Wall clock time and date at job start Tue Mar 31 2020 11:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 114.00156 * 2 1 4 4 C 1.52999 * 109.47384 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47281 * 64.99496 * 4 3 2 6 6 C 1.37101 * 120.00272 * 270.00272 * 5 4 3 7 7 H 1.07993 * 120.00474 * 139.96684 * 6 5 4 8 8 C 1.38955 * 119.99709 * 319.97381 * 6 5 4 9 9 N 1.31408 * 120.00052 * 163.85711 * 8 6 5 10 10 Si 1.86800 * 119.99965 * 343.84906 * 8 6 5 11 11 H 1.48500 * 109.47117 * 95.34876 * 10 8 6 12 12 H 1.48499 * 109.47439 * 215.35107 * 10 8 6 13 13 H 1.48507 * 109.47287 * 335.34947 * 10 8 6 14 14 C 1.34773 * 120.00073 * 89.99963 * 5 4 3 15 15 O 1.21296 * 119.99864 * 5.47322 * 14 5 4 16 16 C 1.50700 * 120.00151 * 185.47171 * 14 5 4 17 17 C 1.50703 * 109.47305 * 175.00011 * 16 14 5 18 18 C 1.34242 * 126.49801 * 265.00338 * 17 16 14 19 19 N 1.36828 * 109.92391 * 179.97438 * 18 17 16 20 20 H 0.97002 * 125.06042 * 179.97438 * 19 18 17 21 21 C 1.37681 * 109.88120 * 0.02562 * 19 18 17 22 22 C 1.39126 * 133.51234 * 180.02562 * 21 19 18 23 23 C 1.37749 * 119.77682 * 179.73130 * 22 21 19 24 24 C 1.50706 * 119.66390 * 180.27101 * 23 22 21 25 25 C 1.38825 * 120.66891 * 0.52110 * 23 22 21 26 26 C 1.36628 * 120.52910 * 359.45293 * 25 23 22 27 27 C 1.39633 * 119.75850 * 0.27772 * 26 25 23 28 28 H 1.08992 * 109.47454 * 300.00778 * 1 2 3 29 29 H 1.09004 * 109.46790 * 60.01131 * 1 2 3 30 30 H 1.09004 * 109.46866 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47626 * 59.99075 * 3 2 1 32 32 H 1.09005 * 109.46592 * 299.99514 * 3 2 1 33 33 H 1.09002 * 109.47085 * 304.99809 * 4 3 2 34 34 H 1.08996 * 109.47292 * 184.99550 * 4 3 2 35 35 H 0.97001 * 120.00020 * 180.02562 * 9 8 6 36 36 H 1.09001 * 109.47209 * 55.00073 * 16 14 5 37 37 H 1.09002 * 109.47074 * 294.99928 * 16 14 5 38 38 H 1.08000 * 125.03873 * 359.97438 * 18 17 16 39 39 H 1.07994 * 120.11113 * 359.96687 * 22 21 19 40 40 H 1.09002 * 109.47179 * 270.23959 * 24 23 22 41 41 H 1.08998 * 109.46936 * 30.24419 * 24 23 22 42 42 H 1.09008 * 109.46906 * 150.24233 * 24 23 22 43 43 H 1.08003 * 119.74008 * 179.73359 * 25 23 22 44 44 H 1.07999 * 120.12370 * 180.25722 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5638 -1.2508 6 6 4.0980 -0.7992 -1.3344 7 1 3.7863 -1.3152 -2.2304 8 6 4.6220 -1.5169 -0.2661 9 7 4.4527 -2.8185 -0.2028 10 14 5.5672 -0.6314 1.0800 11 1 4.6507 -0.3215 2.2066 12 1 6.6702 -1.5000 1.5638 13 1 6.1321 0.6313 0.5397 14 6 4.2634 1.3327 -2.3200 15 8 4.2524 2.5413 -2.2183 16 6 4.5976 0.6907 -3.6418 17 6 4.7556 1.7587 -4.6933 18 6 3.8102 2.1869 -5.5448 19 7 4.3197 3.1665 -6.3529 20 1 3.8254 3.6285 -7.0480 21 6 5.6388 3.3980 -6.0335 22 6 6.6063 4.2661 -6.5293 23 6 7.8706 4.2658 -5.9823 24 6 8.9149 5.2115 -6.5173 25 6 8.1939 3.3995 -4.9469 26 6 7.2592 2.5390 -4.4444 27 6 5.9698 2.5263 -4.9802 28 1 -0.3634 0.5139 0.8898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.6885 1.8465 0.8899 32 1 1.6886 1.8462 -0.8901 33 1 3.8508 0.5685 0.8427 34 1 3.9784 2.1765 0.0901 35 1 4.8181 -3.3194 0.5431 36 1 3.7941 0.0130 -3.9301 37 1 5.5288 0.1316 -3.5491 38 1 2.7977 1.8136 -5.5858 39 1 6.3659 4.9406 -7.3376 40 1 9.4585 4.7304 -7.3305 41 1 8.4310 6.1150 -6.8882 42 1 9.6107 5.4731 -5.7200 43 1 9.1911 3.4089 -4.5320 44 1 7.5167 1.8707 -3.6360 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837234565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:47:06 Heat of formation + Delta-G solvation = -31.194002 kcal Electronic energy + Delta-G solvation = -26517.013331 eV Core-core repulsion = 22820.626505 eV Total energy + Delta-G solvation = -3696.386826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.15644 -40.60902 -38.61663 -38.17768 -36.60270 -34.07232 -33.84488 -32.51332 -31.19199 -30.54423 -28.40444 -27.22079 -26.84370 -26.32796 -24.07467 -23.64729 -21.77295 -21.16919 -20.23029 -18.91193 -18.30502 -18.14186 -17.52258 -17.09509 -16.97773 -16.33352 -16.16890 -16.00343 -15.56966 -15.50647 -15.16475 -15.00623 -14.67936 -14.48400 -14.25564 -14.01606 -13.76582 -13.51870 -13.47585 -13.09894 -13.00477 -12.85948 -12.69621 -12.58487 -12.38203 -12.18078 -12.05926 -11.94130 -11.66350 -11.61180 -11.04689 -10.62446 -10.49203 -10.22317 -9.63404 -8.98243 -8.44710 -8.37064 -6.00671 0.25799 0.74982 1.21115 1.32401 1.41866 1.75759 1.97121 2.24900 2.31641 2.71817 2.94034 3.01647 3.21103 3.86507 3.98326 4.05230 4.09412 4.15245 4.19573 4.37356 4.38334 4.43183 4.47175 4.55435 4.56579 4.59874 4.68825 4.70219 4.77080 4.85882 4.88052 4.91685 4.95050 4.98198 5.06068 5.25159 5.32882 5.53905 5.67893 5.74510 5.86452 5.91813 6.17821 6.31443 6.32580 6.41631 6.82709 7.08420 7.52235 7.86788 8.77195 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.016069 B = 0.003946 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.099462 B = 7093.809875 C = 7952.736216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.062 3.938 4 C 0.092 3.908 5 N -0.473 5.473 6 C -0.313 4.313 7 H 0.083 0.917 8 C 0.034 3.966 9 N -0.903 5.903 10 Si 0.923 3.077 11 H -0.264 1.264 12 H -0.288 1.288 13 H -0.271 1.271 14 C 0.485 3.515 15 O -0.610 6.610 16 C -0.037 4.037 17 C -0.173 4.173 18 C 0.061 3.939 19 N -0.582 5.582 20 H 0.431 0.569 21 C 0.086 3.914 22 C -0.136 4.136 23 C -0.078 4.078 24 C -0.104 4.104 25 C -0.153 4.153 26 C -0.091 4.091 27 C -0.125 4.125 28 H 0.054 0.946 29 H 0.043 0.957 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.274 0.726 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.194 0.806 39 H 0.146 0.854 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.135 0.865 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.073 12.575 -10.629 16.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.015 4.015 4 C -0.030 4.030 5 N -0.194 5.194 6 C -0.441 4.441 7 H 0.101 0.899 8 C -0.169 4.169 9 N -0.542 5.542 10 Si 0.751 3.249 11 H -0.191 1.191 12 H -0.215 1.215 13 H -0.196 1.196 14 C 0.275 3.725 15 O -0.495 6.495 16 C -0.078 4.078 17 C -0.181 4.181 18 C -0.065 4.065 19 N -0.187 5.187 20 H 0.271 0.729 21 C -0.022 4.022 22 C -0.156 4.156 23 C -0.079 4.079 24 C -0.160 4.160 25 C -0.172 4.172 26 C -0.110 4.110 27 C -0.130 4.130 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.084 0.916 36 H 0.116 0.884 37 H 0.103 0.897 38 H 0.211 0.789 39 H 0.164 0.836 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.091 0.909 43 H 0.153 0.847 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -0.052 12.867 -10.562 16.646 hybrid contribution -0.163 -0.058 0.958 0.973 sum -0.215 12.808 -9.604 16.010 Atomic orbital electron populations 1.22865 0.80521 1.03142 1.00413 1.88162 1.20571 1.27387 1.95326 1.22785 0.93127 0.85144 1.00476 1.21798 0.94253 0.98528 0.88468 1.43763 1.59130 1.06455 1.10094 1.18785 1.41059 0.79855 1.04423 0.89919 1.25696 0.96466 0.95440 0.99285 1.69772 1.44037 1.07758 1.32611 0.86199 0.79068 0.78953 0.80693 1.19074 1.21544 1.19571 1.20981 0.77973 0.86386 0.87115 1.90516 1.57474 1.15469 1.86072 1.19571 1.03435 0.95606 0.89140 1.19965 0.93856 1.03063 1.01192 1.21850 0.99138 0.92239 0.93266 1.41535 1.08809 1.34672 1.33671 0.72928 1.18438 0.86240 0.99470 0.98046 1.20142 0.91653 1.00722 1.03120 1.19916 0.94846 0.97439 0.95685 1.20778 0.96392 0.97332 1.01541 1.20735 0.99690 0.97759 0.99055 1.20403 0.92308 0.99300 0.98941 1.19332 0.94608 0.99878 0.99154 0.92784 0.93805 0.89472 0.90788 0.93763 0.92208 0.89573 0.91604 0.88448 0.89695 0.78883 0.83588 0.90034 0.90392 0.90904 0.84684 0.87916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -16.66 10.18 -148.98 -1.52 -18.17 16 3 C 0.06 2.42 6.28 71.98 0.45 2.88 16 4 C 0.09 4.17 4.59 86.38 0.40 4.56 16 5 N -0.47 -23.22 2.14 -635.55 -1.36 -24.58 16 6 C -0.31 -16.73 8.64 84.04 0.73 -16.00 16 7 H 0.08 4.66 7.18 -2.91 -0.02 4.64 16 8 C 0.03 1.86 5.39 84.93 0.46 2.32 16 9 N -0.90 -51.84 13.96 21.66 0.30 -51.54 16 10 Si 0.92 44.06 24.75 68.60 1.70 45.76 16 11 H -0.26 -12.01 6.77 99.48 0.67 -11.33 16 12 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 13 H -0.27 -13.12 7.05 99.48 0.70 -12.42 16 14 C 0.48 23.02 7.61 87.66 0.67 23.68 16 15 O -0.61 -31.06 15.60 -3.08 -0.05 -31.11 16 16 C -0.04 -1.54 4.95 29.10 0.14 -1.39 16 17 C -0.17 -6.45 4.82 -18.62 -0.09 -6.54 16 18 C 0.06 1.80 11.73 83.00 0.97 2.78 16 19 N -0.58 -14.63 6.07 -187.61 -1.14 -15.76 16 20 H 0.43 7.06 8.96 -92.71 -0.83 6.22 16 21 C 0.09 2.60 7.28 39.03 0.28 2.88 16 22 C -0.14 -3.40 9.71 22.37 0.22 -3.18 16 23 C -0.08 -1.91 5.88 -19.84 -0.12 -2.03 16 24 C -0.10 -1.66 9.99 71.24 0.71 -0.95 16 25 C -0.15 -4.45 9.61 22.03 0.21 -4.24 16 26 C -0.09 -3.26 10.05 22.23 0.22 -3.04 16 27 C -0.13 -4.63 6.35 -20.20 -0.13 -4.76 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 2.49 8.14 -2.38 -0.02 2.47 16 31 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 33 H 0.06 2.80 3.13 -2.39 -0.01 2.79 16 34 H 0.09 3.78 7.35 -2.39 -0.02 3.76 16 35 H 0.27 14.81 8.31 -92.71 -0.77 14.04 16 36 H 0.10 3.76 7.59 -2.39 -0.02 3.74 16 37 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 38 H 0.19 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 42 H 0.07 1.07 8.08 -2.38 -0.02 1.05 16 43 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 44 H 0.10 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -72.44 365.41 4.46 -67.97 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.15 Total: 28.40 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: 6.38 Total: -0.97 kcal Atomic # 7 Polarization: -89.68 SS G_CDS: -2.20 Total: -91.88 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -1.56 Total: -49.28 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.70 Total: 45.76 kcal Total: -72.44 4.46 -67.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837234565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.779 kcal (2) G-P(sol) polarization free energy of solvation -72.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds