Wall clock time and date at job start Tue Mar 31 2020 11:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00301 * 2 1 4 4 H 1.48504 * 109.46986 * 270.00383 * 3 2 1 5 5 H 1.48503 * 109.46994 * 30.00177 * 3 2 1 6 6 H 1.48498 * 109.47352 * 150.00487 * 3 2 1 7 7 C 1.37875 * 119.99986 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00533 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99877 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.49810 * 60.06516 * 9 7 2 11 11 C 1.53048 * 109.52374 * 180.14586 * 9 7 2 12 12 C 1.53040 * 109.53631 * 181.32969 * 11 9 7 13 13 C 1.53621 * 109.24063 * 298.51181 * 12 11 9 14 14 N 1.46923 * 108.54807 * 54.85612 * 13 12 11 15 15 C 1.34777 * 120.63254 * 126.36175 * 14 13 12 16 16 O 1.21592 * 120.00281 * 185.53069 * 15 14 13 17 17 C 1.47526 * 119.99846 * 5.53993 * 15 14 13 18 18 C 1.39990 * 120.60029 * 53.79431 * 17 15 14 19 19 C 1.38336 * 118.35246 * 180.23109 * 18 17 15 20 20 C 1.38358 * 119.45512 * 359.47417 * 19 18 17 21 21 C 1.50703 * 119.40521 * 180.25208 * 20 19 18 22 22 C 1.52993 * 117.50045 * 344.02801 * 21 20 19 23 23 C 1.52998 * 117.50063 * 275.36722 * 21 20 19 24 24 N 1.31882 * 121.18405 * 0.53949 * 20 19 18 25 25 C 1.32226 * 121.80241 * 359.74024 * 24 20 19 26 26 O 1.35427 * 119.80133 * 179.97438 * 25 24 20 27 27 C 1.46924 * 118.73705 * 306.09556 * 14 13 12 28 28 H 0.97001 * 119.99496 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.45547 * 301.35140 * 11 9 7 30 30 H 1.09004 * 109.45826 * 61.31048 * 11 9 7 31 31 H 1.09003 * 109.49852 * 58.58511 * 12 11 9 32 32 H 1.08994 * 109.49573 * 178.65141 * 12 11 9 33 33 H 1.09006 * 109.74181 * 295.11766 * 13 12 11 34 34 H 1.09004 * 109.66491 * 174.55451 * 13 12 11 35 35 H 1.07996 * 120.82228 * 359.95226 * 18 17 15 36 36 H 1.08001 * 120.27136 * 179.74552 * 19 18 17 37 37 H 1.09006 * 115.54302 * 129.69779 * 21 20 19 38 38 H 1.08998 * 117.49818 * 0.02562 * 22 21 20 39 39 H 1.09003 * 117.49683 * 145.01787 * 22 21 20 40 40 H 1.09004 * 117.49421 * 214.98089 * 23 21 20 41 41 H 1.08999 * 117.49974 * 359.97438 * 23 21 20 42 42 H 0.96701 * 114.00314 * 269.97243 * 26 25 24 43 43 H 1.09000 * 109.58444 * 173.64344 * 27 14 13 44 44 H 1.08998 * 109.58683 * 293.92638 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5576 -0.8907 11 6 2.2444 -3.6634 0.0025 12 6 1.4798 -4.9886 -0.0310 13 6 0.6025 -5.0988 1.2253 14 7 -0.2561 -3.9091 1.3015 15 6 -1.5928 -4.0334 1.4213 16 8 -2.3012 -3.0459 1.3823 17 6 -2.1964 -5.3676 1.6001 18 6 -1.7633 -6.2138 2.6277 19 6 -2.3581 -7.4567 2.7499 20 6 -3.3614 -7.8204 1.8692 21 6 -4.0125 -9.1724 2.0068 22 6 -3.2945 -10.2187 2.8615 23 6 -3.3201 -10.3615 1.3377 24 7 -3.7541 -7.0072 0.9080 25 6 -3.2152 -5.8110 0.7437 26 8 -3.6493 -5.0090 -0.2575 27 6 0.3706 -2.5812 1.2505 28 1 -0.4849 0.8401 0.0004 29 1 2.8884 -3.5933 -0.8741 30 1 2.8538 -3.6184 0.9052 31 1 0.8513 -5.0237 -0.9209 32 1 2.1881 -5.8168 -0.0530 33 1 1.2342 -5.1509 2.1121 34 1 -0.0172 -5.9933 1.1626 35 1 -0.9810 -5.9057 3.3055 36 1 -2.0450 -8.1360 3.5290 37 1 -5.1024 -9.1696 2.0248 38 1 -2.3514 -9.9289 3.3247 39 1 -3.9120 -10.9044 3.4417 40 1 -3.9545 -11.1411 0.9160 41 1 -2.3938 -10.1657 0.7977 42 1 -3.1692 -5.1230 -1.0891 43 1 -0.4023 -1.8139 1.2043 44 1 0.9817 -2.4311 2.1405 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824745464.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:18 Heat of formation + Delta-G solvation = -37.632696 kcal Electronic energy + Delta-G solvation = -26727.060307 eV Core-core repulsion = 23030.394278 eV Total energy + Delta-G solvation = -3696.666029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.11353 -40.58518 -38.93615 -38.21297 -37.25063 -35.38854 -34.00710 -33.19552 -31.66329 -31.12730 -27.37592 -26.82655 -25.37991 -24.64544 -23.47774 -23.01785 -22.36188 -21.57348 -20.28589 -19.47456 -18.68205 -18.15566 -17.97322 -17.46934 -16.96766 -16.51632 -16.13033 -15.89228 -15.61928 -15.24209 -15.09434 -14.73687 -14.56051 -14.38539 -14.12408 -14.02617 -13.65722 -13.47903 -13.00031 -12.90449 -12.88838 -12.73548 -12.29301 -12.26141 -12.23151 -11.92707 -11.66619 -11.58418 -11.33306 -11.22338 -10.99804 -10.97636 -10.80356 -10.53833 -10.45040 -9.83290 -9.44609 -8.11230 -6.28971 -0.40258 0.02410 1.39794 1.40894 1.51647 1.61107 2.05479 2.34570 2.41872 2.44819 3.04265 3.16611 3.28038 3.51571 3.71983 3.90293 3.96932 4.01690 4.06772 4.13160 4.20799 4.30300 4.38196 4.52022 4.56762 4.70627 4.76598 4.78992 4.81562 4.84568 4.92435 5.07697 5.10762 5.22616 5.23134 5.24860 5.31062 5.34166 5.40769 5.52888 5.61373 5.88662 5.98754 6.31488 6.41025 6.56902 6.77492 6.84515 7.21515 7.41775 8.91729 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.025840 B = 0.003278 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.317568 B = 8539.088456 C = 9059.171779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.009 3.991 3 Si 0.957 3.043 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.260 1.260 7 C -0.535 4.535 8 H 0.064 0.936 9 C 0.039 3.961 10 H -0.017 1.017 11 C -0.104 4.104 12 C -0.126 4.126 13 C 0.103 3.897 14 N -0.598 5.598 15 C 0.550 3.450 16 O -0.579 6.579 17 C -0.206 4.206 18 C -0.020 4.020 19 C -0.166 4.166 20 C 0.192 3.808 21 C -0.137 4.137 22 C -0.146 4.146 23 C -0.160 4.160 24 N -0.520 5.520 25 C 0.340 3.660 26 O -0.491 6.491 27 C 0.125 3.875 28 H 0.259 0.741 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.045 0.955 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.169 0.831 36 H 0.190 0.810 37 H 0.120 0.880 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.093 0.907 42 H 0.414 0.586 43 H 0.074 0.926 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.683 -25.092 6.982 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.191 4.191 3 Si 0.782 3.218 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.573 4.573 8 H 0.082 0.918 9 C 0.020 3.980 10 H 0.002 0.998 11 C -0.142 4.142 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.330 5.330 15 C 0.338 3.662 16 O -0.459 6.459 17 C -0.213 4.213 18 C -0.046 4.046 19 C -0.185 4.185 20 C 0.053 3.947 21 C -0.156 4.156 22 C -0.183 4.183 23 C -0.197 4.197 24 N -0.239 5.239 25 C 0.162 3.838 26 O -0.300 6.300 27 C 0.003 3.997 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.111 0.889 34 H 0.115 0.885 35 H 0.187 0.813 36 H 0.207 0.793 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.139 0.861 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.274 0.726 43 H 0.092 0.908 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.215 -24.428 6.749 25.440 hybrid contribution 0.727 2.131 -0.465 2.299 sum -1.488 -22.297 6.284 23.214 Atomic orbital electron populations 1.70105 1.07475 1.27211 1.50617 1.25914 0.95508 1.02994 0.94665 0.85569 0.78852 0.79133 0.78204 1.20233 1.21532 1.18351 1.21521 0.93343 0.91397 1.51044 0.91771 1.18891 0.93052 0.93920 0.92122 0.99839 1.21515 0.97600 0.93888 1.01196 1.21988 0.98934 0.98452 0.97053 1.22186 0.93406 0.86671 0.99616 1.48443 1.05253 1.09139 1.70134 1.18492 0.82434 0.88392 0.76904 1.90815 1.62031 1.41010 1.51997 1.20959 1.00588 0.96361 1.03369 1.21966 0.97254 0.91745 0.93632 1.22258 0.97547 0.97115 1.01620 1.20869 0.91707 0.93853 0.88229 1.20889 0.99319 0.85236 1.10159 1.23306 1.02775 0.98910 0.93302 1.23085 1.02307 0.97727 0.96592 1.66957 1.29274 1.03532 1.24146 1.19165 0.87950 0.86654 0.90068 1.84744 1.62711 1.58867 1.23656 1.21763 0.97184 0.82414 0.98340 0.93228 0.92958 0.91936 0.93591 0.87578 0.88922 0.88515 0.81339 0.79341 0.86197 0.86476 0.86087 0.87001 0.88850 0.72598 0.90763 0.93709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.48 11.39 21.45 0.24 -56.24 16 2 C 0.01 0.48 5.30 84.65 0.45 0.93 16 3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.53 -29.25 8.57 25.60 0.22 -29.03 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16 10 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 11 C -0.10 -3.89 5.11 30.62 0.16 -3.73 16 12 C -0.13 -3.59 6.10 30.82 0.19 -3.40 16 13 C 0.10 2.79 5.63 86.51 0.49 3.27 16 14 N -0.60 -23.72 2.97 -821.84 -2.44 -26.16 16 15 C 0.55 23.47 6.85 86.69 0.59 24.06 16 16 O -0.58 -31.86 16.18 -1.05 -0.02 -31.87 16 17 C -0.21 -6.68 4.63 -19.91 -0.09 -6.77 16 18 C -0.02 -0.44 7.91 22.72 0.18 -0.26 16 19 C -0.17 -2.74 9.34 22.32 0.21 -2.53 16 20 C 0.19 4.04 6.46 42.58 0.28 4.31 16 21 C -0.14 -1.98 6.21 -11.54 -0.07 -2.05 16 22 C -0.15 -1.03 9.79 30.62 0.30 -0.73 16 23 C -0.16 -1.67 10.24 30.62 0.31 -1.35 16 24 N -0.52 -15.17 10.28 -296.06 -3.04 -18.21 16 25 C 0.34 11.44 7.76 85.13 0.66 12.10 16 26 O -0.49 -17.95 12.76 -84.27 -1.08 -19.03 16 27 C 0.12 6.19 5.41 86.36 0.47 6.66 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.10 2.13 5.37 -2.39 -0.01 2.12 16 35 H 0.17 2.83 7.79 -2.91 -0.02 2.81 16 36 H 0.19 1.39 6.20 -2.91 -0.02 1.38 16 37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.12 0.47 6.36 -2.39 -0.02 0.46 16 39 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.41 11.46 9.06 -74.06 -0.67 10.79 16 43 H 0.07 4.49 5.11 -2.39 -0.01 4.48 16 44 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -82.23 357.49 0.37 -81.86 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 0.36 Total: 19.77 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 4.31 Total: 3.42 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -5.24 Total: -100.61 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -1.09 Total: -50.90 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -82.23 0.37 -81.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745464.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.230 kcal (2) G-P(sol) polarization free energy of solvation -82.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds