0.92279 1.19130 0.94183 0.89011 0.98901 1.23358 0.97132 0.80701 0.99764 1.86177 1.36421 1.13114 1.87081 1.18959 0.90049 0.87481 0.94225 1.21583 0.93195 1.00099 1.06282 1.20901 0.99828 0.91638 0.98059 1.21214 0.93444 0.98100 1.01915 1.17938 0.93041 0.89094 1.02976 1.24435 0.97415 0.90900 0.95944 1.74950 1.25886 0.90441 1.12532 1.47064 1.08692 1.03027 1.74295 1.20586 0.87818 0.84155 0.75612 1.90727 1.13930 1.86764 1.45780 1.21217 0.98472 0.89977 1.04819 1.22050 1.00687 0.89711 1.03818 1.23059 1.02999 1.03789 0.91587 1.23013 1.01489 0.96209 1.00791 1.20383 1.00147 0.88878 1.05818 0.92758 0.95374 0.95360 0.93008 0.93019 0.84889 0.85644 0.85093 0.86156 0.77736 0.87984 0.88338 0.86177 0.88737 0.88561 0.88500 0.88652 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.08 13.29 55.43 0.74 -25.34 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.53 -14.43 9.11 -34.44 -0.31 -14.74 16 8 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 9 C 0.02 0.64 5.34 -27.89 -0.15 0.49 16 10 C 0.06 1.33 4.68 37.16 0.17 1.50 16 11 O -0.31 -6.12 10.13 -19.44 -0.20 -6.32 16 12 C 0.14 2.28 6.68 -39.28 -0.26 2.01 16 13 C -0.19 -2.84 9.03 -39.34 -0.36 -3.20 16 14 C -0.09 -1.12 10.03 -39.66 -0.40 -1.51 16 15 C -0.13 -1.65 9.58 -39.13 -0.37 -2.02 16 16 C -0.03 -0.35 5.87 -105.07 -0.62 -0.97 16 17 C 0.12 1.27 10.75 -14.66 -0.16 1.11 16 18 N -0.23 -2.78 10.15 32.16 0.33 -2.46 16 19 N -0.59 -5.23 6.26 31.22 0.20 -5.03 16 20 C 0.53 5.22 7.95 -10.98 -0.09 5.14 16 21 O -0.50 -7.28 15.90 5.54 0.09 -7.19 16 22 C -0.10 -0.56 5.98 -27.88 -0.17 -0.72 16 23 C -0.14 -0.96 5.42 -90.61 -0.49 -1.45 16 24 C -0.18 -1.01 10.18 -26.73 -0.27 -1.28 16 25 C -0.18 -0.86 10.25 -26.73 -0.27 -1.13 16 26 C -0.13 -1.79 9.73 -39.00 -0.38 -2.17 16 27 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.05 1.01 7.67 -51.93 -0.40 0.62 16 31 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 32 H 0.13 1.92 6.28 -52.49 -0.33 1.59 16 33 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.13 1.69 7.55 -52.48 -0.40 1.30 16 35 H 0.12 0.82 8.02 -52.49 -0.42 0.39 16 36 H 0.38 1.88 8.65 -182.60 -1.58 0.30 16 37 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.10 0.33 7.87 -51.93 -0.41 -0.07 16 39 H 0.12 1.05 7.30 -51.93 -0.38 0.67 16 40 H 0.09 0.46 8.03 -51.93 -0.42 0.04 16 41 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.13 1.58 8.06 -52.48 -0.42 1.16 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -33.85 382.65 -9.98 -43.83 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -7.65 Total: -1.89 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -4.22 Total: -17.35 kcal Atomic # 7 Polarization: -34.09 SS G_CDS: 1.26 Total: -32.83 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.11 Total: -13.51 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.85 -9.98 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814988578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.916 kcal (2) G-P(sol) polarization free energy of solvation -33.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds