Wall clock time and date at job start Tue Mar 31 2020 12:02:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50712 * 1
3 3 C 1.38350 * 119.85080 * 2 1
4 4 C 1.37951 * 120.15119 * 180.23619 * 3 2 1
5 5 C 1.39611 * 119.84624 * 359.51166 * 4 3 2
6 6 C 1.47642 * 120.15288 * 180.27952 * 5 4 3
7 7 N 1.29089 * 125.86091 * 0.02562 * 6 5 4
8 8 O 1.41396 * 112.86880 * 179.64660 * 7 6 5
9 9 C 1.44200 * 107.59871 * 17.49646 * 8 7 6
10 10 H 1.08999 * 110.97355 * 216.48246 * 9 8 7
11 11 C 1.50700 * 110.97382 * 92.74550 * 9 8 7
12 12 O 1.21278 * 120.00285 * 356.45469 * 11 9 8
13 13 N 1.34781 * 119.99978 * 176.45301 * 11 9 8
14 14 C 1.46499 * 120.00126 * 179.97438 * 13 11 9
15 15 C 1.52999 * 109.47195 * 180.02562 * 14 13 11
16 16 C 1.52994 * 109.46967 * 180.02562 * 15 14 13
17 17 C 1.50703 * 109.47013 * 179.97438 * 16 15 14
18 18 H 1.07999 * 119.99997 * 0.02562 * 17 16 15
19 19 C 1.37881 * 119.99949 * 179.97438 * 17 16 15
20 20 N 1.31508 * 119.99885 * 0.02562 * 19 17 16
21 21 Si 1.86798 * 119.99700 * 180.02562 * 19 17 16
22 22 H 1.48494 * 109.47444 * 0.02562 * 21 19 17
23 23 H 1.48500 * 109.47117 * 119.99953 * 21 19 17
24 24 H 1.48502 * 109.47076 * 239.99836 * 21 19 17
25 25 C 1.51687 * 125.86859 * 179.71824 * 6 5 4
26 26 C 1.39620 * 119.70276 * 0.25173 * 5 4 3
27 27 C 1.37948 * 119.84478 * 0.02562 * 26 5 4
28 28 H 1.08998 * 109.46465 * 270.23459 * 1 2 3
29 29 H 1.08997 * 109.46995 * 30.22644 * 1 2 3
30 30 H 1.08996 * 109.47057 * 150.22997 * 1 2 3
31 31 H 1.08004 * 119.92892 * 0.02562 * 3 2 1
32 32 H 1.08002 * 120.08138 * 179.79375 * 4 3 2
33 33 H 0.97004 * 119.99915 * 0.02562 * 13 11 9
34 34 H 1.09001 * 109.46962 * 300.00067 * 14 13 11
35 35 H 1.09001 * 109.46747 * 60.00119 * 14 13 11
36 36 H 1.09006 * 109.46730 * 300.00170 * 15 14 13
37 37 H 1.09004 * 109.47251 * 59.99718 * 15 14 13
38 38 H 1.09006 * 109.47337 * 299.99557 * 16 15 14
39 39 H 1.08995 * 109.47713 * 59.99901 * 16 15 14
40 40 H 0.97004 * 119.99817 * 180.02562 * 20 19 17
41 41 H 1.09003 * 110.78870 * 282.90067 * 25 6 5
42 42 H 1.08996 * 110.79633 * 46.37627 * 25 6 5
43 43 H 1.07999 * 120.07559 * 180.02562 * 26 5 4
44 44 H 1.08006 * 119.92650 * 179.97438 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.1957 1.1999 0.0000
4 6 3.5752 1.2072 -0.0049
5 6 4.2764 -0.0001 0.0004
6 6 5.7528 -0.0002 0.0014
7 7 6.5091 1.0459 -0.0018
8 8 7.8868 0.7280 0.0083
9 6 8.0192 -0.6503 -0.3943
10 1 8.8234 -1.1413 0.1536
11 6 8.2383 -0.7593 -1.8813
12 8 8.2176 0.2374 -2.5719
13 7 8.4572 -1.9644 -2.4437
14 6 8.6696 -2.0705 -3.8893
15 6 8.8927 -3.5365 -4.2658
16 6 9.1152 -3.6471 -5.7755
17 6 9.3356 -5.0911 -6.1463
18 1 9.3182 -5.8537 -5.3817
19 6 9.5583 -5.4388 -7.4618
20 7 9.5789 -4.5102 -8.3929
21 14 9.8307 -7.2287 -7.9215
22 1 9.7591 -8.0699 -6.6999
23 1 8.7815 -7.6588 -8.8802
24 1 11.1677 -7.3804 -8.5499
25 6 6.6415 -1.2294 0.0130
26 6 3.5752 -1.2074 0.0054
27 6 2.1957 -1.2000 0.0044
28 1 -0.3632 0.0042 1.0277
29 1 -0.3633 0.8879 -0.5173
30 1 -0.3633 -0.8920 -0.5102
31 1 1.6521 2.1332 0.0004
32 1 4.1117 2.1446 -0.0083
33 1 8.4733 -2.7617 -1.8913
34 1 7.7932 -1.6902 -4.4141
35 1 9.5447 -1.4852 -4.1718
36 1 9.7690 -3.9171 -3.7409
37 1 8.0174 -4.1215 -3.9833
38 1 8.2392 -3.2664 -6.3007
39 1 9.9906 -3.0623 -6.0576
40 1 9.7353 -4.7549 -9.3184
41 1 6.6831 -1.6674 1.0104
42 1 6.2990 -1.9615 -0.7183
43 1 4.1115 -2.1448 0.0099
44 1 1.6519 -2.1332 0.0079
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000888815801.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:02:08
Heat of formation + Delta-G solvation = -11.345026 kcal
Electronic energy + Delta-G solvation = -24806.367078 eV
Core-core repulsion = 21110.840968 eV
Total energy + Delta-G solvation = -3695.526110 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 316.157 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-41.00699 -39.64379 -38.62511 -35.50566 -34.48287 -33.44324 -31.99118 -31.89765
-31.38929 -30.56602 -27.46141 -26.95462 -24.89964 -23.12722 -22.68353 -22.58321
-20.85916 -20.42983 -19.94613 -17.79795 -17.42739 -16.44815 -16.11107 -15.87794
-15.74214 -15.46119 -15.21063 -14.90083 -14.51539 -14.26100 -14.19055 -13.97748
-13.86117 -13.44509 -13.37675 -12.80304 -12.68444 -12.38855 -12.32960 -12.25178
-11.89036 -11.76416 -11.68945 -11.51036 -10.98687 -10.95622 -10.81833 -10.66087
-10.58245 -9.93309 -9.76619 -9.37878 -9.36173 -9.14482 -8.91491 -8.70284
-8.41340 -6.05460 -4.08883 0.34690 1.01328 1.89157 2.40349 2.82953
3.12085 3.27176 3.34848 3.37947 3.41263 3.60882 4.04425 4.10693
4.40580 4.43833 4.46021 4.53178 4.59512 4.75334 4.90650 4.97300
5.03345 5.09228 5.17358 5.23519 5.30424 5.34519 5.43204 5.62755
5.63563 5.67785 5.69843 6.00778 6.03138 6.08315 6.16979 6.35108
6.51962 6.52219 6.73247 6.93268 7.04930 7.53028 7.59298 7.70957
7.92860 8.20904 8.33720 8.97958 9.55574 11.05846
Molecular weight = 316.16amu
Principal moments of inertia in cm(-1)
A = 0.013431 B = 0.002368 C = 0.002115
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2084.267641 B =11823.694643 C =13233.357750
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.119 4.119
2 C -0.067 4.067
3 C -0.124 4.124
4 C -0.074 4.074
5 C -0.047 4.047
6 C 0.122 3.878
7 N -0.272 5.272
8 O -0.164 6.164
9 C 0.024 3.976
10 H 0.141 0.859
11 C 0.490 3.510
12 O -0.517 6.517
13 N -0.721 5.721
14 C 0.116 3.884
15 C -0.120 4.120
16 C 0.023 3.977
17 C -0.522 4.522
18 H 0.056 0.944
19 C 0.056 3.944
20 N -0.893 5.893
21 Si 0.893 3.107
22 H -0.273 1.273
23 H -0.284 1.284
24 H -0.284 1.284
25 C -0.138 4.138
26 C -0.081 4.081
27 C -0.123 4.123
28 H 0.073 0.927
29 H 0.069 0.931
30 H 0.069 0.931
31 H 0.129 0.871
32 H 0.133 0.867
33 H 0.399 0.601
34 H 0.065 0.935
35 H 0.066 0.934
36 H 0.055 0.945
37 H 0.054 0.946
38 H 0.019 0.981
39 H 0.019 0.981
40 H 0.261 0.739
41 H 0.117 0.883
42 H 0.110 0.890
43 H 0.131 0.869
44 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.904 6.208 22.876 28.544
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.175 4.175
2 C -0.068 4.068
3 C -0.142 4.142
4 C -0.094 4.094
5 C -0.048 4.048
6 C -0.068 4.068
7 N -0.012 5.012
8 O -0.182 6.182
9 C -0.038 4.038
10 H 0.159 0.841
11 C 0.274 3.726
12 O -0.392 6.392
13 N -0.374 5.374
14 C -0.006 4.006
15 C -0.158 4.158
16 C -0.015 4.015
17 C -0.561 4.561
18 H 0.074 0.926
19 C -0.145 4.145
20 N -0.532 5.532
21 Si 0.721 3.279
22 H -0.198 1.198
23 H -0.210 1.210
24 H -0.210 1.210
25 C -0.178 4.178
26 C -0.101 4.101
27 C -0.141 4.141
28 H 0.092 0.908
29 H 0.088 0.912
30 H 0.088 0.912
31 H 0.147 0.853
32 H 0.151 0.849
33 H 0.232 0.768
34 H 0.083 0.917
35 H 0.084 0.916
36 H 0.074 0.926
37 H 0.073 0.927
38 H 0.037 0.963
39 H 0.038 0.962
40 H 0.071 0.929
41 H 0.135 0.865
42 H 0.128 0.872
43 H 0.149 0.851
44 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -15.589 8.223 22.217 28.359
hybrid contribution 0.448 -2.330 -0.256 2.387
sum -15.141 5.893 21.961 27.317
Atomic orbital electron populations
1.20866 0.90819 1.03251 1.02605 1.20154 0.96459 0.93145 0.97070
1.21015 0.93712 0.97964 1.01495 1.21355 0.94218 0.97583 0.96209
1.17754 0.86981 0.94494 1.05572 1.24240 0.94337 0.92490 0.95732
1.78442 0.88942 1.21847 1.11976 1.91337 1.15825 1.25494 1.85578
1.23695 0.99804 0.85926 0.94405 0.84130 1.20703 0.78035 0.84245
0.89640 1.90767 1.49055 1.36082 1.63258 1.46165 1.72496 1.08178
1.10513 1.21702 1.01589 0.99653 0.77672 1.21890 1.00695 0.91611
1.01574 1.19039 0.97471 0.97286 0.87674 1.21222 1.49067 0.92874
0.92915 0.92580 1.25041 0.95381 0.97426 0.96672 1.69974 1.49653
1.32554 1.01006 0.86521 0.77817 0.85082 0.78475 1.19761 1.20981
1.20972 1.23020 0.90548 0.98646 1.05559 1.21224 0.94361 0.96850
0.97683 1.20979 0.93663 0.97959 1.01502 0.90799 0.91220 0.91156
0.85329 0.84886 0.76770 0.91692 0.91555 0.92622 0.92685 0.96268
0.96231 0.92933 0.86459 0.87181 0.85134 0.85198
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.56 10.00 36.01 0.36 -0.20 16
2 C -0.07 -0.48 5.89 -104.53 -0.62 -1.10 16
3 C -0.12 -0.97 9.68 -39.65 -0.38 -1.36 16
4 C -0.07 -0.72 9.69 -39.17 -0.38 -1.10 16
5 C -0.05 -0.47 5.87 -105.03 -0.62 -1.09 16
6 C 0.12 1.39 7.15 -79.42 -0.57 0.82 16
7 N -0.27 -3.94 12.12 35.30 0.43 -3.51 16
8 O -0.16 -2.47 11.82 -30.21 -0.36 -2.82 16
9 C 0.02 0.27 4.22 -26.88 -0.11 0.16 16
10 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16
11 C 0.49 7.41 7.16 -10.98 -0.08 7.33 16
12 O -0.52 -10.53 16.59 -13.28 -0.22 -10.76 16
13 N -0.72 -9.75 5.56 -60.29 -0.33 -10.08 16
14 C 0.12 2.01 5.67 -4.04 -0.02 1.98 16
15 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16
16 C 0.02 0.57 4.97 -27.88 -0.14 0.44 16
17 C -0.52 -14.37 9.11 -34.44 -0.31 -14.69 16
18 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16
19 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16
20 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16
21 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16
22 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16
23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16
25 C -0.14 -1.16 5.83 -26.40 -0.15 -1.32 16
26 C -0.08 -0.64 9.61 -39.17 -0.38 -1.02 16
27 C -0.12 -0.87 9.68 -39.64 -0.38 -1.25 16
28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16
29 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16
30 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16
31 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16
32 H 0.13 1.32 7.84 -52.49 -0.41 0.91 16
33 H 0.40 3.93 8.47 -40.82 -0.35 3.58 16
34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16
36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
37 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16
38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16
40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16
41 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16
42 H 0.11 0.80 7.72 -51.93 -0.40 0.40 16
43 H 0.13 0.74 7.37 -52.49 -0.39 0.35 16
44 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16
LS Contribution 378.50 15.07 5.70 5.70
Total: -1.00 -36.07 378.50 -9.66 -45.73
By element:
Atomic # 1 Polarization: 5.29 SS G_CDS: -6.58 Total: -1.28 kcal
Atomic # 6 Polarization: -9.26 SS G_CDS: -4.02 Total: -13.28 kcal
Atomic # 7 Polarization: -40.34 SS G_CDS: 0.83 Total: -39.51 kcal
Atomic # 8 Polarization: -13.00 SS G_CDS: -0.58 Total: -13.58 kcal
Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal
Total LS contribution 5.70 Total: 5.70 kcal
Total: -36.07 -9.66 -45.73 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000888815801.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 34.389 kcal
(2) G-P(sol) polarization free energy of solvation -36.070 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.681 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.664 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.734 kcal
(6) G-S(sol) free energy of system = (1) + (5) -11.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds