Wall clock time and date at job start Tue Mar 31 2020 10:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 120.00005 * 2 1 4 4 H 1.48499 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47104 * 299.99522 * 3 2 1 6 6 H 1.48489 * 109.47200 * 59.99802 * 3 2 1 7 7 C 1.37876 * 119.99563 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00428 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47466 * 179.97438 * 9 7 2 11 11 O 1.42898 * 109.47319 * 180.02562 * 10 9 7 12 12 C 1.35903 * 116.99959 * 180.02562 * 11 10 9 13 13 C 1.38867 * 119.97984 * 359.72209 * 12 11 10 14 14 C 1.38259 * 120.26408 * 179.72840 * 13 12 11 15 15 C 1.37992 * 120.20984 * 0.54765 * 14 13 12 16 16 C 1.39683 * 119.95540 * 359.72738 * 15 14 13 17 17 C 1.47488 * 120.12757 * 180.02562 * 16 15 14 18 18 N 1.29751 * 120.00157 * 359.97438 * 17 16 15 19 19 N 1.40099 * 119.99917 * 180.02562 * 18 17 16 20 20 C 1.34784 * 120.00176 * 180.02562 * 19 18 17 21 21 O 1.21304 * 119.99662 * 359.97438 * 20 19 18 22 22 C 1.50696 * 120.00122 * 179.97438 * 20 19 18 23 23 C 1.53005 * 109.46928 * 179.97438 * 22 20 19 24 24 C 1.53005 * 117.49666 * 243.61925 * 23 22 20 25 25 C 1.53002 * 117.49662 * 174.99922 * 23 22 20 26 26 C 1.38426 * 119.97719 * 179.97438 * 12 11 10 27 27 H 0.97002 * 119.99731 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47120 * 59.99671 * 9 7 2 29 29 H 1.08998 * 109.46862 * 300.00473 * 9 7 2 30 30 H 1.09002 * 109.47153 * 59.99773 * 10 9 7 31 31 H 1.09001 * 109.46832 * 299.99964 * 10 9 7 32 32 H 1.08000 * 119.87307 * 359.97438 * 13 12 11 33 33 H 1.07994 * 119.89663 * 180.27467 * 14 13 12 34 34 H 1.08003 * 120.01551 * 179.74882 * 15 14 13 35 35 H 1.07999 * 120.00155 * 179.97438 * 17 16 15 36 36 H 0.96998 * 120.00279 * 359.97438 * 19 18 17 37 37 H 1.09004 * 109.47186 * 299.99676 * 22 20 19 38 38 H 1.09003 * 109.47036 * 59.99519 * 22 20 19 39 39 H 1.09000 * 115.55052 * 29.32880 * 23 22 20 40 40 H 1.08995 * 117.49739 * 359.97438 * 24 23 22 41 41 H 1.08992 * 117.49177 * 145.02209 * 24 23 22 42 42 H 1.09001 * 117.49873 * 214.98183 * 25 23 22 43 43 H 1.09006 * 117.50008 * 359.97438 * 25 23 22 44 44 H 1.08004 * 120.10906 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 8 1.5306 -4.8996 -0.0001 12 6 2.2708 -6.0394 0.0004 13 6 3.6575 -5.9663 -0.0044 14 6 4.4163 -7.1221 0.0017 15 6 3.8004 -8.3570 0.0012 16 6 2.4061 -8.4410 0.0003 17 6 1.7440 -9.7589 0.0004 18 7 2.4567 -10.8431 0.0008 19 7 1.8277 -12.0949 0.0003 20 6 2.5680 -13.2212 0.0012 21 8 3.7790 -13.1510 0.0020 22 6 1.8914 -14.5677 0.0013 23 6 2.9513 -15.6711 0.0018 24 6 3.0062 -16.5986 -1.2139 25 6 2.4657 -17.1172 0.1202 26 6 1.6418 -7.2726 0.0004 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8897 29 1 0.6240 -2.5566 0.8902 30 1 2.8718 -3.6044 0.8905 31 1 2.8718 -3.6044 -0.8895 32 1 4.1454 -5.0028 -0.0090 33 1 5.4943 -7.0583 0.0024 34 1 4.3962 -9.2578 0.0019 35 1 0.6658 -9.8215 0.0001 36 1 0.8593 -12.1512 0.0000 37 1 1.2685 -14.6614 0.8909 38 1 1.2696 -14.6620 -0.8891 39 1 3.8952 -15.4161 0.4837 40 1 2.2869 -16.4229 -2.0137 41 1 3.9863 -16.9537 -1.5320 42 1 3.0902 -17.8136 0.6798 43 1 1.3910 -17.2824 0.1982 44 1 0.5634 -7.3307 0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000814988578.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:56 Heat of formation + Delta-G solvation = -16.143982 kcal Electronic energy + Delta-G solvation = -23615.909276 eV Core-core repulsion = 19920.175068 eV Total energy + Delta-G solvation = -3695.734208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08126 -40.82826 -38.89685 -38.08098 -37.20264 -35.44911 -33.94891 -32.60416 -31.70312 -30.61786 -29.63450 -27.06399 -25.18010 -23.53287 -23.26923 -23.16210 -22.27484 -21.48234 -20.97914 -19.32929 -18.48498 -18.16045 -17.91973 -16.94288 -16.91039 -16.78057 -16.62322 -16.34551 -16.08989 -15.52229 -14.98215 -14.82738 -14.50588 -14.41688 -14.34359 -14.26565 -13.98871 -13.40347 -13.14735 -12.94034 -12.63984 -12.61199 -12.49724 -12.43481 -12.32299 -12.05649 -11.61087 -11.56247 -11.37558 -11.35849 -11.30641 -11.07084 -10.84620 -10.64221 -10.60488 -9.44445 -9.06561 -8.25152 -6.38023 -0.30450 0.49549 1.14914 1.38679 1.42880 1.42967 1.56434 1.82149 2.27998 2.51801 2.88388 2.90164 3.09864 3.47081 3.63460 3.71812 3.87629 4.01773 4.05653 4.15019 4.19086 4.25169 4.30250 4.31580 4.44627 4.50943 4.53025 4.61532 4.72374 4.77231 4.81228 4.82118 5.01425 5.05728 5.27781 5.32750 5.33573 5.38680 5.46022 5.50053 5.51185 5.68156 5.81952 6.07768 6.09867 6.46658 6.55508 6.77218 7.32157 7.36882 8.87978 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.054633 B = 0.001537 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.384565 B =18216.405497 C =18628.089359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.973 3.027 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.335 6.335 12 C 0.107 3.893 13 C -0.201 4.201 14 C -0.083 4.083 15 C -0.129 4.129 16 C -0.025 4.025 17 C 0.130 3.870 18 N -0.272 5.272 19 N -0.577 5.577 20 C 0.526 3.474 21 O -0.558 6.558 22 C -0.091 4.091 23 C -0.164 4.164 24 C -0.185 4.185 25 C -0.161 4.161 26 C -0.127 4.127 27 H 0.266 0.734 28 H 0.000 1.000 29 H 0.000 1.000 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.133 0.867 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.159 0.841 36 H 0.408 0.592 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.116 0.884 44 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -31.798 -0.274 31.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.797 3.203 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.010 4.010 10 C 0.009 3.991 11 O -0.249 6.249 12 C 0.062 3.938 13 C -0.220 4.220 14 C -0.101 4.101 15 C -0.149 4.149 16 C -0.028 4.028 17 C -0.080 4.080 18 N -0.076 5.076 19 N -0.321 5.321 20 C 0.316 3.684 21 O -0.433 6.433 22 C -0.131 4.131 23 C -0.183 4.183 24 C -0.222 4.222 25 C -0.198 4.198 26 C -0.148 4.148 27 H 0.075 0.925 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.151 0.849 33 H 0.167 0.833 34 H 0.150 0.850 35 H 0.176 0.824 36 H 0.249 0.751 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.107 0.893 40 H 0.125 0.875 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.802 -32.205 -0.274 32.328 hybrid contribution -0.778 1.508 -0.007 1.697 sum 2.024 -30.697 -0.281 30.765 Atomic orbital electron populations 1.70120 1.07958 1.28074 1.50775 1.25984 0.95775 1.03503 0.94230 0.85280 0.79101 0.78142 0.77806 1.18206 1.20331 1.20341 1.21447 0.93856 0.91122 1.51896 0.91172 1.18967 0.94577 0.91252 0.96175 1.22883 0.95435 0.80177 1.00640 1.86088 1.37083 1.13510 1.88264 1.19270 0.90793 0.87040 0.96738 1.21658 0.92813 1.00822 1.06752 1.21135 1.01001 0.90918 0.97074 1.21392 0.94013 0.98143 1.01360 1.18130 0.92902 0.90015 1.01711 1.24486 0.98992 0.89417 0.95146 1.74854 1.28040 0.91804 1.12910 1.46955 1.09891 1.01820 1.73469 1.21525 0.87374 0.85543 0.73985 1.90706 1.16519 1.87588 1.48512 1.21280 0.98030 0.86359 1.07455 1.22001 1.00290 0.91278 1.04723 1.23154 1.03159 1.03712 0.92195 1.23097 1.02656 0.94467 0.99535 1.20560 1.01189 0.88147 1.04879 0.92502 0.98140 0.98127 0.92072 0.92080 0.84892 0.83293 0.85022 0.82395 0.75125 0.85097 0.85500 0.89268 0.87458 0.89436 0.88468 0.86538 0.83035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.28 16 6 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 7 C -0.55 -30.23 9.11 25.60 0.23 -29.99 16 8 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 9 C 0.03 1.46 5.34 29.85 0.16 1.62 16 10 C 0.08 3.48 4.68 71.98 0.34 3.82 16 11 O -0.34 -13.28 10.13 -92.46 -0.94 -14.22 16 12 C 0.11 3.47 6.68 22.47 0.15 3.62 16 13 C -0.20 -5.85 9.03 22.43 0.20 -5.65 16 14 C -0.08 -2.07 10.03 22.22 0.22 -1.84 16 15 C -0.13 -3.21 9.58 22.56 0.22 -3.00 16 16 C -0.03 -0.59 5.87 -20.16 -0.12 -0.71 16 17 C 0.13 2.37 10.75 87.44 0.94 3.31 16 18 N -0.27 -6.03 10.15 -52.16 -0.53 -6.56 16 19 N -0.58 -9.04 6.26 -173.51 -1.09 -10.12 16 20 C 0.53 9.72 7.95 87.65 0.70 10.42 16 21 O -0.56 -16.54 15.90 -3.10 -0.05 -16.59 16 22 C -0.09 -0.75 5.98 29.85 0.18 -0.57 16 23 C -0.16 -2.02 5.42 -10.79 -0.06 -2.08 16 24 C -0.19 -1.88 10.18 30.60 0.31 -1.57 16 25 C -0.16 -1.21 10.25 30.60 0.31 -0.90 16 26 C -0.13 -3.32 9.73 22.65 0.22 -3.10 16 27 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 28 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 30 H 0.06 2.41 7.67 -2.39 -0.02 2.39 16 31 H 0.06 2.41 7.65 -2.39 -0.02 2.39 16 32 H 0.13 3.79 6.28 -2.91 -0.02 3.77 16 33 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 34 H 0.13 3.31 7.55 -2.91 -0.02 3.28 16 35 H 0.16 1.56 8.02 -2.91 -0.02 1.54 16 36 H 0.41 2.65 8.65 -213.32 -1.85 0.80 16 37 H 0.13 0.35 8.14 -2.38 -0.02 0.33 16 38 H 0.13 0.36 7.87 -2.39 -0.02 0.35 16 39 H 0.09 1.67 7.30 -2.39 -0.02 1.65 16 40 H 0.11 0.79 8.03 -2.39 -0.02 0.77 16 41 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.12 0.40 8.14 -2.38 -0.02 0.39 16 44 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -76.58 382.65 3.34 -73.24 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -0.84 Total: 10.60 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.47 Total: -25.96 kcal Atomic # 7 Polarization: -70.76 SS G_CDS: -1.33 Total: -72.09 kcal Atomic # 8 Polarization: -29.82 SS G_CDS: -0.99 Total: -30.80 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -76.58 3.34 -73.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000814988578.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.097 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds