Wall clock time and date at job start Tue Mar 31 2020 11:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00301 * 2 1 4 4 H 1.48504 * 109.46986 * 270.00383 * 3 2 1 5 5 H 1.48503 * 109.46994 * 30.00177 * 3 2 1 6 6 H 1.48498 * 109.47352 * 150.00487 * 3 2 1 7 7 C 1.37875 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00533 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99877 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49810 * 60.06516 * 9 7 2 11 11 C 1.53048 * 109.52374 * 180.14586 * 9 7 2 12 12 C 1.53040 * 109.53631 * 181.32969 * 11 9 7 13 13 C 1.53621 * 109.24063 * 298.51181 * 12 11 9 14 14 N 1.46923 * 108.54807 * 54.85612 * 13 12 11 15 15 C 1.34777 * 120.63254 * 126.36175 * 14 13 12 16 16 O 1.21592 * 120.00281 * 185.53069 * 15 14 13 17 17 C 1.47526 * 119.99846 * 5.53993 * 15 14 13 18 18 C 1.39990 * 120.60029 * 53.79431 * 17 15 14 19 19 C 1.38336 * 118.35246 * 180.23109 * 18 17 15 20 20 C 1.38358 * 119.45512 * 359.47417 * 19 18 17 21 21 C 1.50703 * 119.40521 * 180.25208 * 20 19 18 22 22 C 1.52993 * 117.50045 * 344.02801 * 21 20 19 23 23 C 1.52998 * 117.50063 * 275.36722 * 21 20 19 24 24 N 1.31882 * 121.18405 * 0.53949 * 20 19 18 25 25 C 1.32226 * 121.80241 * 359.74024 * 24 20 19 26 26 O 1.35427 * 119.80133 * 179.97438 * 25 24 20 27 27 C 1.46924 * 118.73705 * 306.09556 * 14 13 12 28 28 H 0.97001 * 119.99496 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.45547 * 301.35140 * 11 9 7 30 30 H 1.09004 * 109.45826 * 61.31048 * 11 9 7 31 31 H 1.09003 * 109.49852 * 58.58511 * 12 11 9 32 32 H 1.08994 * 109.49573 * 178.65141 * 12 11 9 33 33 H 1.09006 * 109.74181 * 295.11766 * 13 12 11 34 34 H 1.09004 * 109.66491 * 174.55451 * 13 12 11 35 35 H 1.07996 * 120.82228 * 359.95226 * 18 17 15 36 36 H 1.08001 * 120.27136 * 179.74552 * 19 18 17 37 37 H 1.09006 * 115.54302 * 129.69779 * 21 20 19 38 38 H 1.08998 * 117.49818 * 0.02562 * 22 21 20 39 39 H 1.09003 * 117.49683 * 145.01787 * 22 21 20 40 40 H 1.09004 * 117.49421 * 214.98089 * 23 21 20 41 41 H 1.08999 * 117.49974 * 359.97438 * 23 21 20 42 42 H 0.96701 * 114.00314 * 269.97243 * 26 25 24 43 43 H 1.09000 * 109.58444 * 173.64344 * 27 14 13 44 44 H 1.08998 * 109.58683 * 293.92638 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5576 -0.8907 11 6 2.2444 -3.6634 0.0025 12 6 1.4798 -4.9886 -0.0310 13 6 0.6025 -5.0988 1.2253 14 7 -0.2561 -3.9091 1.3015 15 6 -1.5928 -4.0334 1.4213 16 8 -2.3012 -3.0459 1.3823 17 6 -2.1964 -5.3676 1.6001 18 6 -1.7633 -6.2138 2.6277 19 6 -2.3581 -7.4567 2.7499 20 6 -3.3614 -7.8204 1.8692 21 6 -4.0125 -9.1724 2.0068 22 6 -3.2945 -10.2187 2.8615 23 6 -3.3201 -10.3615 1.3377 24 7 -3.7541 -7.0072 0.9080 25 6 -3.2152 -5.8110 0.7437 26 8 -3.6493 -5.0090 -0.2575 27 6 0.3706 -2.5812 1.2505 28 1 -0.4849 0.8401 0.0004 29 1 2.8884 -3.5933 -0.8741 30 1 2.8538 -3.6184 0.9052 31 1 0.8513 -5.0237 -0.9209 32 1 2.1881 -5.8168 -0.0530 33 1 1.2342 -5.1509 2.1121 34 1 -0.0172 -5.9933 1.1626 35 1 -0.9810 -5.9057 3.3055 36 1 -2.0450 -8.1360 3.5290 37 1 -5.1024 -9.1696 2.0248 38 1 -2.3514 -9.9289 3.3247 39 1 -3.9120 -10.9044 3.4417 40 1 -3.9545 -11.1411 0.9160 41 1 -2.3938 -10.1657 0.7977 42 1 -3.1692 -5.1230 -1.0891 43 1 -0.4023 -1.8139 1.2043 44 1 0.9817 -2.4311 2.1405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824745464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:21 Heat of formation + Delta-G solvation = -12.608895 kcal Electronic energy + Delta-G solvation = -26725.975193 eV Core-core repulsion = 23030.394278 eV Total energy + Delta-G solvation = -3695.580915 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96878 -39.17278 -37.91369 -36.58904 -36.35847 -33.61072 -32.62618 -31.69639 -30.34521 -29.66503 -25.94688 -25.10307 -24.08498 -23.65380 -22.47807 -21.86072 -21.41944 -20.11722 -18.80866 -18.27950 -17.18679 -17.04477 -16.43749 -16.14615 -15.53951 -15.10492 -15.04764 -14.57926 -14.21676 -13.85565 -13.72623 -13.63286 -13.12383 -13.04360 -12.67715 -12.55848 -12.26649 -12.13899 -11.90405 -11.81372 -11.68029 -11.09112 -11.00072 -10.88365 -10.77593 -10.54420 -10.48764 -10.27140 -9.97696 -9.87032 -9.74104 -9.32931 -9.16685 -8.93633 -8.75563 -8.45384 -7.80195 -6.01089 -4.10623 0.66527 1.01818 3.02711 3.23198 3.29575 3.36107 3.37638 3.39309 3.66840 3.79651 4.18476 4.41315 4.48703 4.55131 4.67574 4.78229 4.84413 4.91842 5.22201 5.27085 5.28515 5.30771 5.38949 5.43048 5.47533 5.59687 5.67096 5.74283 5.86866 5.90551 5.93614 6.10174 6.24658 6.28196 6.54503 6.61119 6.79590 6.92627 7.08859 7.22128 7.49827 7.60923 7.79259 7.83370 7.96312 8.17467 8.35729 8.77623 8.93666 9.55375 11.03942 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.003278 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.317568 B = 8539.088456 C = 9059.171779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.058 0.942 9 C 0.041 3.959 10 H 0.029 0.971 11 C -0.111 4.111 12 C -0.133 4.133 13 C 0.106 3.894 14 N -0.600 5.600 15 C 0.551 3.449 16 O -0.510 6.510 17 C -0.184 4.184 18 C -0.030 4.030 19 C -0.187 4.187 20 C 0.191 3.809 21 C -0.110 4.110 22 C -0.172 4.172 23 C -0.160 4.160 24 N -0.499 5.499 25 C 0.359 3.641 26 O -0.464 6.464 27 C 0.112 3.888 28 H 0.264 0.736 29 H 0.052 0.948 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.145 0.855 36 H 0.144 0.856 37 H 0.124 0.876 38 H 0.101 0.899 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.403 0.597 43 H 0.124 0.876 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.717 -21.173 5.022 21.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.076 0.924 9 C 0.022 3.978 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.171 4.171 13 C -0.017 4.017 14 N -0.333 5.333 15 C 0.336 3.664 16 O -0.386 6.386 17 C -0.191 4.191 18 C -0.056 4.056 19 C -0.207 4.207 20 C 0.053 3.947 21 C -0.129 4.129 22 C -0.209 4.209 23 C -0.198 4.198 24 N -0.218 5.218 25 C 0.179 3.821 26 O -0.271 6.271 27 C -0.007 4.007 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.162 0.838 36 H 0.161 0.839 37 H 0.141 0.859 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.115 0.885 42 H 0.261 0.739 43 H 0.142 0.858 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.300 -20.451 4.798 21.441 hybrid contribution 1.394 1.056 0.153 1.755 sum -2.906 -19.395 4.950 20.227 Atomic orbital electron populations 1.69884 1.05703 1.26922 1.49069 1.25061 0.94883 0.99271 0.94815 0.86598 0.79790 0.83522 0.78116 1.20672 1.21165 1.19929 1.21060 0.92890 0.90078 1.52103 0.92358 1.18954 0.92566 0.92298 0.93970 0.95293 1.21633 0.98562 0.93992 1.00643 1.22013 0.98563 0.99208 0.97296 1.21817 0.93415 0.87865 0.98639 1.48470 1.04782 1.09129 1.70888 1.17859 0.82649 0.87348 0.78525 1.90862 1.60514 1.38248 1.48939 1.21316 0.99233 0.97796 1.00714 1.21674 0.97032 0.91855 0.95000 1.21834 0.99309 0.97694 1.01835 1.20149 0.91881 0.93306 0.89384 1.20812 0.99285 0.86121 1.06690 1.23129 1.02651 1.01161 0.93968 1.22991 1.02660 0.98844 0.95283 1.66893 1.28731 1.03777 1.22428 1.19030 0.87304 0.85884 0.89862 1.84796 1.61882 1.57833 1.22544 1.22345 0.98741 0.80973 0.98672 0.92571 0.92953 0.93127 0.92247 0.92220 0.91876 0.91374 0.83751 0.83877 0.85851 0.88063 0.87918 0.88051 0.88511 0.73861 0.85834 0.93786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.52 11.39 55.43 0.63 -24.89 16 2 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.52 -13.94 8.57 -34.44 -0.29 -14.24 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 10 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 11 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 12 C -0.13 -2.05 6.10 -26.39 -0.16 -2.21 16 13 C 0.11 1.59 5.63 -3.49 -0.02 1.57 16 14 N -0.60 -11.71 2.97 -173.74 -0.52 -12.23 16 15 C 0.55 11.26 6.85 -12.47 -0.09 11.18 16 16 O -0.51 -12.98 16.18 2.20 0.04 -12.94 16 17 C -0.18 -2.99 4.63 -104.69 -0.48 -3.48 16 18 C -0.03 -0.37 7.91 -38.89 -0.31 -0.68 16 19 C -0.19 -1.94 9.34 -39.50 -0.37 -2.31 16 20 C 0.19 2.26 6.46 -82.52 -0.53 1.73 16 21 C -0.11 -0.97 6.21 -91.77 -0.57 -1.54 16 22 C -0.17 -1.04 9.79 -26.70 -0.26 -1.30 16 23 C -0.16 -1.13 10.24 -26.70 -0.27 -1.40 16 24 N -0.50 -7.41 10.28 -9.21 -0.09 -7.50 16 25 C 0.36 5.88 7.76 -16.61 -0.13 5.75 16 26 O -0.46 -7.85 12.76 -21.06 -0.27 -8.11 16 27 C 0.11 2.66 5.41 -3.71 -0.02 2.64 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 0.87 5.37 -51.93 -0.28 0.60 16 35 H 0.14 1.53 7.79 -52.49 -0.41 1.12 16 36 H 0.14 1.02 6.20 -52.49 -0.33 0.69 16 37 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.10 0.54 6.36 -51.93 -0.33 0.21 16 39 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.40 4.96 9.06 45.56 0.41 5.37 16 43 H 0.12 3.47 5.11 -51.93 -0.27 3.20 16 44 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -33.82 357.49 -9.18 -43.00 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -5.39 Total: 5.32 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -3.95 Total: -4.13 kcal Atomic # 7 Polarization: -44.64 SS G_CDS: 0.02 Total: -44.61 kcal Atomic # 8 Polarization: -20.83 SS G_CDS: -0.23 Total: -21.06 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.82 -9.18 -43.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.388 kcal (2) G-P(sol) polarization free energy of solvation -33.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds