Wall clock time and date at job start Tue Mar 31 2020 11:01:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31513 * 1
3 3 Si 1.86804 * 120.00301 * 2 1
4 4 H 1.48504 * 109.46986 * 270.00383 * 3 2 1
5 5 H 1.48503 * 109.46994 * 30.00177 * 3 2 1
6 6 H 1.48498 * 109.47352 * 150.00487 * 3 2 1
7 7 C 1.37875 * 119.99986 * 180.02562 * 2 1 3
8 8 H 1.08001 * 120.00533 * 179.97438 * 7 2 1
9 9 C 1.50702 * 119.99877 * 359.97438 * 7 2 1
10 10 H 1.08998 * 109.49810 * 60.06516 * 9 7 2
11 11 C 1.53048 * 109.52374 * 180.14586 * 9 7 2
12 12 C 1.53040 * 109.53631 * 181.32969 * 11 9 7
13 13 C 1.53621 * 109.24063 * 298.51181 * 12 11 9
14 14 N 1.46923 * 108.54807 * 54.85612 * 13 12 11
15 15 C 1.34777 * 120.63254 * 126.36175 * 14 13 12
16 16 O 1.21592 * 120.00281 * 185.53069 * 15 14 13
17 17 C 1.47526 * 119.99846 * 5.53993 * 15 14 13
18 18 C 1.39990 * 120.60029 * 53.79431 * 17 15 14
19 19 C 1.38336 * 118.35246 * 180.23109 * 18 17 15
20 20 C 1.38358 * 119.45512 * 359.47417 * 19 18 17
21 21 C 1.50703 * 119.40521 * 180.25208 * 20 19 18
22 22 C 1.52993 * 117.50045 * 344.02801 * 21 20 19
23 23 C 1.52998 * 117.50063 * 275.36722 * 21 20 19
24 24 N 1.31882 * 121.18405 * 0.53949 * 20 19 18
25 25 C 1.32226 * 121.80241 * 359.74024 * 24 20 19
26 26 O 1.35427 * 119.80133 * 179.97438 * 25 24 20
27 27 C 1.46924 * 118.73705 * 306.09556 * 14 13 12
28 28 H 0.97001 * 119.99496 * 359.97438 * 1 2 3
29 29 H 1.09000 * 109.45547 * 301.35140 * 11 9 7
30 30 H 1.09004 * 109.45826 * 61.31048 * 11 9 7
31 31 H 1.09003 * 109.49852 * 58.58511 * 12 11 9
32 32 H 1.08994 * 109.49573 * 178.65141 * 12 11 9
33 33 H 1.09006 * 109.74181 * 295.11766 * 13 12 11
34 34 H 1.09004 * 109.66491 * 174.55451 * 13 12 11
35 35 H 1.07996 * 120.82228 * 359.95226 * 18 17 15
36 36 H 1.08001 * 120.27136 * 179.74552 * 19 18 17
37 37 H 1.09006 * 115.54302 * 129.69779 * 21 20 19
38 38 H 1.08998 * 117.49818 * 0.02562 * 22 21 20
39 39 H 1.09003 * 117.49683 * 145.01787 * 22 21 20
40 40 H 1.09004 * 117.49421 * 214.98089 * 23 21 20
41 41 H 1.08999 * 117.49974 * 359.97438 * 23 21 20
42 42 H 0.96701 * 114.00314 * 269.97243 * 26 25 24
43 43 H 1.09000 * 109.58444 * 173.64344 * 27 14 13
44 44 H 1.08998 * 109.58683 * 293.92638 * 27 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 2.4967 2.0464 -1.4001
5 1 1.4467 2.6527 0.7001
6 1 3.5468 1.4401 0.6999
7 6 2.0045 -1.1940 -0.0005
8 1 3.0845 -1.1941 -0.0010
9 6 1.2510 -2.4991 -0.0005
10 1 0.6247 -2.5576 -0.8907
11 6 2.2444 -3.6634 0.0025
12 6 1.4798 -4.9886 -0.0310
13 6 0.6025 -5.0988 1.2253
14 7 -0.2561 -3.9091 1.3015
15 6 -1.5928 -4.0334 1.4213
16 8 -2.3012 -3.0459 1.3823
17 6 -2.1964 -5.3676 1.6001
18 6 -1.7633 -6.2138 2.6277
19 6 -2.3581 -7.4567 2.7499
20 6 -3.3614 -7.8204 1.8692
21 6 -4.0125 -9.1724 2.0068
22 6 -3.2945 -10.2187 2.8615
23 6 -3.3201 -10.3615 1.3377
24 7 -3.7541 -7.0072 0.9080
25 6 -3.2152 -5.8110 0.7437
26 8 -3.6493 -5.0090 -0.2575
27 6 0.3706 -2.5812 1.2505
28 1 -0.4849 0.8401 0.0004
29 1 2.8884 -3.5933 -0.8741
30 1 2.8538 -3.6184 0.9052
31 1 0.8513 -5.0237 -0.9209
32 1 2.1881 -5.8168 -0.0530
33 1 1.2342 -5.1509 2.1121
34 1 -0.0172 -5.9933 1.1626
35 1 -0.9810 -5.9057 3.3055
36 1 -2.0450 -8.1360 3.5290
37 1 -5.1024 -9.1696 2.0248
38 1 -2.3514 -9.9289 3.3247
39 1 -3.9120 -10.9044 3.4417
40 1 -3.9545 -11.1411 0.9160
41 1 -2.3938 -10.1657 0.7977
42 1 -3.1692 -5.1230 -1.0891
43 1 -0.4023 -1.8139 1.2043
44 1 0.9817 -2.4311 2.1405
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000824745464.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:01:18
Heat of formation + Delta-G solvation = -37.632696 kcal
Electronic energy + Delta-G solvation = -26727.060307 eV
Core-core repulsion = 23030.394278 eV
Total energy + Delta-G solvation = -3696.666029 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-42.11353 -40.58518 -38.93615 -38.21297 -37.25063 -35.38854 -34.00710 -33.19552
-31.66329 -31.12730 -27.37592 -26.82655 -25.37991 -24.64544 -23.47774 -23.01785
-22.36188 -21.57348 -20.28589 -19.47456 -18.68205 -18.15566 -17.97322 -17.46934
-16.96766 -16.51632 -16.13033 -15.89228 -15.61928 -15.24209 -15.09434 -14.73687
-14.56051 -14.38539 -14.12408 -14.02617 -13.65722 -13.47903 -13.00031 -12.90449
-12.88838 -12.73548 -12.29301 -12.26141 -12.23151 -11.92707 -11.66619 -11.58418
-11.33306 -11.22338 -10.99804 -10.97636 -10.80356 -10.53833 -10.45040 -9.83290
-9.44609 -8.11230 -6.28971 -0.40258 0.02410 1.39794 1.40894 1.51647
1.61107 2.05479 2.34570 2.41872 2.44819 3.04265 3.16611 3.28038
3.51571 3.71983 3.90293 3.96932 4.01690 4.06772 4.13160 4.20799
4.30300 4.38196 4.52022 4.56762 4.70627 4.76598 4.78992 4.81562
4.84568 4.92435 5.07697 5.10762 5.22616 5.23134 5.24860 5.31062
5.34166 5.40769 5.52888 5.61373 5.88662 5.98754 6.31488 6.41025
6.56902 6.77492 6.84515 7.21515 7.41775 8.91729
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.025840 B = 0.003278 C = 0.003090
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1083.317568 B = 8539.088456 C = 9059.171779
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.915 5.915
2 C 0.009 3.991
3 Si 0.957 3.043
4 H -0.277 1.277
5 H -0.289 1.289
6 H -0.260 1.260
7 C -0.535 4.535
8 H 0.064 0.936
9 C 0.039 3.961
10 H -0.017 1.017
11 C -0.104 4.104
12 C -0.126 4.126
13 C 0.103 3.897
14 N -0.598 5.598
15 C 0.550 3.450
16 O -0.579 6.579
17 C -0.206 4.206
18 C -0.020 4.020
19 C -0.166 4.166
20 C 0.192 3.808
21 C -0.137 4.137
22 C -0.146 4.146
23 C -0.160 4.160
24 N -0.520 5.520
25 C 0.340 3.660
26 O -0.491 6.491
27 C 0.125 3.875
28 H 0.259 0.741
29 H 0.052 0.948
30 H 0.062 0.938
31 H 0.045 0.955
32 H 0.106 0.894
33 H 0.093 0.907
34 H 0.097 0.903
35 H 0.169 0.831
36 H 0.190 0.810
37 H 0.120 0.880
38 H 0.117 0.883
39 H 0.121 0.879
40 H 0.112 0.888
41 H 0.093 0.907
42 H 0.414 0.586
43 H 0.074 0.926
44 H 0.045 0.955
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.683 -25.092 6.982 26.055
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.554 5.554
2 C -0.191 4.191
3 Si 0.782 3.218
4 H -0.202 1.202
5 H -0.215 1.215
6 H -0.184 1.184
7 C -0.573 4.573
8 H 0.082 0.918
9 C 0.020 3.980
10 H 0.002 0.998
11 C -0.142 4.142
12 C -0.164 4.164
13 C -0.019 4.019
14 N -0.330 5.330
15 C 0.338 3.662
16 O -0.459 6.459
17 C -0.213 4.213
18 C -0.046 4.046
19 C -0.185 4.185
20 C 0.053 3.947
21 C -0.156 4.156
22 C -0.183 4.183
23 C -0.197 4.197
24 N -0.239 5.239
25 C 0.162 3.838
26 O -0.300 6.300
27 C 0.003 3.997
28 H 0.068 0.932
29 H 0.070 0.930
30 H 0.081 0.919
31 H 0.064 0.936
32 H 0.124 0.876
33 H 0.111 0.889
34 H 0.115 0.885
35 H 0.187 0.813
36 H 0.207 0.793
37 H 0.138 0.862
38 H 0.135 0.865
39 H 0.139 0.861
40 H 0.130 0.870
41 H 0.112 0.888
42 H 0.274 0.726
43 H 0.092 0.908
44 H 0.063 0.937
Dipole moment (debyes) X Y Z Total
from point charges -2.215 -24.428 6.749 25.440
hybrid contribution 0.727 2.131 -0.465 2.299
sum -1.488 -22.297 6.284 23.214
Atomic orbital electron populations
1.70105 1.07475 1.27211 1.50617 1.25914 0.95508 1.02994 0.94665
0.85569 0.78852 0.79133 0.78204 1.20233 1.21532 1.18351 1.21521
0.93343 0.91397 1.51044 0.91771 1.18891 0.93052 0.93920 0.92122
0.99839 1.21515 0.97600 0.93888 1.01196 1.21988 0.98934 0.98452
0.97053 1.22186 0.93406 0.86671 0.99616 1.48443 1.05253 1.09139
1.70134 1.18492 0.82434 0.88392 0.76904 1.90815 1.62031 1.41010
1.51997 1.20959 1.00588 0.96361 1.03369 1.21966 0.97254 0.91745
0.93632 1.22258 0.97547 0.97115 1.01620 1.20869 0.91707 0.93853
0.88229 1.20889 0.99319 0.85236 1.10159 1.23306 1.02775 0.98910
0.93302 1.23085 1.02307 0.97727 0.96592 1.66957 1.29274 1.03532
1.24146 1.19165 0.87950 0.86654 0.90068 1.84744 1.62711 1.58867
1.23656 1.21763 0.97184 0.82414 0.98340 0.93228 0.92958 0.91936
0.93591 0.87578 0.88922 0.88515 0.81339 0.79341 0.86197 0.86476
0.86087 0.87001 0.88850 0.72598 0.90763 0.93709
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.48 11.39 21.45 0.24 -56.24 16
2 C 0.01 0.48 5.30 84.65 0.45 0.93 16
3 Si 0.96 44.43 29.54 68.60 2.03 46.46 16
4 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16
6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16
7 C -0.53 -29.25 8.57 25.60 0.22 -29.03 16
8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16
9 C 0.04 1.97 2.25 -11.46 -0.03 1.94 16
10 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16
11 C -0.10 -3.89 5.11 30.62 0.16 -3.73 16
12 C -0.13 -3.59 6.10 30.82 0.19 -3.40 16
13 C 0.10 2.79 5.63 86.51 0.49 3.27 16
14 N -0.60 -23.72 2.97 -821.84 -2.44 -26.16 16
15 C 0.55 23.47 6.85 86.69 0.59 24.06 16
16 O -0.58 -31.86 16.18 -1.05 -0.02 -31.87 16
17 C -0.21 -6.68 4.63 -19.91 -0.09 -6.77 16
18 C -0.02 -0.44 7.91 22.72 0.18 -0.26 16
19 C -0.17 -2.74 9.34 22.32 0.21 -2.53 16
20 C 0.19 4.04 6.46 42.58 0.28 4.31 16
21 C -0.14 -1.98 6.21 -11.54 -0.07 -2.05 16
22 C -0.15 -1.03 9.79 30.62 0.30 -0.73 16
23 C -0.16 -1.67 10.24 30.62 0.31 -1.35 16
24 N -0.52 -15.17 10.28 -296.06 -3.04 -18.21 16
25 C 0.34 11.44 7.76 85.13 0.66 12.10 16
26 O -0.49 -17.95 12.76 -84.27 -1.08 -19.03 16
27 C 0.12 6.19 5.41 86.36 0.47 6.66 16
28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16
29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
30 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16
31 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16
32 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16
33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16
34 H 0.10 2.13 5.37 -2.39 -0.01 2.12 16
35 H 0.17 2.83 7.79 -2.91 -0.02 2.81 16
36 H 0.19 1.39 6.20 -2.91 -0.02 1.38 16
37 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16
38 H 0.12 0.47 6.36 -2.39 -0.02 0.46 16
39 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16
40 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16
41 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16
42 H 0.41 11.46 9.06 -74.06 -0.67 10.79 16
43 H 0.07 4.49 5.11 -2.39 -0.01 4.48 16
44 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16
Total: -1.00 -82.23 357.49 0.37 -81.86
By element:
Atomic # 1 Polarization: 19.41 SS G_CDS: 0.36 Total: 19.77 kcal
Atomic # 6 Polarization: -0.89 SS G_CDS: 4.31 Total: 3.42 kcal
Atomic # 7 Polarization: -95.38 SS G_CDS: -5.24 Total: -100.61 kcal
Atomic # 8 Polarization: -49.81 SS G_CDS: -1.09 Total: -50.90 kcal
Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal
Total: -82.23 0.37 -81.86 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000824745464.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.230 kcal
(2) G-P(sol) polarization free energy of solvation -82.230 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.000 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.367 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.862 kcal
(6) G-S(sol) free energy of system = (1) + (5) -37.633 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds