Wall clock time and date at job start Tue Mar 31 2020 11:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00156 * 2 1 4 4 C 1.52999 * 109.47384 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47281 * 64.99496 * 4 3 2 6 6 C 1.37101 * 120.00272 * 270.00272 * 5 4 3 7 7 H 1.07993 * 120.00474 * 139.96684 * 6 5 4 8 8 C 1.38955 * 119.99709 * 319.97381 * 6 5 4 9 9 N 1.31408 * 120.00052 * 163.85711 * 8 6 5 10 10 Si 1.86800 * 119.99965 * 343.84906 * 8 6 5 11 11 H 1.48500 * 109.47117 * 95.34876 * 10 8 6 12 12 H 1.48499 * 109.47439 * 215.35107 * 10 8 6 13 13 H 1.48507 * 109.47287 * 335.34947 * 10 8 6 14 14 C 1.34773 * 120.00073 * 89.99963 * 5 4 3 15 15 O 1.21296 * 119.99864 * 5.47322 * 14 5 4 16 16 C 1.50700 * 120.00151 * 185.47171 * 14 5 4 17 17 C 1.50703 * 109.47305 * 175.00011 * 16 14 5 18 18 C 1.34242 * 126.49801 * 265.00338 * 17 16 14 19 19 N 1.36828 * 109.92391 * 179.97438 * 18 17 16 20 20 H 0.97002 * 125.06042 * 179.97438 * 19 18 17 21 21 C 1.37681 * 109.88120 * 0.02562 * 19 18 17 22 22 C 1.39126 * 133.51234 * 180.02562 * 21 19 18 23 23 C 1.37749 * 119.77682 * 179.73130 * 22 21 19 24 24 C 1.50706 * 119.66390 * 180.27101 * 23 22 21 25 25 C 1.38825 * 120.66891 * 0.52110 * 23 22 21 26 26 C 1.36628 * 120.52910 * 359.45293 * 25 23 22 27 27 C 1.39633 * 119.75850 * 0.27772 * 26 25 23 28 28 H 1.08992 * 109.47454 * 300.00778 * 1 2 3 29 29 H 1.09004 * 109.46790 * 60.01131 * 1 2 3 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47626 * 59.99075 * 3 2 1 32 32 H 1.09005 * 109.46592 * 299.99514 * 3 2 1 33 33 H 1.09002 * 109.47085 * 304.99809 * 4 3 2 34 34 H 1.08996 * 109.47292 * 184.99550 * 4 3 2 35 35 H 0.97001 * 120.00020 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47209 * 55.00073 * 16 14 5 37 37 H 1.09002 * 109.47074 * 294.99928 * 16 14 5 38 38 H 1.08000 * 125.03873 * 359.97438 * 18 17 16 39 39 H 1.07994 * 120.11113 * 359.96687 * 22 21 19 40 40 H 1.09002 * 109.47179 * 270.23959 * 24 23 22 41 41 H 1.08998 * 109.46936 * 30.24419 * 24 23 22 42 42 H 1.09008 * 109.46906 * 150.24233 * 24 23 22 43 43 H 1.08003 * 119.74008 * 179.73359 * 25 23 22 44 44 H 1.07999 * 120.12370 * 180.25722 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0980 -0.7992 -1.3344 7 1 3.7863 -1.3152 -2.2304 8 6 4.6220 -1.5169 -0.2661 9 7 4.4527 -2.8185 -0.2028 10 14 5.5672 -0.6314 1.0800 11 1 4.6507 -0.3215 2.2066 12 1 6.6702 -1.5000 1.5638 13 1 6.1321 0.6313 0.5397 14 6 4.2634 1.3327 -2.3200 15 8 4.2524 2.5413 -2.2183 16 6 4.5976 0.6907 -3.6418 17 6 4.7556 1.7587 -4.6933 18 6 3.8102 2.1869 -5.5448 19 7 4.3197 3.1665 -6.3529 20 1 3.8254 3.6285 -7.0480 21 6 5.6388 3.3980 -6.0335 22 6 6.6063 4.2661 -6.5293 23 6 7.8706 4.2658 -5.9823 24 6 8.9149 5.2115 -6.5173 25 6 8.1939 3.3995 -4.9469 26 6 7.2592 2.5390 -4.4444 27 6 5.9698 2.5263 -4.9802 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8462 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0901 35 1 4.8181 -3.3194 0.5431 36 1 3.7941 0.0130 -3.9301 37 1 5.5288 0.1316 -3.5491 38 1 2.7977 1.8136 -5.5858 39 1 6.3659 4.9406 -7.3376 40 1 9.4585 4.7304 -7.3305 41 1 8.4310 6.1150 -6.8882 42 1 9.6107 5.4731 -5.7200 43 1 9.1911 3.4089 -4.5320 44 1 7.5167 1.8707 -3.6360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837234565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:09 Heat of formation + Delta-G solvation = -10.859841 kcal Electronic energy + Delta-G solvation = -26516.131576 eV Core-core repulsion = 22820.626505 eV Total energy + Delta-G solvation = -3695.505071 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96430 -38.79923 -37.17029 -36.94400 -34.71640 -32.72811 -31.85621 -31.31181 -29.76203 -29.24037 -27.04772 -25.87655 -25.59316 -24.47288 -22.51595 -22.41398 -20.66561 -19.54052 -18.59918 -17.57047 -16.66710 -16.37789 -15.96871 -15.73164 -15.37089 -14.93793 -14.64445 -14.48280 -14.22753 -14.03448 -13.80037 -13.53135 -13.48641 -13.20435 -12.69053 -12.50632 -12.32402 -12.09298 -11.93895 -11.85672 -11.62675 -11.48835 -11.23521 -10.99141 -10.85185 -10.76470 -10.71874 -10.43378 -10.01394 -9.79428 -9.25176 -9.07641 -9.03779 -8.46265 -7.82469 -7.67963 -7.23393 -6.29999 -3.92721 1.42059 1.91773 3.02662 3.14684 3.29556 3.35998 3.40035 3.82848 4.16093 4.25027 4.41893 4.58941 4.94029 5.08970 5.14497 5.17458 5.29617 5.45537 5.60651 5.60982 5.64000 5.65905 5.69525 5.81146 5.83783 5.86390 5.91922 5.99262 6.05860 6.08588 6.15540 6.23114 6.27805 6.40599 6.46391 6.49766 6.62842 6.82995 6.89543 7.05313 7.18686 7.47547 7.49401 7.82380 7.83010 8.22594 8.36807 9.10958 9.48586 9.79953 10.81361 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.003946 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.099462 B = 7093.809875 C = 7952.736216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.356 6.356 3 C 0.056 3.944 4 C 0.102 3.898 5 N -0.463 5.463 6 C -0.326 4.326 7 H 0.103 0.897 8 C 0.072 3.928 9 N -0.866 5.866 10 Si 0.876 3.124 11 H -0.276 1.276 12 H -0.291 1.291 13 H -0.263 1.263 14 C 0.486 3.514 15 O -0.592 6.592 16 C -0.049 4.049 17 C -0.125 4.125 18 C 0.042 3.958 19 N -0.599 5.599 20 H 0.410 0.590 21 C 0.099 3.901 22 C -0.139 4.139 23 C -0.074 4.074 24 C -0.107 4.107 25 C -0.154 4.154 26 C -0.055 4.055 27 C -0.091 4.091 28 H 0.029 0.971 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.041 0.959 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.271 0.729 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.165 0.835 39 H 0.113 0.887 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.117 0.883 44 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.299 10.227 -9.423 13.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.273 6.273 3 C -0.022 4.022 4 C -0.022 4.022 5 N -0.184 5.184 6 C -0.453 4.453 7 H 0.120 0.880 8 C -0.134 4.134 9 N -0.503 5.503 10 Si 0.705 3.295 11 H -0.204 1.204 12 H -0.218 1.218 13 H -0.188 1.188 14 C 0.276 3.724 15 O -0.476 6.476 16 C -0.089 4.089 17 C -0.132 4.132 18 C -0.083 4.083 19 N -0.202 5.202 20 H 0.246 0.754 21 C -0.008 4.008 22 C -0.160 4.160 23 C -0.075 4.075 24 C -0.164 4.164 25 C -0.173 4.173 26 C -0.073 4.073 27 C -0.095 4.095 28 H 0.047 0.953 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.183 0.817 39 H 0.131 0.869 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.083 0.917 43 H 0.135 0.865 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.335 10.490 -9.336 14.047 hybrid contribution -0.258 0.597 0.676 0.938 sum 0.078 11.087 -8.660 14.069 Atomic orbital electron populations 1.22656 0.83166 1.02064 0.98645 1.88235 1.17545 1.26573 1.94977 1.22884 0.95133 0.85174 0.99044 1.21679 0.91953 0.98950 0.89574 1.43659 1.58502 1.07078 1.09172 1.18944 1.42032 0.79068 1.05244 0.88001 1.25227 0.95723 0.95024 0.97435 1.69705 1.42412 1.06665 1.31480 0.86961 0.79961 0.80330 0.82297 1.20350 1.21818 1.18754 1.20412 0.79098 0.86576 0.86357 1.90550 1.56848 1.14631 1.85614 1.19738 1.04051 0.95055 0.90068 1.19984 0.92174 1.01486 0.99584 1.21477 0.98721 0.93297 0.94796 1.41577 1.09388 1.35424 1.33818 0.75378 1.18177 0.85123 0.99295 0.98253 1.19710 0.92159 1.01238 1.02861 1.19441 0.93866 0.97598 0.96599 1.20720 0.97189 0.97594 1.00904 1.20430 0.99446 0.98486 0.98964 1.20324 0.91278 0.97725 0.98005 1.19042 0.94286 0.98608 0.97602 0.95272 0.94987 0.90085 0.94091 0.93545 0.91217 0.89782 0.91827 0.89100 0.88469 0.81730 0.86904 0.91571 0.92059 0.91688 0.86478 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.36 -7.62 10.18 -35.23 -0.36 -7.98 16 3 C 0.06 1.11 6.28 37.16 0.23 1.35 16 4 C 0.10 2.30 4.59 -4.04 -0.02 2.28 16 5 N -0.46 -11.17 2.14 -114.81 -0.25 -11.41 16 6 C -0.33 -8.46 8.64 -14.93 -0.13 -8.59 16 7 H 0.10 2.75 7.18 -52.49 -0.38 2.38 16 8 C 0.07 1.93 5.39 -17.47 -0.09 1.84 16 9 N -0.87 -24.32 13.96 55.50 0.77 -23.55 16 10 Si 0.88 21.07 24.75 -169.99 -4.21 16.86 16 11 H -0.28 -6.48 6.77 56.52 0.38 -6.10 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.26 -6.38 7.05 56.52 0.40 -5.98 16 14 C 0.49 11.27 7.61 -10.99 -0.08 11.19 16 15 O -0.59 -14.86 15.60 5.54 0.09 -14.77 16 16 C -0.05 -0.97 4.95 -29.03 -0.14 -1.11 16 17 C -0.13 -2.29 4.82 -102.71 -0.49 -2.79 16 18 C 0.04 0.64 11.73 -16.73 -0.20 0.44 16 19 N -0.60 -8.15 6.07 -10.65 -0.06 -8.22 16 20 H 0.41 3.99 8.96 -40.82 -0.37 3.63 16 21 C 0.10 1.57 7.28 -83.99 -0.61 0.95 16 22 C -0.14 -1.92 9.71 -39.43 -0.38 -2.30 16 23 C -0.07 -0.99 5.88 -104.58 -0.61 -1.61 16 24 C -0.11 -1.04 9.99 36.01 0.36 -0.68 16 25 C -0.15 -2.27 9.61 -39.95 -0.38 -2.65 16 26 C -0.05 -0.95 10.05 -39.64 -0.40 -1.34 16 27 C -0.09 -1.65 6.35 -105.14 -0.67 -2.32 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 1.64 3.13 -51.93 -0.16 1.48 16 34 H 0.08 1.84 7.35 -51.93 -0.38 1.46 16 35 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.09 1.69 7.59 -51.93 -0.39 1.29 16 37 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 38 H 0.17 2.05 8.06 -52.49 -0.42 1.62 16 39 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.08 -51.93 -0.42 0.11 16 42 H 0.06 0.58 8.08 -51.92 -0.42 0.16 16 43 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.12 2.08 8.06 -52.49 -0.42 1.65 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -32.83 365.41 -7.35 -40.18 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -6.33 Total: 7.10 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.51 Total: -3.72 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.46 Total: -43.18 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.27 Total: -22.75 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.21 Total: 16.86 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.83 -7.35 -40.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.318 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds