Wall clock time and date at job start Tue Mar 31 2020 12:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50712 * 1 3 3 C 1.38350 * 119.85080 * 2 1 4 4 C 1.37951 * 120.15119 * 180.23619 * 3 2 1 5 5 C 1.39611 * 119.84624 * 359.51166 * 4 3 2 6 6 C 1.47642 * 120.15288 * 180.27952 * 5 4 3 7 7 N 1.29089 * 125.86091 * 0.02562 * 6 5 4 8 8 O 1.41396 * 112.86880 * 179.64660 * 7 6 5 9 9 C 1.44200 * 107.59871 * 17.49646 * 8 7 6 10 10 H 1.08999 * 110.97355 * 216.48246 * 9 8 7 11 11 C 1.50700 * 110.97382 * 92.74550 * 9 8 7 12 12 O 1.21278 * 120.00285 * 356.45469 * 11 9 8 13 13 N 1.34781 * 119.99978 * 176.45301 * 11 9 8 14 14 C 1.46499 * 120.00126 * 179.97438 * 13 11 9 15 15 C 1.52999 * 109.47195 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.46967 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47013 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99997 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99949 * 179.97438 * 17 16 15 20 20 N 1.31508 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99700 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47444 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47117 * 119.99953 * 21 19 17 24 24 H 1.48502 * 109.47076 * 239.99836 * 21 19 17 25 25 C 1.51687 * 125.86859 * 179.71824 * 6 5 4 26 26 C 1.39620 * 119.70276 * 0.25173 * 5 4 3 27 27 C 1.37948 * 119.84478 * 0.02562 * 26 5 4 28 28 H 1.08998 * 109.46465 * 270.23459 * 1 2 3 29 29 H 1.08997 * 109.46995 * 30.22644 * 1 2 3 30 30 H 1.08996 * 109.47057 * 150.22997 * 1 2 3 31 31 H 1.08004 * 119.92892 * 0.02562 * 3 2 1 32 32 H 1.08002 * 120.08138 * 179.79375 * 4 3 2 33 33 H 0.97004 * 119.99915 * 0.02562 * 13 11 9 34 34 H 1.09001 * 109.46962 * 300.00067 * 14 13 11 35 35 H 1.09001 * 109.46747 * 60.00119 * 14 13 11 36 36 H 1.09006 * 109.46730 * 300.00170 * 15 14 13 37 37 H 1.09004 * 109.47251 * 59.99718 * 15 14 13 38 38 H 1.09006 * 109.47337 * 299.99557 * 16 15 14 39 39 H 1.08995 * 109.47713 * 59.99901 * 16 15 14 40 40 H 0.97004 * 119.99817 * 180.02562 * 20 19 17 41 41 H 1.09003 * 110.78870 * 282.90067 * 25 6 5 42 42 H 1.08996 * 110.79633 * 46.37627 * 25 6 5 43 43 H 1.07999 * 120.07559 * 180.02562 * 26 5 4 44 44 H 1.08006 * 119.92650 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5752 1.2072 -0.0049 5 6 4.2764 -0.0001 0.0004 6 6 5.7528 -0.0002 0.0014 7 7 6.5091 1.0459 -0.0018 8 8 7.8868 0.7280 0.0083 9 6 8.0192 -0.6503 -0.3943 10 1 8.8234 -1.1413 0.1536 11 6 8.2383 -0.7593 -1.8813 12 8 8.2176 0.2374 -2.5719 13 7 8.4572 -1.9644 -2.4437 14 6 8.6696 -2.0705 -3.8893 15 6 8.8927 -3.5365 -4.2658 16 6 9.1152 -3.6471 -5.7755 17 6 9.3356 -5.0911 -6.1463 18 1 9.3182 -5.8537 -5.3817 19 6 9.5583 -5.4388 -7.4618 20 7 9.5789 -4.5102 -8.3929 21 14 9.8307 -7.2287 -7.9215 22 1 9.7591 -8.0699 -6.6999 23 1 8.7815 -7.6588 -8.8802 24 1 11.1677 -7.3804 -8.5499 25 6 6.6415 -1.2294 0.0130 26 6 3.5752 -1.2074 0.0054 27 6 2.1957 -1.2000 0.0044 28 1 -0.3632 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5173 30 1 -0.3633 -0.8920 -0.5102 31 1 1.6521 2.1332 0.0004 32 1 4.1117 2.1446 -0.0083 33 1 8.4733 -2.7617 -1.8913 34 1 7.7932 -1.6902 -4.4141 35 1 9.5447 -1.4852 -4.1718 36 1 9.7690 -3.9171 -3.7409 37 1 8.0174 -4.1215 -3.9833 38 1 8.2392 -3.2664 -6.3007 39 1 9.9906 -3.0623 -6.0576 40 1 9.7353 -4.7549 -9.3184 41 1 6.6831 -1.6674 1.0104 42 1 6.2990 -1.9615 -0.7183 43 1 4.1115 -2.1448 0.0099 44 1 1.6519 -2.1332 0.0079 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888815801.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:08 Heat of formation + Delta-G solvation = -11.345026 kcal Electronic energy + Delta-G solvation = -24806.367078 eV Core-core repulsion = 21110.840968 eV Total energy + Delta-G solvation = -3695.526110 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 316.157 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00699 -39.64379 -38.62511 -35.50566 -34.48287 -33.44324 -31.99118 -31.89765 -31.38929 -30.56602 -27.46141 -26.95462 -24.89964 -23.12722 -22.68353 -22.58321 -20.85916 -20.42983 -19.94613 -17.79795 -17.42739 -16.44815 -16.11107 -15.87794 -15.74214 -15.46119 -15.21063 -14.90083 -14.51539 -14.26100 -14.19055 -13.97748 -13.86117 -13.44509 -13.37675 -12.80304 -12.68444 -12.38855 -12.32960 -12.25178 -11.89036 -11.76416 -11.68945 -11.51036 -10.98687 -10.95622 -10.81833 -10.66087 -10.58245 -9.93309 -9.76619 -9.37878 -9.36173 -9.14482 -8.91491 -8.70284 -8.41340 -6.05460 -4.08883 0.34690 1.01328 1.89157 2.40349 2.82953 3.12085 3.27176 3.34848 3.37947 3.41263 3.60882 4.04425 4.10693 4.40580 4.43833 4.46021 4.53178 4.59512 4.75334 4.90650 4.97300 5.03345 5.09228 5.17358 5.23519 5.30424 5.34519 5.43204 5.62755 5.63563 5.67785 5.69843 6.00778 6.03138 6.08315 6.16979 6.35108 6.51962 6.52219 6.73247 6.93268 7.04930 7.53028 7.59298 7.70957 7.92860 8.20904 8.33720 8.97958 9.55574 11.05846 Molecular weight = 316.16amu Principal moments of inertia in cm(-1) A = 0.013431 B = 0.002368 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.267641 B =11823.694643 C =13233.357750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.124 4.124 4 C -0.074 4.074 5 C -0.047 4.047 6 C 0.122 3.878 7 N -0.272 5.272 8 O -0.164 6.164 9 C 0.024 3.976 10 H 0.141 0.859 11 C 0.490 3.510 12 O -0.517 6.517 13 N -0.721 5.721 14 C 0.116 3.884 15 C -0.120 4.120 16 C 0.023 3.977 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.138 4.138 26 C -0.081 4.081 27 C -0.123 4.123 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.129 0.871 32 H 0.133 0.867 33 H 0.399 0.601 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 41 H 0.117 0.883 42 H 0.110 0.890 43 H 0.131 0.869 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.904 6.208 22.876 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.142 4.142 4 C -0.094 4.094 5 C -0.048 4.048 6 C -0.068 4.068 7 N -0.012 5.012 8 O -0.182 6.182 9 C -0.038 4.038 10 H 0.159 0.841 11 C 0.274 3.726 12 O -0.392 6.392 13 N -0.374 5.374 14 C -0.006 4.006 15 C -0.158 4.158 16 C -0.015 4.015 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.178 4.178 26 C -0.101 4.101 27 C -0.141 4.141 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.147 0.853 32 H 0.151 0.849 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.149 0.851 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -15.589 8.223 22.217 28.359 hybrid contribution 0.448 -2.330 -0.256 2.387 sum -15.141 5.893 21.961 27.317 Atomic orbital electron populations 1.20866 0.90819 1.03251 1.02605 1.20154 0.96459 0.93145 0.97070 1.21015 0.93712 0.97964 1.01495 1.21355 0.94218 0.97583 0.96209 1.17754 0.86981 0.94494 1.05572 1.24240 0.94337 0.92490 0.95732 1.78442 0.88942 1.21847 1.11976 1.91337 1.15825 1.25494 1.85578 1.23695 0.99804 0.85926 0.94405 0.84130 1.20703 0.78035 0.84245 0.89640 1.90767 1.49055 1.36082 1.63258 1.46165 1.72496 1.08178 1.10513 1.21702 1.01589 0.99653 0.77672 1.21890 1.00695 0.91611 1.01574 1.19039 0.97471 0.97286 0.87674 1.21222 1.49067 0.92874 0.92915 0.92580 1.25041 0.95381 0.97426 0.96672 1.69974 1.49653 1.32554 1.01006 0.86521 0.77817 0.85082 0.78475 1.19761 1.20981 1.20972 1.23020 0.90548 0.98646 1.05559 1.21224 0.94361 0.96850 0.97683 1.20979 0.93663 0.97959 1.01502 0.90799 0.91220 0.91156 0.85329 0.84886 0.76770 0.91692 0.91555 0.92622 0.92685 0.96268 0.96231 0.92933 0.86459 0.87181 0.85134 0.85198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.56 10.00 36.01 0.36 -0.20 16 2 C -0.07 -0.48 5.89 -104.53 -0.62 -1.10 16 3 C -0.12 -0.97 9.68 -39.65 -0.38 -1.36 16 4 C -0.07 -0.72 9.69 -39.17 -0.38 -1.10 16 5 C -0.05 -0.47 5.87 -105.03 -0.62 -1.09 16 6 C 0.12 1.39 7.15 -79.42 -0.57 0.82 16 7 N -0.27 -3.94 12.12 35.30 0.43 -3.51 16 8 O -0.16 -2.47 11.82 -30.21 -0.36 -2.82 16 9 C 0.02 0.27 4.22 -26.88 -0.11 0.16 16 10 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 11 C 0.49 7.41 7.16 -10.98 -0.08 7.33 16 12 O -0.52 -10.53 16.59 -13.28 -0.22 -10.76 16 13 N -0.72 -9.75 5.56 -60.29 -0.33 -10.08 16 14 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16 15 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 16 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.14 -1.16 5.83 -26.40 -0.15 -1.32 16 26 C -0.08 -0.64 9.61 -39.17 -0.38 -1.02 16 27 C -0.12 -0.87 9.68 -39.64 -0.38 -1.25 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 31 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 32 H 0.13 1.32 7.84 -52.49 -0.41 0.91 16 33 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 0.80 7.72 -51.93 -0.40 0.40 16 43 H 0.13 0.74 7.37 -52.49 -0.39 0.35 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -36.07 378.50 -9.66 -45.73 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -6.58 Total: -1.28 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -4.02 Total: -13.28 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: 0.83 Total: -39.51 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.58 Total: -13.58 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -36.07 -9.66 -45.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888815801.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal (2) G-P(sol) polarization free energy of solvation -36.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds