Wall clock time and date at job start Tue Mar 31 2020 10:45:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86800 * 120.00005 * 2 1
4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1
5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1
6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1
7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3
8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1
9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1
10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2
11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7
12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9
13 13 C 1.38867 * 119.97984 * 359.72209 * 12 11 10
14 14 C 1.38259 * 120.26408 * 179.72840 * 13 12 11
15 15 C 1.37992 * 120.20984 * 0.54765 * 14 13 12
16 16 C 1.39683 * 119.95540 * 359.72738 * 15 14 13
17 17 C 1.47488 * 120.12757 * 180.02562 * 16 15 14
18 18 N 1.29751 * 120.00157 * 359.97438 * 17 16 15
19 19 N 1.40099 * 119.99917 * 180.02562 * 18 17 16
20 20 C 1.34784 * 120.00176 * 180.02562 * 19 18 17
21 21 O 1.21304 * 119.99662 * 359.97438 * 20 19 18
22 22 C 1.50696 * 120.00122 * 179.97438 * 20 19 18
23 23 C 1.53005 * 109.46928 * 179.97438 * 22 20 19
24 24 C 1.53005 * 117.49666 * 243.61925 * 23 22 20
25 25 C 1.53002 * 117.49662 * 174.99922 * 23 22 20
26 26 C 1.38426 * 119.97719 * 179.97438 * 12 11 10
27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3
28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2
29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2
30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7
31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7
32 32 H 1.08000 * 119.87307 * 359.97438 * 13 12 11
33 33 H 1.07994 * 119.89663 * 180.27467 * 14 13 12
34 34 H 1.08003 * 120.01551 * 179.74882 * 15 14 13
35 35 H 1.07999 * 120.00155 * 179.97438 * 17 16 15
36 36 H 0.96998 * 120.00279 * 359.97438 * 19 18 17
37 37 H 1.09004 * 109.47186 * 299.99676 * 22 20 19
38 38 H 1.09003 * 109.47036 * 59.99519 * 22 20 19
39 39 H 1.09000 * 115.55052 * 29.32880 * 23 22 20
40 40 H 1.08995 * 117.49739 * 359.97438 * 24 23 22
41 41 H 1.08992 * 117.49177 * 145.02209 * 24 23 22
42 42 H 1.09001 * 117.49873 * 214.98183 * 25 23 22
43 43 H 1.09006 * 117.50008 * 359.97438 * 25 23 22
44 44 H 1.08004 * 120.10906 * 359.97438 * 26 12 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7092 1.3463 0.0006
5 1 1.8905 2.3964 -1.2126
6 1 1.8904 2.3964 1.2124
7 6 2.0045 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0001
9 6 1.2510 -2.4992 0.0005
10 6 2.2451 -3.6621 0.0005
11 8 1.5306 -4.8996 -0.0001
12 6 2.2708 -6.0394 0.0004
13 6 3.6575 -5.9663 -0.0044
14 6 4.4163 -7.1221 0.0017
15 6 3.8004 -8.3570 0.0012
16 6 2.4061 -8.4410 0.0003
17 6 1.7440 -9.7589 0.0004
18 7 2.4567 -10.8431 0.0008
19 7 1.8277 -12.0949 0.0003
20 6 2.5680 -13.2212 0.0012
21 8 3.7790 -13.1510 0.0020
22 6 1.8914 -14.5677 0.0013
23 6 2.9513 -15.6711 0.0018
24 6 3.0062 -16.5986 -1.2139
25 6 2.4657 -17.1172 0.1202
26 6 1.6418 -7.2726 0.0004
27 1 -0.4850 0.8401 -0.0004
28 1 0.6246 -2.5571 -0.8897
29 1 0.6240 -2.5566 0.8902
30 1 2.8718 -3.6044 0.8905
31 1 2.8718 -3.6044 -0.8895
32 1 4.1454 -5.0028 -0.0090
33 1 5.4943 -7.0583 0.0024
34 1 4.3962 -9.2578 0.0019
35 1 0.6658 -9.8215 0.0001
36 1 0.8593 -12.1512 0.0000
37 1 1.2685 -14.6614 0.8909
38 1 1.2696 -14.6620 -0.8891
39 1 3.8952 -15.4161 0.4837
40 1 2.2869 -16.4229 -2.0137
41 1 3.9863 -16.9537 -1.5320
42 1 3.0902 -17.8136 0.6798
43 1 1.3910 -17.2824 0.1982
44 1 0.5634 -7.3307 0.0004
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000814988578.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:45:56
Heat of formation + Delta-G solvation = -16.143982 kcal
Electronic energy + Delta-G solvation = -23615.909276 eV
Core-core repulsion = 19920.175068 eV
Total energy + Delta-G solvation = -3695.734208 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-41.08126 -40.82826 -38.89685 -38.08098 -37.20264 -35.44911 -33.94891 -32.60416
-31.70312 -30.61786 -29.63450 -27.06399 -25.18010 -23.53287 -23.26923 -23.16210
-22.27484 -21.48234 -20.97914 -19.32929 -18.48498 -18.16045 -17.91973 -16.94288
-16.91039 -16.78057 -16.62322 -16.34551 -16.08989 -15.52229 -14.98215 -14.82738
-14.50588 -14.41688 -14.34359 -14.26565 -13.98871 -13.40347 -13.14735 -12.94034
-12.63984 -12.61199 -12.49724 -12.43481 -12.32299 -12.05649 -11.61087 -11.56247
-11.37558 -11.35849 -11.30641 -11.07084 -10.84620 -10.64221 -10.60488 -9.44445
-9.06561 -8.25152 -6.38023 -0.30450 0.49549 1.14914 1.38679 1.42880
1.42967 1.56434 1.82149 2.27998 2.51801 2.88388 2.90164 3.09864
3.47081 3.63460 3.71812 3.87629 4.01773 4.05653 4.15019 4.19086
4.25169 4.30250 4.31580 4.44627 4.50943 4.53025 4.61532 4.72374
4.77231 4.81228 4.82118 5.01425 5.05728 5.27781 5.32750 5.33573
5.38680 5.46022 5.50053 5.51185 5.68156 5.81952 6.07768 6.09867
6.46658 6.55508 6.77218 7.32157 7.36882 8.87978
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.054633 B = 0.001537 C = 0.001503
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 512.384565 B =18216.405497 C =18628.089359
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C 0.004 3.996
3 Si 0.973 3.027
4 H -0.258 1.258
5 H -0.278 1.278
6 H -0.278 1.278
7 C -0.545 4.545
8 H 0.070 0.930
9 C 0.028 3.972
10 C 0.083 3.917
11 O -0.335 6.335
12 C 0.107 3.893
13 C -0.201 4.201
14 C -0.083 4.083
15 C -0.129 4.129
16 C -0.025 4.025
17 C 0.130 3.870
18 N -0.272 5.272
19 N -0.577 5.577
20 C 0.526 3.474
21 O -0.558 6.558
22 C -0.091 4.091
23 C -0.164 4.164
24 C -0.185 4.185
25 C -0.161 4.161
26 C -0.127 4.127
27 H 0.266 0.734
28 H 0.000 1.000
29 H 0.000 1.000
30 H 0.061 0.939
31 H 0.061 0.939
32 H 0.133 0.867
33 H 0.149 0.851
34 H 0.132 0.868
35 H 0.159 0.841
36 H 0.408 0.592
37 H 0.131 0.869
38 H 0.127 0.873
39 H 0.089 0.911
40 H 0.107 0.893
41 H 0.087 0.913
42 H 0.097 0.903
43 H 0.116 0.884
44 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.449 -31.798 -0.274 31.832
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.569 5.569
2 C -0.195 4.195
3 Si 0.797 3.203
4 H -0.182 1.182
5 H -0.203 1.203
6 H -0.203 1.203
7 C -0.583 4.583
8 H 0.088 0.912
9 C -0.010 4.010
10 C 0.009 3.991
11 O -0.249 6.249
12 C 0.062 3.938
13 C -0.220 4.220
14 C -0.101 4.101
15 C -0.149 4.149
16 C -0.028 4.028
17 C -0.080 4.080
18 N -0.076 5.076
19 N -0.321 5.321
20 C 0.316 3.684
21 O -0.433 6.433
22 C -0.131 4.131
23 C -0.183 4.183
24 C -0.222 4.222
25 C -0.198 4.198
26 C -0.148 4.148
27 H 0.075 0.925
28 H 0.019 0.981
29 H 0.019 0.981
30 H 0.079 0.921
31 H 0.079 0.921
32 H 0.151 0.849
33 H 0.167 0.833
34 H 0.150 0.850
35 H 0.176 0.824
36 H 0.249 0.751
37 H 0.149 0.851
38 H 0.145 0.855
39 H 0.107 0.893
40 H 0.125 0.875
41 H 0.106 0.894
42 H 0.115 0.885
43 H 0.135 0.865
44 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges 2.802 -32.205 -0.274 32.328
hybrid contribution -0.778 1.508 -0.007 1.697
sum 2.024 -30.697 -0.281 30.765
Atomic orbital electron populations
1.70120 1.07958 1.28074 1.50775 1.25984 0.95775 1.03503 0.94230
0.85280 0.79101 0.78142 0.77806 1.18206 1.20331 1.20341 1.21447
0.93856 0.91122 1.51896 0.91172 1.18967 0.94577 0.91252 0.96175
1.22883 0.95435 0.80177 1.00640 1.86088 1.37083 1.13510 1.88264
1.19270 0.90793 0.87040 0.96738 1.21658 0.92813 1.00822 1.06752
1.21135 1.01001 0.90918 0.97074 1.21392 0.94013 0.98143 1.01360
1.18130 0.92902 0.90015 1.01711 1.24486 0.98992 0.89417 0.95146
1.74854 1.28040 0.91804 1.12910 1.46955 1.09891 1.01820 1.73469
1.21525 0.87374 0.85543 0.73985 1.90706 1.16519 1.87588 1.48512
1.21280 0.98030 0.86359 1.07455 1.22001 1.00290 0.91278 1.04723
1.23154 1.03159 1.03712 0.92195 1.23097 1.02656 0.94467 0.99535
1.20560 1.01189 0.88147 1.04879 0.92502 0.98140 0.98127 0.92072
0.92080 0.84892 0.83293 0.85022 0.82395 0.75125 0.85097 0.85500
0.89268 0.87458 0.89436 0.88468 0.86538 0.83035
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16
2 C 0.00 0.21 5.46 84.65 0.46 0.67 16
3 Si 0.97 42.99 29.54 68.60 2.03 45.01 16
4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16
5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16
6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16
7 C -0.55 -30.23 9.11 25.60 0.23 -29.99 16
8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16
9 C 0.03 1.46 5.34 29.85 0.16 1.62 16
10 C 0.08 3.48 4.68 71.98 0.34 3.82 16
11 O -0.34 -13.28 10.13 -92.46 -0.94 -14.22 16
12 C 0.11 3.47 6.68 22.47 0.15 3.62 16
13 C -0.20 -5.85 9.03 22.43 0.20 -5.65 16
14 C -0.08 -2.07 10.03 22.22 0.22 -1.84 16
15 C -0.13 -3.21 9.58 22.56 0.22 -3.00 16
16 C -0.03 -0.59 5.87 -20.16 -0.12 -0.71 16
17 C 0.13 2.37 10.75 87.44 0.94 3.31 16
18 N -0.27 -6.03 10.15 -52.16 -0.53 -6.56 16
19 N -0.58 -9.04 6.26 -173.51 -1.09 -10.12 16
20 C 0.53 9.72 7.95 87.65 0.70 10.42 16
21 O -0.56 -16.54 15.90 -3.10 -0.05 -16.59 16
22 C -0.09 -0.75 5.98 29.85 0.18 -0.57 16
23 C -0.16 -2.02 5.42 -10.79 -0.06 -2.08 16
24 C -0.19 -1.88 10.18 30.60 0.31 -1.57 16
25 C -0.16 -1.21 10.25 30.60 0.31 -0.90 16
26 C -0.13 -3.32 9.73 22.65 0.22 -3.10 16
27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16
28 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16
29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16
30 H 0.06 2.41 7.67 -2.39 -0.02 2.39 16
31 H 0.06 2.41 7.65 -2.39 -0.02 2.39 16
32 H 0.13 3.79 6.28 -2.91 -0.02 3.77 16
33 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16
34 H 0.13 3.31 7.55 -2.91 -0.02 3.28 16
35 H 0.16 1.56 8.02 -2.91 -0.02 1.54 16
36 H 0.41 2.65 8.65 -213.32 -1.85 0.80 16
37 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16
38 H 0.13 0.36 7.87 -2.39 -0.02 0.35 16
39 H 0.09 1.67 7.30 -2.39 -0.02 1.65 16
40 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16
41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16
42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16
43 H 0.12 0.40 8.14 -2.38 -0.02 0.39 16
44 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16
Total: -1.00 -76.58 382.65 3.34 -73.24
By element:
Atomic # 1 Polarization: 11.44 SS G_CDS: -0.84 Total: 10.60 kcal
Atomic # 6 Polarization: -30.43 SS G_CDS: 4.47 Total: -25.96 kcal
Atomic # 7 Polarization: -70.76 SS G_CDS: -1.33 Total: -72.09 kcal
Atomic # 8 Polarization: -29.82 SS G_CDS: -0.99 Total: -30.80 kcal
Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal
Total: -76.58 3.34 -73.24 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000814988578.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 57.097 kcal
(2) G-P(sol) polarization free energy of solvation -76.579 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.482 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal
(6) G-S(sol) free energy of system = (1) + (5) -16.144 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.72 seconds