Wall clock time and date at job start Tue Mar 31 2020 10:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86802 * 120.00142 * 2 1 4 4 H 1.48495 * 109.47000 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46978 * 300.00590 * 3 2 1 6 6 H 1.48500 * 109.46389 * 60.00213 * 3 2 1 7 7 C 1.38651 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99689 * 179.97438 * 7 2 1 9 9 O 1.34830 * 120.00233 * 359.97438 * 7 2 1 10 10 C 1.35747 * 117.00003 * 174.96815 * 9 7 2 11 11 C 1.38959 * 120.03530 * 5.36279 * 10 9 7 12 12 C 1.38119 * 120.06921 * 179.97438 * 11 10 9 13 13 C 1.38211 * 120.14147 * 359.79273 * 12 11 10 14 14 C 1.38917 * 120.06509 * 0.46352 * 13 12 11 15 15 N 1.39942 * 120.03459 * 179.79184 * 14 13 12 16 16 C 1.34774 * 119.99640 * 214.84549 * 15 14 13 17 17 O 1.21584 * 120.00390 * 355.49862 * 16 15 14 18 18 N 1.34780 * 119.99669 * 175.49038 * 16 15 14 19 19 C 1.46508 * 119.99693 * 180.02562 * 18 16 15 20 20 H 1.09004 * 109.26646 * 325.49876 * 19 18 16 21 21 C 1.52874 * 109.26600 * 85.00429 * 19 18 16 22 22 C 1.53297 * 108.58935 * 65.37749 * 21 19 18 23 23 C 1.52874 * 108.58271 * 74.44289 * 22 21 19 24 24 C 1.52706 * 110.15192 * 305.47180 * 23 22 21 25 25 H 1.08996 * 115.39638 * 232.82840 * 24 23 22 26 26 C 1.53657 * 116.02609 * 90.20559 * 24 23 22 27 27 C 1.49177 * 60.26538 * 248.70343 * 26 24 23 28 28 H 1.08998 * 114.68630 * 252.71948 * 27 26 24 29 29 C 1.38735 * 120.03313 * 185.34247 * 10 9 7 30 30 H 0.96997 * 120.00101 * 359.97438 * 1 2 3 31 31 H 1.07993 * 119.95985 * 359.97438 * 11 10 9 32 32 H 1.08000 * 119.93071 * 179.97438 * 12 11 10 33 33 H 1.07998 * 119.96718 * 180.23279 * 13 12 11 34 34 H 0.96994 * 120.00309 * 34.84934 * 15 14 13 35 35 H 0.96997 * 120.00142 * 0.02562 * 18 16 15 36 36 H 1.09000 * 109.61721 * 305.64463 * 21 19 18 37 37 H 1.08998 * 109.61465 * 185.10641 * 21 19 18 38 38 H 1.09003 * 109.61997 * 314.71194 * 22 21 19 39 39 H 1.09008 * 109.76806 * 194.26352 * 22 21 19 40 40 H 1.09006 * 109.35825 * 185.26870 * 23 22 21 41 41 H 1.08999 * 109.35966 * 65.68743 * 23 22 21 42 42 H 1.08999 * 117.53768 * 356.55603 * 26 24 23 43 43 H 1.09004 * 117.53689 * 141.80623 * 26 24 23 44 44 H 1.07993 * 120.07129 * 0.04108 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.7095 1.3463 -0.0006 5 1 1.8907 2.3965 -1.2124 6 1 1.8908 2.3963 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3684 -0.0005 10 6 2.0699 -3.5046 -0.1072 11 6 3.4579 -3.4382 -0.0977 12 6 4.2066 -4.5938 -0.2056 13 6 3.5786 -5.8197 -0.3190 14 6 2.1914 -5.8922 -0.3344 15 7 1.5561 -7.1334 -0.4536 16 6 0.4008 -7.2359 -1.1401 17 8 -0.1320 -6.2381 -1.5860 18 7 -0.1637 -8.4446 -1.3325 19 6 -1.4192 -8.5560 -2.0793 20 1 -2.0372 -7.6812 -1.8766 21 6 -1.1121 -8.6211 -3.5755 22 6 -0.3481 -9.9190 -3.8615 23 6 -1.3311 -11.0879 -3.7947 24 6 -2.0654 -11.0818 -2.4558 25 1 -2.0323 -12.0190 -1.9003 26 6 -3.3784 -10.2849 -2.4105 27 6 -2.1910 -9.7985 -1.6496 28 1 -2.2621 -9.9198 -0.5687 29 6 1.4363 -4.7331 -0.2252 30 1 -0.4850 0.8400 0.0004 31 1 3.9515 -2.4821 -0.0059 32 1 5.2853 -4.5396 -0.1985 33 1 4.1668 -6.7219 -0.3994 34 1 1.9471 -7.9199 -0.0421 35 1 0.2612 -9.2405 -0.9766 36 1 -0.5001 -7.7656 -3.8610 37 1 -2.0439 -8.6128 -4.1409 38 1 0.4341 -10.0554 -3.1146 39 1 0.0985 -9.8726 -4.8548 40 1 -0.7857 -12.0254 -3.9033 41 1 -2.0552 -10.9977 -4.6044 42 1 -3.6659 -9.7359 -3.3072 43 1 -4.2009 -10.7014 -1.8290 44 1 0.3578 -4.7873 -0.2332 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838776872.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:49:31 Heat of formation + Delta-G solvation = -28.803337 kcal Electronic energy + Delta-G solvation = -25797.016106 eV Core-core repulsion = 22100.732947 eV Total energy + Delta-G solvation = -3696.283159 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90731 -40.85796 -40.10186 -38.24935 -35.60031 -35.51850 -34.25247 -33.74581 -31.31796 -30.70396 -29.44201 -27.32304 -25.71444 -23.91969 -23.66126 -23.05982 -22.08284 -21.89803 -20.11663 -19.73808 -19.39680 -18.78606 -17.48500 -17.09106 -16.77424 -16.64802 -16.24138 -16.01952 -15.70466 -15.60907 -15.42580 -15.04738 -14.80035 -14.38150 -14.31783 -14.22523 -13.64822 -13.59184 -13.30615 -13.15922 -12.92765 -12.70313 -12.39153 -12.35874 -12.12470 -12.08022 -11.90245 -11.63023 -11.42248 -11.30624 -10.98433 -10.89320 -10.76719 -10.57445 -10.13834 -9.28861 -8.83456 -8.45600 -6.15230 0.49296 0.73107 1.34294 1.44086 1.49233 1.54712 2.05680 2.18991 2.79194 2.85262 3.13232 3.19743 3.57854 3.60132 3.77581 3.94512 4.03926 4.15517 4.17679 4.25425 4.38506 4.39610 4.45049 4.56363 4.64871 4.71542 4.77384 4.80413 4.85397 4.93704 5.06393 5.07184 5.12765 5.15279 5.28563 5.31345 5.31898 5.41284 5.44363 5.50149 5.54006 5.66475 5.76735 6.00087 6.05347 6.24273 6.98014 7.02075 7.51161 7.82001 8.78727 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.020944 B = 0.002699 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.550963 B =10370.579615 C =11214.191031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.029 4.029 3 Si 1.025 2.975 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.107 0.893 9 O -0.237 6.237 10 C 0.126 3.874 11 C -0.257 4.257 12 C -0.048 4.048 13 C -0.204 4.204 14 C 0.202 3.798 15 N -0.665 5.665 16 C 0.695 3.305 17 O -0.618 6.618 18 N -0.710 5.710 19 C 0.195 3.805 20 H 0.054 0.946 21 C -0.133 4.133 22 C -0.112 4.112 23 C -0.086 4.086 24 C -0.134 4.134 25 H 0.123 0.877 26 C -0.168 4.168 27 C -0.158 4.158 28 H 0.107 0.893 29 C -0.214 4.214 30 H 0.272 0.728 31 H 0.123 0.877 32 H 0.161 0.839 33 H 0.165 0.835 34 H 0.427 0.573 35 H 0.414 0.586 36 H 0.038 0.962 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.108 0.892 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.687 -26.854 -4.155 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.226 4.226 3 Si 0.843 3.157 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.124 0.876 9 O -0.144 6.144 10 C 0.075 3.925 11 C -0.276 4.276 12 C -0.066 4.066 13 C -0.225 4.225 14 C 0.107 3.893 15 N -0.314 5.314 16 C 0.395 3.605 17 O -0.497 6.497 18 N -0.367 5.367 19 C 0.090 3.910 20 H 0.072 0.928 21 C -0.171 4.171 22 C -0.149 4.149 23 C -0.124 4.124 24 C -0.152 4.152 25 H 0.141 0.859 26 C -0.205 4.205 27 C -0.177 4.177 28 H 0.126 0.874 29 C -0.236 4.236 30 H 0.081 0.919 31 H 0.141 0.859 32 H 0.178 0.822 33 H 0.182 0.818 34 H 0.267 0.733 35 H 0.251 0.749 36 H 0.056 0.944 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.126 0.874 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.746 -25.877 -4.554 26.333 hybrid contribution -0.063 0.759 0.424 0.872 sum 1.683 -25.118 -4.131 25.511 Atomic orbital electron populations 1.70239 1.08318 1.28676 1.49211 1.26735 0.96881 1.03068 0.95902 0.84456 0.78368 0.74372 0.78477 1.16921 1.19542 1.19226 1.21963 0.92699 0.81268 1.52902 0.87573 1.83959 1.36293 1.12745 1.81402 1.19682 0.91752 0.87352 0.93688 1.21321 0.92409 1.00797 1.13109 1.21029 1.00555 0.90334 0.94719 1.20863 0.90798 0.99482 1.11330 1.17085 0.91453 0.83296 0.97497 1.42212 1.23846 1.09672 1.55702 1.16207 0.80905 0.84326 0.79032 1.91015 1.64495 1.37468 1.56707 1.44791 1.26042 1.06312 1.59508 1.19904 0.83219 0.97143 0.90750 0.92820 1.21974 1.01173 0.98582 0.95403 1.21493 0.98083 0.93437 1.01913 1.21067 0.97755 0.98629 0.94909 1.22338 0.99367 0.94998 0.98488 0.85917 1.22716 0.92028 1.03231 1.02551 1.21379 1.02650 0.94204 0.99427 0.87445 1.20204 0.99608 0.90743 1.13057 0.91943 0.85922 0.82154 0.81782 0.73327 0.74854 0.94353 0.90495 0.91374 0.91613 0.89715 0.91330 0.88867 0.87357 0.88324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -60.49 13.67 21.61 0.30 -60.20 16 2 C -0.03 -1.76 5.49 84.83 0.47 -1.29 16 3 Si 1.02 44.83 29.55 68.60 2.03 46.85 16 4 H -0.25 -9.76 7.11 99.48 0.71 -9.06 16 5 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.41 -25.41 9.49 67.92 0.64 -24.76 16 8 H 0.11 5.90 5.20 -2.91 -0.02 5.89 16 9 O -0.24 -15.59 9.75 -22.71 -0.22 -15.81 16 10 C 0.13 6.91 6.64 22.56 0.15 7.06 16 11 C -0.26 -11.57 9.17 22.41 0.21 -11.36 16 12 C -0.05 -1.60 10.03 22.24 0.22 -1.38 16 13 C -0.20 -6.17 9.96 22.43 0.22 -5.95 16 14 C 0.20 7.51 6.30 38.13 0.24 7.75 16 15 N -0.66 -18.57 5.34 -317.23 -1.69 -20.27 16 16 C 0.69 22.55 8.37 179.05 1.50 24.04 16 17 O -0.62 -28.36 13.43 -3.98 -0.05 -28.41 16 18 N -0.71 -15.35 4.35 -458.87 -2.00 -17.35 16 19 C 0.20 4.34 2.69 44.77 0.12 4.46 16 20 H 0.05 1.62 7.55 -2.38 -0.02 1.60 16 21 C -0.13 -2.84 5.34 30.65 0.16 -2.68 16 22 C -0.11 -1.65 5.91 30.65 0.18 -1.47 16 23 C -0.09 -0.91 5.83 30.45 0.18 -0.73 16 24 C -0.13 -1.41 6.29 -10.98 -0.07 -1.48 16 25 H 0.12 0.90 8.14 -2.39 -0.02 0.89 16 26 C -0.17 -2.12 9.55 29.60 0.28 -1.84 16 27 C -0.16 -2.36 5.37 -12.50 -0.07 -2.43 16 28 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 29 C -0.21 -10.76 8.64 22.51 0.19 -10.57 16 30 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 31 H 0.12 5.53 5.63 -2.91 -0.02 5.51 16 32 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 34 H 0.43 7.22 8.84 -92.71 -0.82 6.40 16 35 H 0.41 5.51 8.50 -92.71 -0.79 4.73 16 36 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 1.52 7.13 -2.39 -0.02 1.51 16 38 H 0.07 0.96 7.23 -2.39 -0.02 0.94 16 39 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.07 0.73 8.06 -2.39 -0.02 0.71 16 42 H 0.09 1.28 7.30 -2.39 -0.02 1.27 16 43 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.10 5.62 6.22 -2.91 -0.02 5.61 16 Total: -1.00 -87.71 357.41 2.43 -85.28 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: -0.56 Total: 32.54 kcal Atomic # 6 Polarization: -27.27 SS G_CDS: 4.63 Total: -22.63 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -3.40 Total: -97.81 kcal Atomic # 8 Polarization: -43.95 SS G_CDS: -0.27 Total: -44.23 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -87.71 2.43 -85.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838776872.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.474 kcal (2) G-P(sol) polarization free energy of solvation -87.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds