Wall clock time and date at job start Tue Mar 31 2020 10:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00664 * 2 1 4 4 H 1.48497 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47112 * 300.00271 * 3 2 1 6 6 H 1.48503 * 109.47029 * 59.99960 * 3 2 1 7 7 C 1.38662 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00018 * 359.71765 * 7 2 1 10 10 C 1.35753 * 116.99840 * 174.90106 * 9 7 2 11 11 C 1.38896 * 120.06847 * 5.22604 * 10 9 7 12 12 C 1.38078 * 119.92941 * 179.75060 * 11 10 9 13 13 C 1.38321 * 120.07202 * 0.52792 * 12 11 10 14 14 C 1.38286 * 120.13497 * 359.74913 * 13 12 11 15 15 C 1.50695 * 119.96226 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46826 * 269.97337 * 15 14 13 17 17 O 1.21280 * 119.99853 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00166 * 180.02562 * 16 15 14 19 19 C 1.47245 * 121.71345 * 359.71997 * 18 16 15 20 20 C 1.53544 * 109.15315 * 131.39202 * 19 18 16 21 21 N 1.47454 * 109.70698 * 48.72259 * 20 19 18 22 22 C 1.48071 * 109.71682 * 48.84590 * 21 20 19 23 23 C 1.54093 * 106.82987 * 269.95089 * 22 21 20 24 24 C 1.48382 * 121.71787 * 179.97438 * 18 16 15 25 25 H 1.08992 * 114.03109 * 5.78773 * 24 18 16 26 26 C 1.48806 * 108.52866 * 294.30866 * 21 20 19 27 27 C 1.38118 * 120.06719 * 359.97438 * 14 13 12 28 28 H 0.97009 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.03677 * 0.02700 * 11 10 9 30 30 H 1.08005 * 119.96406 * 180.27834 * 12 11 10 31 31 H 1.07995 * 119.93331 * 179.76766 * 13 12 11 32 32 H 1.08996 * 109.48022 * 29.97355 * 15 14 13 33 33 H 1.09004 * 109.47019 * 149.97965 * 15 14 13 34 34 H 1.08993 * 109.47927 * 251.43409 * 19 18 16 35 35 H 1.08998 * 109.48167 * 11.48301 * 19 18 16 36 36 H 1.09002 * 109.58003 * 288.56886 * 20 19 18 37 37 H 1.09004 * 109.27638 * 168.68570 * 20 19 18 38 38 H 1.09002 * 109.99006 * 150.60939 * 22 21 20 39 39 H 1.08997 * 110.02145 * 29.31301 * 22 21 20 40 40 H 1.08995 * 110.42437 * 241.92595 * 23 22 21 41 41 H 1.08993 * 110.52641 * 119.50040 * 23 22 21 42 42 H 1.08992 * 110.98017 * 316.41359 * 26 21 20 43 43 H 1.09000 * 110.97862 * 192.62581 * 26 21 20 44 44 H 1.08004 * 120.03405 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 0.0047 10 6 2.0691 -3.5049 -0.1037 11 6 3.4566 -3.4392 -0.1041 12 6 4.2010 -4.5974 -0.2092 13 6 3.5665 -5.8210 -0.3251 14 6 2.1854 -5.8891 -0.3308 15 6 1.4982 -7.2244 -0.4566 16 6 1.2678 -7.5354 -1.9131 17 8 1.6268 -6.7503 -2.7650 18 7 0.6629 -8.6860 -2.2690 19 6 0.2174 -9.6685 -1.2668 20 6 -1.2303 -10.0787 -1.5723 21 7 -1.3584 -10.4248 -2.9999 22 6 -0.2752 -11.3574 -3.3869 23 6 0.9099 -10.4932 -3.8594 24 6 0.4165 -9.0303 -3.6911 25 1 0.8531 -8.3270 -4.4002 26 6 -1.1252 -9.1966 -3.8070 27 6 1.4351 -4.7348 -0.2202 28 1 -0.4850 0.8402 0.0004 29 1 3.9526 -2.4838 -0.0177 30 1 5.2799 -4.5474 -0.2051 31 1 4.1510 -6.7251 -0.4110 32 1 2.1249 -7.9988 -0.0145 33 1 0.5409 -7.1908 0.0635 34 1 0.8631 -10.5457 -1.3058 35 1 0.2684 -9.2230 -0.2733 36 1 -1.9013 -9.2522 -1.3381 37 1 -1.4951 -10.9439 -0.9644 38 1 -0.6118 -12.0035 -4.1977 39 1 0.0221 -11.9605 -2.5291 40 1 1.1381 -10.6997 -4.9050 41 1 1.7862 -10.6733 -3.2369 42 1 -1.6435 -8.3410 -3.3742 43 1 -1.4246 -9.3485 -4.8441 44 1 0.3565 -4.7886 -0.2243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000854729332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:52 Heat of formation + Delta-G solvation = -8.805774 kcal Electronic energy + Delta-G solvation = -26199.991258 eV Core-core repulsion = 22504.575258 eV Total energy + Delta-G solvation = -3695.416000 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30516 -39.27429 -38.40523 -36.39828 -34.22861 -32.63970 -32.26737 -31.76779 -29.50330 -29.17721 -27.80842 -26.46157 -25.18541 -23.90151 -22.03156 -21.51439 -21.11465 -20.54330 -19.00107 -17.58925 -17.38539 -16.90096 -16.53994 -15.70697 -15.45600 -15.06613 -15.00458 -14.74938 -14.36244 -14.15671 -13.93813 -13.60010 -13.30800 -13.28177 -13.10971 -12.89861 -12.51453 -12.35793 -11.94561 -11.79256 -11.69501 -11.63277 -11.48650 -11.30059 -11.24701 -11.20630 -10.81801 -10.72127 -10.57502 -10.39251 -9.77251 -9.46144 -9.28885 -8.79740 -8.41138 -8.02373 -7.17422 -6.39960 -3.98816 2.11194 2.42873 2.70961 2.81459 3.15347 3.17172 3.22458 3.63182 4.00539 4.23655 4.41100 4.48060 4.51791 4.64973 4.72498 4.84107 4.85281 4.97573 5.00758 5.16736 5.18298 5.21594 5.31950 5.40198 5.48572 5.49457 5.54820 5.59303 5.62875 5.66814 5.68936 5.78053 5.96557 6.21106 6.28985 6.37061 6.37952 6.53981 6.69777 6.95676 7.11845 7.30033 7.30527 7.41194 7.48443 7.86902 8.05331 8.24692 9.06005 9.76994 10.78480 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002747 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.178932 B =10191.267417 C =10703.346030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.180 6.180 10 C 0.155 3.845 11 C -0.230 4.230 12 C -0.075 4.075 13 C -0.197 4.197 14 C -0.033 4.033 15 C -0.091 4.091 16 C 0.520 3.480 17 O -0.516 6.516 18 N -0.623 5.623 19 C 0.074 3.926 20 C 0.022 3.978 21 N -0.500 5.500 22 C 0.028 3.972 23 C -0.162 4.162 24 C 0.109 3.891 25 H 0.124 0.876 26 C 0.020 3.980 27 C -0.174 4.174 28 H 0.268 0.732 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -22.913 -3.288 23.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.466 4.466 8 H 0.109 0.891 9 O -0.084 6.084 10 C 0.102 3.898 11 C -0.250 4.250 12 C -0.093 4.093 13 C -0.216 4.216 14 C -0.034 4.034 15 C -0.131 4.131 16 C 0.309 3.691 17 O -0.390 6.390 18 N -0.360 5.360 19 C -0.051 4.051 20 C -0.108 4.108 21 N -0.221 5.221 22 C -0.100 4.100 23 C -0.201 4.201 24 C 0.005 3.995 25 H 0.141 0.859 26 C -0.109 4.109 27 C -0.194 4.194 28 H 0.078 0.922 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.487 -22.489 -3.790 22.811 hybrid contribution 1.386 1.097 0.221 1.781 sum 0.899 -21.393 -3.569 21.707 Atomic orbital electron populations 1.70056 1.05933 1.27425 1.46546 1.25279 0.95841 0.98777 0.96678 0.85652 0.79140 0.80457 0.78199 1.19130 1.20170 1.20185 1.21364 0.91797 0.80844 1.52637 0.89085 1.83974 1.34307 1.11367 1.78739 1.19261 0.90251 0.87949 0.92358 1.21179 0.93842 0.98927 1.11009 1.20675 0.98364 0.92286 0.97962 1.20330 0.93267 0.96974 1.10986 1.18662 0.93237 0.91909 0.99598 1.20614 1.02300 0.97084 0.93110 1.20758 0.76652 0.80016 0.91713 1.90757 1.49205 1.46551 1.52447 1.48813 1.60743 1.19919 1.06530 1.22454 0.96532 0.93009 0.93076 1.22966 0.95151 1.02126 0.90536 1.66006 1.42288 1.10221 1.03549 1.23072 0.89774 0.96000 1.01160 1.23289 0.99303 0.94774 1.02771 1.23436 0.96357 0.95980 0.83765 0.85853 1.23897 0.94157 0.93156 0.99711 1.19925 0.99007 0.89952 1.10470 0.92162 0.85593 0.87484 0.88057 0.88596 0.88395 0.91222 0.88982 0.89813 0.89225 0.89900 0.90928 0.90156 0.90587 0.89542 0.88906 0.86908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.94 13.67 55.48 0.76 -25.18 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 21.08 29.55 -169.99 -5.02 16.05 16 4 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.25 9.49 30.89 0.29 -10.96 16 8 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 9 O -0.18 -5.33 9.76 0.06 0.00 -5.33 16 10 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 11 C -0.23 -5.29 9.17 -39.40 -0.36 -5.65 16 12 C -0.07 -1.46 10.04 -39.61 -0.40 -1.86 16 13 C -0.20 -3.63 9.70 -39.53 -0.38 -4.02 16 14 C -0.03 -0.63 4.37 -104.65 -0.46 -1.08 16 15 C -0.09 -1.26 4.24 -29.04 -0.12 -1.38 16 16 C 0.52 7.85 7.73 -10.98 -0.08 7.76 16 17 O -0.52 -10.32 15.73 5.56 0.09 -10.23 16 18 N -0.62 -6.99 2.70 -160.92 -0.43 -7.42 16 19 C 0.07 0.57 5.68 -3.35 -0.02 0.55 16 20 C 0.02 0.16 5.93 -3.24 -0.02 0.14 16 21 N -0.50 -4.22 5.97 -228.80 -1.37 -5.58 16 22 C 0.03 0.19 6.21 -2.61 -0.02 0.18 16 23 C -0.16 -1.25 5.96 -24.94 -0.15 -1.39 16 24 C 0.11 1.13 4.45 -64.34 -0.29 0.84 16 25 H 0.12 1.49 7.45 -51.93 -0.39 1.11 16 26 C 0.02 0.19 6.53 -1.44 -0.01 0.18 16 27 C -0.17 -3.89 9.65 -39.40 -0.38 -4.27 16 28 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.13 2.87 5.64 -52.49 -0.30 2.58 16 30 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 31 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 32 H 0.10 1.03 8.01 -51.93 -0.42 0.62 16 33 H 0.10 1.16 7.62 -51.93 -0.40 0.77 16 34 H 0.07 0.46 6.23 -51.93 -0.32 0.14 16 35 H 0.09 0.62 6.18 -51.93 -0.32 0.30 16 36 H 0.08 0.68 7.91 -51.93 -0.41 0.27 16 37 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.43 7.02 -51.93 -0.36 0.06 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 42 H 0.09 0.92 7.84 -51.93 -0.41 0.51 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.11 2.45 8.06 -52.48 -0.42 2.03 16 LS Contribution 351.61 15.07 5.30 5.30 Total: -1.00 -34.86 351.61 -9.50 -44.37 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -6.08 Total: 4.33 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: -2.75 Total: -16.31 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -1.04 Total: -38.18 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.09 Total: -15.56 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.86 -9.50 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854729332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.563 kcal (2) G-P(sol) polarization free energy of solvation -34.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds