Wall clock time and date at job start Tue Mar 31 2020 10:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86794 * 120.00664 * 2 1 4 4 H 1.48497 * 109.47445 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47112 * 300.00271 * 3 2 1 6 6 H 1.48503 * 109.47029 * 59.99960 * 3 2 1 7 7 C 1.38662 * 119.99316 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 180.02562 * 7 2 1 9 9 O 1.34823 * 120.00018 * 359.71765 * 7 2 1 10 10 C 1.35753 * 116.99840 * 174.90106 * 9 7 2 11 11 C 1.38896 * 120.06847 * 5.22604 * 10 9 7 12 12 C 1.38078 * 119.92941 * 179.75060 * 11 10 9 13 13 C 1.38321 * 120.07202 * 0.52792 * 12 11 10 14 14 C 1.38286 * 120.13497 * 359.74913 * 13 12 11 15 15 C 1.50695 * 119.96226 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46826 * 269.97337 * 15 14 13 17 17 O 1.21280 * 119.99853 * 0.02562 * 16 15 14 18 18 N 1.34776 * 120.00166 * 180.02562 * 16 15 14 19 19 C 1.47245 * 121.71345 * 359.71997 * 18 16 15 20 20 C 1.53544 * 109.15315 * 131.39202 * 19 18 16 21 21 N 1.47454 * 109.70698 * 48.72259 * 20 19 18 22 22 C 1.48071 * 109.71682 * 48.84590 * 21 20 19 23 23 C 1.54093 * 106.82987 * 269.95089 * 22 21 20 24 24 C 1.48382 * 121.71787 * 179.97438 * 18 16 15 25 25 H 1.08992 * 114.03109 * 5.78773 * 24 18 16 26 26 C 1.48806 * 108.52866 * 294.30866 * 21 20 19 27 27 C 1.38118 * 120.06719 * 359.97438 * 14 13 12 28 28 H 0.97009 * 119.99452 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.03677 * 0.02700 * 11 10 9 30 30 H 1.08005 * 119.96406 * 180.27834 * 12 11 10 31 31 H 1.07995 * 119.93331 * 179.76766 * 13 12 11 32 32 H 1.08996 * 109.48022 * 29.97355 * 15 14 13 33 33 H 1.09004 * 109.47019 * 149.97965 * 15 14 13 34 34 H 1.08993 * 109.47927 * 251.43409 * 19 18 16 35 35 H 1.08998 * 109.48167 * 11.48301 * 19 18 16 36 36 H 1.09002 * 109.58003 * 288.56886 * 20 19 18 37 37 H 1.09004 * 109.27638 * 168.68570 * 20 19 18 38 38 H 1.09002 * 109.99006 * 150.60939 * 22 21 20 39 39 H 1.08997 * 110.02145 * 29.31301 * 22 21 20 40 40 H 1.08995 * 110.42437 * 241.92595 * 23 22 21 41 41 H 1.08993 * 110.52641 * 119.50040 * 23 22 21 42 42 H 1.08992 * 110.98017 * 316.41359 * 26 21 20 43 43 H 1.09000 * 110.97862 * 192.62581 * 26 21 20 44 44 H 1.08004 * 120.03405 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.7097 1.3461 -0.0006 5 1 1.8910 2.3964 -1.2125 6 1 1.8910 2.3963 1.2125 7 6 2.0087 -1.2009 -0.0005 8 1 3.0887 -1.2010 -0.0001 9 8 1.3345 -2.3685 0.0047 10 6 2.0691 -3.5049 -0.1037 11 6 3.4566 -3.4392 -0.1041 12 6 4.2010 -4.5974 -0.2092 13 6 3.5665 -5.8210 -0.3251 14 6 2.1854 -5.8891 -0.3308 15 6 1.4982 -7.2244 -0.4566 16 6 1.2678 -7.5354 -1.9131 17 8 1.6268 -6.7503 -2.7650 18 7 0.6629 -8.6860 -2.2690 19 6 0.2174 -9.6685 -1.2668 20 6 -1.2303 -10.0787 -1.5723 21 7 -1.3584 -10.4248 -2.9999 22 6 -0.2752 -11.3574 -3.3869 23 6 0.9099 -10.4932 -3.8594 24 6 0.4165 -9.0303 -3.6911 25 1 0.8531 -8.3270 -4.4002 26 6 -1.1252 -9.1966 -3.8070 27 6 1.4351 -4.7348 -0.2202 28 1 -0.4850 0.8402 0.0004 29 1 3.9526 -2.4838 -0.0177 30 1 5.2799 -4.5474 -0.2051 31 1 4.1510 -6.7251 -0.4110 32 1 2.1249 -7.9988 -0.0145 33 1 0.5409 -7.1908 0.0635 34 1 0.8631 -10.5457 -1.3058 35 1 0.2684 -9.2230 -0.2733 36 1 -1.9013 -9.2522 -1.3381 37 1 -1.4951 -10.9439 -0.9644 38 1 -0.6118 -12.0035 -4.1977 39 1 0.0221 -11.9605 -2.5291 40 1 1.1381 -10.6997 -4.9050 41 1 1.7862 -10.6733 -3.2369 42 1 -1.6435 -8.3410 -3.3742 43 1 -1.4246 -9.3485 -4.8441 44 1 0.3565 -4.7886 -0.2243 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000854729332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:51 Heat of formation + Delta-G solvation = -33.804565 kcal Electronic energy + Delta-G solvation = -26201.075287 eV Core-core repulsion = 22504.575258 eV Total energy + Delta-G solvation = -3696.500028 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.12013 -40.86285 -39.76700 -38.14131 -35.18152 -34.35411 -33.57588 -32.92060 -30.92435 -30.14711 -29.00797 -27.62251 -27.11820 -24.59881 -23.42704 -23.07617 -21.93061 -21.70348 -20.00568 -19.41036 -18.74197 -18.39767 -17.31404 -16.81370 -16.74192 -16.44640 -16.18135 -16.02295 -15.75085 -15.51017 -15.27430 -15.12392 -14.64722 -14.35702 -14.14312 -13.95904 -13.83473 -13.62465 -13.45542 -13.01026 -12.89815 -12.62329 -12.54825 -12.40999 -12.34000 -12.27091 -12.21738 -12.09620 -11.94929 -11.78033 -11.22643 -10.95931 -10.81185 -10.30536 -9.66106 -9.18675 -9.00021 -8.48724 -6.17324 0.48775 0.73027 1.32714 1.41703 1.51722 1.58313 1.87229 2.16330 2.80878 2.99464 3.11972 3.41484 3.53954 3.68702 3.76038 3.87793 3.90372 4.03714 4.07574 4.10804 4.22815 4.28200 4.36505 4.41450 4.51737 4.54919 4.57807 4.68442 4.70867 4.72603 4.81943 4.86525 4.96069 4.99986 5.04442 5.10297 5.11271 5.27511 5.47136 5.62422 5.70204 5.72397 5.72711 5.94408 6.01209 6.19452 6.35593 6.95894 7.14622 7.77200 8.75160 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.023841 B = 0.002747 C = 0.002615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.178932 B =10191.267417 C =10703.346030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.252 1.252 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.414 4.414 8 H 0.100 0.900 9 O -0.235 6.235 10 C 0.113 3.887 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.181 4.181 14 C -0.026 4.026 15 C -0.088 4.088 16 C 0.516 3.484 17 O -0.580 6.580 18 N -0.614 5.614 19 C 0.068 3.932 20 C 0.021 3.979 21 N -0.507 5.507 22 C 0.032 3.968 23 C -0.150 4.150 24 C 0.096 3.904 25 H 0.097 0.903 26 C 0.024 3.976 27 C -0.193 4.193 28 H 0.273 0.727 29 H 0.118 0.882 30 H 0.146 0.854 31 H 0.146 0.854 32 H 0.141 0.859 33 H 0.118 0.882 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.065 0.935 43 H 0.101 0.899 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.248 -26.450 -2.732 26.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.175 1.175 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.490 4.490 8 H 0.118 0.882 9 O -0.142 6.142 10 C 0.063 3.937 11 C -0.265 4.265 12 C -0.091 4.091 13 C -0.199 4.199 14 C -0.026 4.026 15 C -0.127 4.127 16 C 0.306 3.694 17 O -0.459 6.459 18 N -0.348 5.348 19 C -0.055 4.055 20 C -0.108 4.108 21 N -0.228 5.228 22 C -0.096 4.096 23 C -0.190 4.190 24 C -0.008 4.008 25 H 0.115 0.885 26 C -0.105 4.105 27 C -0.212 4.212 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.164 0.836 31 H 0.164 0.836 32 H 0.159 0.841 33 H 0.136 0.864 34 H 0.112 0.888 35 H 0.126 0.874 36 H 0.089 0.911 37 H 0.134 0.866 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.084 0.916 43 H 0.119 0.881 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 1.448 -26.138 -3.217 26.375 hybrid contribution 0.816 1.808 0.003 1.984 sum 2.264 -24.330 -3.214 24.646 Atomic orbital electron populations 1.70201 1.08049 1.28709 1.49088 1.26629 0.96908 1.02771 0.95864 0.84509 0.78188 0.74695 0.78651 1.17507 1.19419 1.18959 1.21867 0.92498 0.81481 1.53171 0.88234 1.83934 1.35998 1.12560 1.81661 1.19853 0.91682 0.87872 0.94284 1.21302 0.93103 1.00212 1.11928 1.21135 1.00257 0.91409 0.96252 1.20949 0.93423 0.98178 1.07344 1.19180 0.93807 0.92954 0.96694 1.20713 1.03830 0.95242 0.92899 1.20940 0.76483 0.80384 0.91594 1.90742 1.52430 1.48781 1.53966 1.48861 1.58910 1.19249 1.07783 1.22783 0.97040 0.92947 0.92720 1.23040 0.94674 1.02802 0.90288 1.66018 1.43164 1.09655 1.03978 1.23132 0.88674 0.95514 1.02276 1.23221 0.99660 0.92475 1.03605 1.23522 0.97155 0.97225 0.82921 0.88532 1.23809 0.93150 0.93191 1.00374 1.20188 0.99145 0.90526 1.11386 0.91839 0.86386 0.83609 0.83631 0.84099 0.86390 0.88820 0.87378 0.91107 0.86643 0.89024 0.89023 0.89224 0.90324 0.91638 0.88081 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.59 13.67 21.62 0.30 -58.29 16 2 C -0.02 -1.46 5.49 84.84 0.47 -0.99 16 3 Si 1.02 44.56 29.55 68.60 2.03 46.59 16 4 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 5 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.41 -25.32 9.49 67.92 0.64 -24.68 16 8 H 0.10 5.62 5.20 -2.91 -0.02 5.61 16 9 O -0.23 -14.95 9.76 -22.70 -0.22 -15.17 16 10 C 0.11 6.06 6.65 22.58 0.15 6.21 16 11 C -0.25 -11.56 9.17 22.39 0.21 -11.35 16 12 C -0.07 -2.70 10.04 22.25 0.22 -2.47 16 13 C -0.18 -6.08 9.70 22.30 0.22 -5.86 16 14 C -0.03 -0.93 4.37 -19.88 -0.09 -1.01 16 15 C -0.09 -2.14 4.24 29.10 0.12 -2.02 16 16 C 0.52 14.87 7.73 87.66 0.68 15.54 16 17 O -0.58 -23.51 15.73 -3.03 -0.05 -23.56 16 18 N -0.61 -12.54 2.70 -781.41 -2.11 -14.65 16 19 C 0.07 0.79 5.68 86.42 0.49 1.28 16 20 C 0.02 0.25 5.93 86.38 0.51 0.76 16 21 N -0.51 -7.29 5.97 -877.80 -5.24 -12.53 16 22 C 0.03 0.32 6.21 86.45 0.54 0.86 16 23 C -0.15 -1.90 5.96 31.75 0.19 -1.71 16 24 C 0.10 1.91 4.45 46.28 0.21 2.11 16 25 H 0.10 2.44 7.45 -2.39 -0.02 2.43 16 26 C 0.02 0.43 6.53 86.80 0.57 1.00 16 27 C -0.19 -8.94 9.65 22.39 0.22 -8.73 16 28 H 0.27 15.77 8.31 -92.70 -0.77 14.99 16 29 H 0.12 5.59 5.64 -2.91 -0.02 5.57 16 30 H 0.15 4.25 8.06 -2.91 -0.02 4.22 16 31 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.14 2.22 8.01 -2.39 -0.02 2.20 16 33 H 0.12 2.45 7.62 -2.38 -0.02 2.44 16 34 H 0.09 0.74 6.23 -2.39 -0.01 0.72 16 35 H 0.11 0.94 6.18 -2.39 -0.01 0.93 16 36 H 0.07 1.03 7.91 -2.39 -0.02 1.01 16 37 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 38 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.62 7.02 -2.39 -0.02 0.60 16 40 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.98 7.48 -2.39 -0.02 0.97 16 42 H 0.07 1.44 7.84 -2.39 -0.02 1.42 16 43 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 Total: -1.00 -84.28 351.61 1.06 -83.22 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.01 Total: 25.44 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 5.34 Total: -31.06 kcal Atomic # 7 Polarization: -78.42 SS G_CDS: -7.05 Total: -85.47 kcal Atomic # 8 Polarization: -38.46 SS G_CDS: -0.27 Total: -38.73 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -84.28 1.06 -83.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000854729332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.413 kcal (2) G-P(sol) polarization free energy of solvation -84.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds